Rv0006 - c.1170T>C
Drug resistance types
60 Sensitive
8 RR-TB
198 HR-TB
25 MDR-TB
8 Pre-XDR-TB
0 XDR-TB
139 Other
lineage Counts
| lineage | Count |
|---|---|
| 190 | |
| lineage4 | 66 |
| lineage4.1.2.1 | 17 |
| lineage2.2 | 10 |
| lineage4.9 | 41 |
| La1 | 2 |
| La1.8.1 | 5 |
| lineage4.6.2.2 | 5 |
| lineage4.1.3 | 2 |
| lineage4;lineage3.1 | 1 |
| La1.2 | 2 |
| lineage2 | 3 |
| lineage2.2.1 | 22 |
| lineage4.3.3 | 3 |
| lineage3 | 3 |
| lineage4.6.1.1 | 1 |
| lineage4.3.4 | 2 |
| lineage4.3.2 | 2 |
| lineage1.1.3.1 | 1 |
| lineage1.1.2 | 2 |
| lineage2.1 | 6 |
| lineage4.8;lineage4.1 | 2 |
| lineage4.8 | 5 |
| lineage6.3.1 | 1 |
| lineage6 | 1 |
| lineage6.1.3 | 1 |
| La3 | 1 |
| lineage2.2.1.2 | 2 |
| lineage4.4.1.1 | 4 |
| lineage2.2.1.1 | 2 |
| lineage3.1 | 3 |
| lineage4.5 | 2 |
| lineage1.1.1 | 1 |
| lineage4.2.1 | 1 |
| La1.7.1 | 1 |
| lineage4.9;La3 | 1 |
| lineage9;lineage3.1 | 1 |
| lineage4.1 | 3 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage4.2;La1.7 | 1 |
| lineage4.1.1 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage3;lineage2.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.3 | 1 |
| lineage4.1.1.3 | 1 |
| lineage3.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage1.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.7 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 438 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR067681 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034634 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1035122 | Sensitive | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1035157 | Other | lineage4.9 | None | ERR1063857 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063859 | HR-TB | None | ERR1063858 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR133986 | HR-TB | None | ERR3283017 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283021 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283028 | Other | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR5336148 | Other | None | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR3439432 | Other | None | ERR3445503 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797015 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797036 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797048 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797044 | Other | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797069 | Other | None | ERR3797063 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797083 | HR-TB | None | ERR3797081 | Sensitive | lineage4 | None | ERR387051 | HR-TB | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4024991 | Other | None | ERR403298 | HR-TB | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR4188247 | HR-TB | None | ERR4798823 | HR-TB | lineage4 | None | ERR4407463 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4798406 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769521 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796577 | MDR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4798262 | HR-TB | La1 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811493 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4800341 | Other | lineage3 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358979 | Other | None | ERR6358837 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6866410 | Sensitive | None | ERR6866022 | Other | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR702406 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736848 | HR-TB | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR736875 | HR-TB | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR736867 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR736874 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR22250055 | HR-TB | lineage2.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR8976043 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786843 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1172817 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1172951 | Other | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172857 | MDR-TB | None | SRR1173400 | Other | None | SRR1173118 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173629 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173778 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175074 | MDR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1183049 | Other | lineage2.2 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196494 | MDR-TB | None | SRR1196768 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR13837521 | Sensitive | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13838004 | Sensitive | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861329 | Other | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861534 | Other | lineage4.9 | None | SRR13861571 | RR-TB | lineage4.9 | None | SRR13861611 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR14782405 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1640750 | HR-TB | None | SRR1710057 | Other | lineage2.1 | None | SRR15368973 | Other | None | SRR1791696 | Other | La1.8.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR20970016 | Other | lineage2.2 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR11662293 | MDR-TB | lineage2.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR176778 | HR-TB | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR23961549 | Other | La1.2 | None | SRR6325445 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR176779 | HR-TB | None | SRR3675502 | Other | None | ERR1035239 | HR-TB | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR161033 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675236 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3416776 | Other | lineage2.1 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | SRR3675221 | HR-TB | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR176568 | Other | lineage4.3 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675312 | HR-TB | lineage4 | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | SRR3675545 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675510 | Other | None | SRR3675456 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR4817037 | Other | lineage4.9 | None | ERR212034 | HR-TB | None | SRR3675550 | Other | None | ERR212001 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212033 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675572 | Other | None | ERR212121 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816466 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3742665 | HR-TB | None | ERR4816656 | HR-TB | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR2229674 | Other | lineage4.8 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR1035162 | Other | None | ERR234659 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4818393 | RR-TB | lineage3 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR4818929 | HR-TB | None | SRR5007188 | Other | lineage4 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341408 | Sensitive | lineage3 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341418 | Other | None | SRR5341432 | HR-TB | lineage4 | None | ERR2514327 | HR-TB | lineage4.8 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | ERR2514692 | Other | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341315 | Sensitive | None | SRR5341313 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341333 | HR-TB | None | SRR5341330 | HR-TB | None | SRR5341467 | Other | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | ERR2693254 | Other | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341469 | Other | lineage4 | None | ERR2693239 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693230 | Other | None | SRR5535933 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6044876 | Sensitive | lineage4 | None | ERR2660539 | Other | lineage4.9 | None | SRR6044780 | Other | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044790 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045053 | Other | None | SRR6045010 | Other | lineage4 | None | SRR6046015 | Other | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6046210 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045399 | Other | None | SRR6045327 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046397 | Other | None | SRR6046514 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325447 | HR-TB | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6046824 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | SRR6325442 | HR-TB | None | ERR485006 | HR-TB | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR6831950 | Other | lineage4.3.3 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6789626 | Other | None | ERR323036 | HR-TB | None | ERR5311099 | HR-TB | None | ERR502532 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR502889 | Other | None | ERR323038 | HR-TB | None | ERR5311081 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR5311090 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323055 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323045 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | DRR188519 | Other | lineage4.4.2 | None | ERR323107 | Other | lineage4 | None |
|---|
