TB-Profiler result

Run: SRR13861322
Summary

Run ID: SRR13861322

Sample name:

Date: 03-04-2023 09:29:03

Number of reads: 864612

Percentage reads mapped: 21.64

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.8 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6856 c.-446T>C upstream_gene_variant 0.14
gyrA 6862 c.-440C>G upstream_gene_variant 0.14
gyrA 6881 c.-421T>C upstream_gene_variant 0.14
gyrA 7626 c.325C>T synonymous_variant 0.16
gyrA 7631 c.330G>C synonymous_variant 0.15
gyrA 7637 c.336C>G synonymous_variant 0.17
gyrA 7649 c.348C>T synonymous_variant 0.2
gyrA 7652 c.351C>T synonymous_variant 0.21
gyrA 7658 c.357A>G synonymous_variant 0.18
gyrA 7664 c.363T>C synonymous_variant 0.18
gyrA 7670 c.369A>G synonymous_variant 0.18
gyrA 7676 c.375G>C synonymous_variant 0.21
gyrA 7683 c.382A>C synonymous_variant 0.21
gyrA 7694 c.393A>G synonymous_variant 0.2
gyrA 7697 c.396C>G synonymous_variant 0.2
gyrA 7710 c.409T>C synonymous_variant 0.17
gyrA 7715 c.414G>C synonymous_variant 0.19
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 0.15
gyrA 7760 c.459C>T synonymous_variant 0.17
gyrA 7763 c.462T>C synonymous_variant 0.17
gyrA 8111 c.810G>C synonymous_variant 0.21
gyrA 8204 c.903C>T synonymous_variant 0.14
gyrA 8219 c.918T>C synonymous_variant 0.16
gyrA 8225 c.924T>C synonymous_variant 0.16
gyrA 8234 c.933T>G synonymous_variant 0.17
gyrA 8235 c.934_936delTTAinsCTG synonymous_variant 0.17
gyrA 8253 p.Ile318Leu missense_variant 0.17
gyrA 8339 c.1038A>G synonymous_variant 0.17
gyrA 8342 c.1041G>C synonymous_variant 0.17
gyrA 8366 c.1065G>C synonymous_variant 0.15
gyrA 8375 c.1074G>C synonymous_variant 0.15
gyrA 8391 p.Tyr364His missense_variant 0.19
gyrA 8399 c.1098T>C synonymous_variant 0.19
gyrA 8420 c.1119T>C synonymous_variant 0.21
gyrA 8423 c.1122G>C synonymous_variant 0.22
gyrA 8442 c.1141C>T synonymous_variant 0.2
gyrA 8453 c.1152A>C synonymous_variant 0.24
gyrA 8462 c.1161A>G synonymous_variant 0.26
gyrA 8471 c.1170T>C synonymous_variant 0.26
gyrA 8480 c.1179C>T synonymous_variant 0.26
gyrA 8486 c.1185T>C synonymous_variant 0.24
gyrA 8489 c.1188A>G synonymous_variant 0.25
gyrA 8498 c.1197C>T synonymous_variant 0.2
gyrA 8504 c.1203G>C synonymous_variant 0.21
gyrA 8516 c.1215T>C synonymous_variant 0.24
gyrA 8519 c.1218A>C synonymous_variant 0.24
gyrA 8537 c.1236G>A synonymous_variant 0.17
gyrA 8546 c.1245T>C synonymous_variant 0.17
gyrA 8597 c.1296C>G synonymous_variant 0.18
gyrA 8603 c.1302A>G synonymous_variant 0.17
gyrA 8619 c.1318T>C synonymous_variant 0.17
gyrA 8624 c.1323G>C synonymous_variant 0.16
gyrA 8627 c.1326C>G synonymous_variant 0.16
gyrA 8636 c.1335A>G synonymous_variant 0.17
gyrA 8642 c.1341A>G synonymous_variant 0.17
gyrA 8645 c.1344C>G synonymous_variant 0.17
gyrA 8693 c.1392T>C synonymous_variant 0.15
gyrA 8699 c.1398A>G synonymous_variant 0.16
fgd1 490804 p.Tyr8Asn missense_variant 1.0
fgd1 490893 c.111C>T synonymous_variant 1.0
fgd1 491121 c.339A>G synonymous_variant 0.15
fgd1 491137 p.Glu119Gln missense_variant 0.15
fgd1 491145 c.363C>G synonymous_variant 0.15
fgd1 491181 c.399T>C synonymous_variant 0.15
mshA 575498 p.Ala51Pro missense_variant 1.0
rpoB 760730 c.924T>C synonymous_variant 0.16
rpoB 760751 c.945G>C synonymous_variant 0.17
rpoB 760757 c.951T>C synonymous_variant 0.16
rpoB 760759 p.Val318Ala missense_variant 0.16
rpoB 760763 c.957C>T synonymous_variant 0.15
rpoB 760769 c.963C>G synonymous_variant 0.14
rpoB 760776 p.Ser324Thr missense_variant 0.14
rpoB 760805 c.999G>C synonymous_variant 0.15
rpoB 760859 c.1053T>C synonymous_variant 0.13
rpoB 760970 c.1164G>C synonymous_variant 0.18
rpoB 760982 c.1176G>C synonymous_variant 0.15
rpoB 760985 c.1179G>C synonymous_variant 0.14
rpoB 760991 c.1185G>C synonymous_variant 0.16
rpoB 761036 c.1230G>C synonymous_variant 0.16
rpoB 761037 c.1231T>C synonymous_variant 0.16
rpoB 761165 c.1359G>C synonymous_variant 0.15
rpoB 761168 c.1362C>G synonymous_variant 0.14
rpoB 761171 c.1365C>T synonymous_variant 0.14
rpoB 761180 c.1374A>C synonymous_variant 0.14
rpoB 761183 c.1377T>G synonymous_variant 0.14
rpoB 761222 c.1416G>C synonymous_variant 0.15
rpoB 761249 c.1443A>G synonymous_variant 0.19
rpoB 761255 c.1449T>G synonymous_variant 0.18
rpoB 761261 c.1455G>T synonymous_variant 0.18
rpoB 761864 c.2058G>C synonymous_variant 0.13
rpoB 761873 c.2067A>G synonymous_variant 0.18
rpoB 761885 c.2079T>C synonymous_variant 0.18
rpoB 761891 c.2085G>C synonymous_variant 0.17
rpoB 761906 c.2100C>G synonymous_variant 0.16
rpoB 761909 c.2103T>C synonymous_variant 0.16
rpoB 761912 c.2106T>C synonymous_variant 0.16
rpoB 761915 p.Asp703Glu missense_variant 0.15
rpoB 761916 p.Asp704Asn missense_variant 0.15
rpoB 761948 c.2142G>C synonymous_variant 0.18
rpoB 761954 c.2148C>G synonymous_variant 0.19
rpoB 761999 c.2193G>C synonymous_variant 0.2
rpoB 762008 c.2202C>G synonymous_variant 0.18
rpoB 762062 c.2256T>C synonymous_variant 0.14
rpoB 762131 c.2325C>G synonymous_variant 0.15
rpoC 763040 c.-330C>G upstream_gene_variant 0.16
rpoC 763070 c.-300T>C upstream_gene_variant 0.17
rpoC 763076 c.-294C>G upstream_gene_variant 0.15
rpoC 763085 c.-285C>G upstream_gene_variant 0.15
rpoC 763115 c.-255T>C upstream_gene_variant 0.15
rpoC 763136 c.-234C>T upstream_gene_variant 0.17
rpoC 763148 c.-222G>C upstream_gene_variant 0.17
rpoC 763663 c.294C>A synonymous_variant 0.97
rpoC 763801 c.432C>G synonymous_variant 0.15
rpoC 763807 c.438T>C synonymous_variant 0.18
rpoC 763819 c.450G>C synonymous_variant 0.17
rpoC 763831 c.462A>G synonymous_variant 0.18
rpoC 763835 p.Ala156Met missense_variant 0.16
rpoC 763858 c.489A>G synonymous_variant 0.17
rpoC 763872 p.Gly168Ala missense_variant 0.16
rpoC 763876 p.Glu169Asp missense_variant 0.16
rpoC 763879 c.510A>G synonymous_variant 0.16
rpoC 763919 c.550C>T synonymous_variant 0.17
rpoC 763933 c.564C>T synonymous_variant 0.22
rpoC 763945 c.576T>C synonymous_variant 0.17
rpoC 763955 p.Lys196Gln missense_variant 0.8
rpoC 763960 c.591T>C synonymous_variant 0.19
rpoC 763967 p.Gly200Ser missense_variant 0.19
rpoC 763978 c.609C>G synonymous_variant 0.19
rpoC 763996 c.627T>C synonymous_variant 0.19
rpoC 764005 c.636G>C synonymous_variant 0.19
rpoC 764011 c.642T>C synonymous_variant 0.16
rpoC 764024 c.655T>C synonymous_variant 0.18
rpoC 764040 p.Ser224Asn missense_variant 0.15
rpoC 764044 c.675T>C synonymous_variant 0.15
rpoC 764059 c.690G>C synonymous_variant 0.14
rpoC 764098 c.729A>G synonymous_variant 0.13
rpoC 764644 c.1275G>C synonymous_variant 0.14
rpoC 764714 c.1345C>T synonymous_variant 0.26
rpoC 764720 c.1351C>T synonymous_variant 0.25
rpoC 764752 c.1383G>C synonymous_variant 0.26
rpoC 764764 c.1395T>C synonymous_variant 0.26
rpoC 764791 c.1422C>G synonymous_variant 0.3
rpoC 764809 c.1440C>T synonymous_variant 0.26
rpoC 764812 c.1443C>G synonymous_variant 0.26
rpoC 764815 c.1446A>G synonymous_variant 0.26
rpoC 764824 c.1455T>C synonymous_variant 0.33
rpoC 764830 c.1461C>G synonymous_variant 0.28
rpoC 764858 c.1489T>C synonymous_variant 0.21
rpoC 764872 c.1503A>G synonymous_variant 0.21
rpoC 764893 c.1524T>C synonymous_variant 0.17
rpoC 765383 p.Met672Leu missense_variant 0.17
rpoC 765404 p.Leu679Val missense_variant 0.15
rpoC 765409 c.2040T>C synonymous_variant 0.19
rpoC 765412 c.2043T>C synonymous_variant 0.19
rpoC 765421 c.2052C>G synonymous_variant 0.21
rpoC 765451 c.2082C>G synonymous_variant 0.18
rpoC 765452 p.Ala695Ser missense_variant 0.18
rpoC 765478 c.2109T>C synonymous_variant 0.24
rpoC 765499 c.2130C>G synonymous_variant 0.26
rpoC 765508 c.2139C>G synonymous_variant 0.22
rpoC 765541 c.2172C>G synonymous_variant 0.22
rpoC 765553 c.2184C>T synonymous_variant 0.21
rpoC 765556 c.2187G>C synonymous_variant 0.23
rpoC 765559 c.2190G>C synonymous_variant 0.22
rpoC 765578 c.2209C>T synonymous_variant 0.18
rpoC 765583 c.2214G>T synonymous_variant 0.18
rpoC 765613 p.His748Gln missense_variant 0.18
rpoC 765625 c.2256C>G synonymous_variant 0.18
rpoC 765628 c.2259G>C synonymous_variant 0.17
rpoC 765631 p.Asp754Glu missense_variant 0.17
rpoC 765658 c.2289C>T synonymous_variant 0.17
rpoC 765682 p.Asn771Lys missense_variant 0.87
rpoC 765700 c.2331T>C synonymous_variant 0.15
rpoC 765734 c.2365T>C synonymous_variant 0.15
rpoC 766342 c.2973C>A synonymous_variant 0.88
rpoC 766408 c.3039C>T synonymous_variant 0.16
rpoC 766522 c.3153C>G synonymous_variant 0.16
rpoC 766528 c.3159T>C synonymous_variant 0.22
rpoC 766531 c.3162G>T synonymous_variant 0.19
rpoC 766543 c.3174C>T synonymous_variant 0.22
rpoC 766549 c.3180G>C synonymous_variant 0.22
rpoC 766573 c.3204T>C synonymous_variant 0.16
rpoC 766583 p.Gly1072Ser missense_variant 0.17
rpoC 766588 c.3219G>A synonymous_variant 0.17
rpoC 766591 c.3222A>G synonymous_variant 0.17
rpoC 766594 c.3225G>C synonymous_variant 0.17
rpoC 766607 p.Ile1080Leu missense_variant 0.2
rpoC 766630 c.3261G>C synonymous_variant 0.21
rpoC 766645 c.3276A>G synonymous_variant 0.22
rpoC 766651 c.3282T>C synonymous_variant 0.2
rpoC 766657 c.3288A>G synonymous_variant 0.22
rpoC 766672 c.3303T>C synonymous_variant 0.2
rpoC 766726 c.3357T>C synonymous_variant 0.2
rpoC 766738 c.3369G>T synonymous_variant 0.18
rpoC 766750 c.3381C>G synonymous_variant 0.18
rpoC 766765 c.3396A>C synonymous_variant 0.2
rpoC 766774 c.3405T>C synonymous_variant 0.15
rpoC 766801 c.3432C>A synonymous_variant 0.17
rpoC 766804 c.3435A>G synonymous_variant 0.17
rpoC 766843 c.3474T>C synonymous_variant 0.14
rpoC 766864 c.3495G>C synonymous_variant 0.14
rpoC 766894 c.3525T>C synonymous_variant 0.18
rpoC 766895 c.3526T>C synonymous_variant 0.18
rpoC 766900 c.3531T>C synonymous_variant 0.17
rpoC 766933 c.3564A>G synonymous_variant 0.19
rpoC 766945 c.3576A>G synonymous_variant 0.17
rpoC 766963 c.3594T>C synonymous_variant 0.17
rpoC 766978 c.3609C>G synonymous_variant 0.21
rpoC 766996 c.3627C>T synonymous_variant 0.19
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.19
rpoC 767014 c.3645G>C synonymous_variant 0.19
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.19
rpoC 767059 c.3690T>G synonymous_variant 0.19
rpoC 767062 c.3693C>A synonymous_variant 0.18
rpoC 767074 c.3705T>C synonymous_variant 0.21
rpoC 767098 c.3729T>C synonymous_variant 0.19
rpoC 767119 c.3750A>G synonymous_variant 0.2
rpoC 767134 c.3765C>G synonymous_variant 0.17
rpoC 767158 c.3789T>C synonymous_variant 0.15
rpoC 767167 c.3798C>G synonymous_variant 0.17
rpoC 767180 p.Ala1271Gln missense_variant 0.14
rpoC 767191 c.3822C>G synonymous_variant 0.15
rpoC 767206 c.3837C>G synonymous_variant 0.15
rpoC 767212 c.3843G>C synonymous_variant 0.15
rpoC 767221 c.3852C>G synonymous_variant 0.12
rpsL 781579 p.Leu7Arg missense_variant 0.94
rplC 800618 c.-191T>C upstream_gene_variant 0.14
rplC 801171 c.363A>G synonymous_variant 0.17
rplC 801174 c.366T>C synonymous_variant 0.17
rplC 801228 c.420T>C synonymous_variant 0.14
rplC 801267 c.459A>C synonymous_variant 0.14
rplC 801282 c.474G>C synonymous_variant 0.16
rplC 801301 c.493C>A synonymous_variant 0.15
rplC 801312 c.504G>C synonymous_variant 0.16
rplC 801324 c.516T>C synonymous_variant 0.17
rplC 801336 c.528C>G synonymous_variant 0.18
rplC 801339 c.531T>C synonymous_variant 0.17
rplC 801341 p.Leu178Gln missense_variant 0.18
rplC 801348 c.540T>G synonymous_variant 0.18
rplC 801357 c.549T>C synonymous_variant 0.19
rplC 801367 p.Ala187Thr missense_variant 0.15
rplC 801396 c.588T>C synonymous_variant 0.14
rplC 801402 c.594T>C synonymous_variant 0.15
rplC 801405 c.597T>C synonymous_variant 0.14
rplC 801423 c.615G>C synonymous_variant 0.14
rplC 801438 c.630T>C synonymous_variant 0.17
fbiC 1303995 c.1065C>T synonymous_variant 0.13
fbiC 1304580 c.1650T>C synonymous_variant 0.18
fbiC 1304628 c.1698G>C synonymous_variant 0.18
fbiC 1304634 c.1704C>G synonymous_variant 0.17
fbiC 1304640 c.1710A>C synonymous_variant 0.17
fbiC 1304646 c.1716T>C synonymous_variant 0.18
fbiC 1304658 c.1728C>G synonymous_variant 0.18
fbiC 1304670 c.1740G>T synonymous_variant 0.17
fbiC 1304671 p.Val581Thr missense_variant 0.18
fbiC 1304675 p.Gly582Glu missense_variant 0.18
fbiC 1304691 c.1761G>C synonymous_variant 0.21
fbiC 1304694 c.1764A>C synonymous_variant 0.21
fbiC 1304703 c.1773C>G synonymous_variant 0.21
fbiC 1304715 c.1785G>C synonymous_variant 0.21
fbiC 1304724 c.1794A>G synonymous_variant 0.18
fbiC 1304727 c.1797A>G synonymous_variant 0.16
fbiC 1304742 c.1812T>C synonymous_variant 0.15
fbiC 1304748 c.1818T>C synonymous_variant 0.16
fbiC 1304754 c.1824G>A synonymous_variant 0.16
fbiC 1304757 c.1827A>G synonymous_variant 0.16
fbiC 1304784 c.1854T>C synonymous_variant 0.16
fbiC 1304787 c.1857T>C synonymous_variant 0.16
fbiC 1304790 c.1860C>G synonymous_variant 0.16
fbiC 1304808 c.1878C>G synonymous_variant 0.15
fbiC 1304811 c.1881C>G synonymous_variant 0.15
fbiC 1304817 c.1887T>C synonymous_variant 0.17
embR 1416509 p.Arg280Pro missense_variant 1.0
rrs 1472101 n.256G>A non_coding_transcript_exon_variant 0.22
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.22
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.51
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.67
rrs 1472122 n.277G>A non_coding_transcript_exon_variant 0.5
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.71
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.71
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.72
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.71
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.72
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 0.71
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.72
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 0.71
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.73
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.72
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 0.71
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.71
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.71
rrs 1472230 n.385C>T non_coding_transcript_exon_variant 0.26
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.71
rrs 1472236 n.391C>G non_coding_transcript_exon_variant 0.71
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.72
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.64
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 0.57
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.45
rrs 1472262 n.417C>T non_coding_transcript_exon_variant 0.37
rrs 1472269 n.424G>A non_coding_transcript_exon_variant 0.15
rrs 1472271 n.426T>C non_coding_transcript_exon_variant 0.15
rrs 1472505 n.660G>A non_coding_transcript_exon_variant 0.26
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.47
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.77
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.77
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.76
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.74
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.75
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.75
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.78
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 0.76
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.76
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.76
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.75
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.74
rrs 1472596 n.751G>T non_coding_transcript_exon_variant 0.76
rrs 1472598 n.753A>T non_coding_transcript_exon_variant 0.77
rrs 1472614 n.769G>T non_coding_transcript_exon_variant 0.83
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.85
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.85
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.81
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.82
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 0.82
rrs 1472669 n.824_825insTAGG non_coding_transcript_exon_variant 0.82
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.81
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.8
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.8
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.79
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.8
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.81
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.6
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.16
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.16
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.14
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.14
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.14
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.15
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.4
rrs 1473248 n.1403G>A non_coding_transcript_exon_variant 0.4
rrs 1473249 n.1404T>C non_coding_transcript_exon_variant 0.4
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.4
rrs 1473255 n.1410A>G non_coding_transcript_exon_variant 0.41
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.4
rrs 1473260 n.1415G>T non_coding_transcript_exon_variant 0.4
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.37
rrs 1473281 n.1436C>A non_coding_transcript_exon_variant 0.36
rrs 1473282 n.1437C>G non_coding_transcript_exon_variant 0.37
rrs 1473288 n.1443C>A non_coding_transcript_exon_variant 0.38
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.42
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.4
rrs 1473296 n.1451G>C non_coding_transcript_exon_variant 0.39
rrs 1473297 n.1452G>T non_coding_transcript_exon_variant 0.39
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.38
rrs 1473327 n.1482A>G non_coding_transcript_exon_variant 0.33
rrs 1473328 n.1483C>T non_coding_transcript_exon_variant 0.33
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.33
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.13
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.14
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 0.16
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.15
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.21
rrl 1473899 n.242A>C non_coding_transcript_exon_variant 0.21
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.2
rrl 1473944 n.287G>A non_coding_transcript_exon_variant 0.19
rrl 1473945 n.288T>C non_coding_transcript_exon_variant 0.19
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.15
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.16
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.16
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.16
rrl 1474051 n.394T>C non_coding_transcript_exon_variant 0.15
rrl 1474054 n.397T>C non_coding_transcript_exon_variant 0.15
rrl 1474056 n.399T>C non_coding_transcript_exon_variant 0.15
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.21
rrl 1474104 n.447G>A non_coding_transcript_exon_variant 0.21
rrl 1474111 n.454T>C non_coding_transcript_exon_variant 0.18
rrl 1474112 n.455T>A non_coding_transcript_exon_variant 0.18
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.15
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.13
rrl 1474164 n.507C>A non_coding_transcript_exon_variant 0.9
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.23
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.73
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.78
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.84
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.84
rrl 1476263 n.2606C>T non_coding_transcript_exon_variant 0.18
rrl 1476268 n.2611A>T non_coding_transcript_exon_variant 0.85
rrl 1476275 n.2618T>A non_coding_transcript_exon_variant 0.86
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.85
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.85
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.83
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.85
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.85
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.84
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.83
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 0.83
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.83
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.83
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.83
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.84
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.92
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.95
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.95
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.95
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.95
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.95
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.74
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.94
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.93
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.93
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.93
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.93
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.91
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.83
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.74
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.7
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.71
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.72
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.72
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.72
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.72
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.71
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.71
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.71
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.71
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.67
rrl 1476572 n.2915G>A non_coding_transcript_exon_variant 0.68
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.69
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.69
rrl 1476595 n.2938C>G non_coding_transcript_exon_variant 0.26
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.18
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.14
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.14
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.14
inhA 1674315 c.114C>G synonymous_variant 1.0
inhA 1674549 c.348G>C synonymous_variant 0.14
inhA 1674582 c.381T>C synonymous_variant 0.15
inhA 1674585 c.384T>C synonymous_variant 0.15
inhA 1674589 p.Met130Leu missense_variant 0.14
inhA 1674624 c.423A>C synonymous_variant 0.13
inhA 1674627 c.426T>G synonymous_variant 0.14
inhA 1674636 c.435C>G synonymous_variant 0.19
inhA 1674654 c.453G>C synonymous_variant 0.17
inhA 1674693 c.492C>G synonymous_variant 0.14
inhA 1674718 c.517A>C synonymous_variant 0.14
inhA 1674855 c.654C>T synonymous_variant 0.12
rpsA 1833667 c.126C>G synonymous_variant 0.15
rpsA 1833724 c.183C>G synonymous_variant 0.22
rpsA 1833727 c.186G>C synonymous_variant 0.22
rpsA 1833742 c.201A>G synonymous_variant 0.21
rpsA 1833745 c.204G>C synonymous_variant 0.21
rpsA 1833787 c.246C>G synonymous_variant 0.25
rpsA 1833790 c.249T>A synonymous_variant 0.23
rpsA 1833799 c.258C>G synonymous_variant 0.24
rpsA 1833811 c.270G>C synonymous_variant 0.25
rpsA 1833838 c.297G>C synonymous_variant 0.24
rpsA 1833841 c.300C>G synonymous_variant 0.24
rpsA 1833847 c.306C>G synonymous_variant 0.24
rpsA 1833856 c.315A>G synonymous_variant 0.19
rpsA 1833862 c.321G>T synonymous_variant 0.19
rpsA 1834297 c.756C>G synonymous_variant 0.17
rpsA 1834303 c.762T>G synonymous_variant 0.21
rpsA 1834306 c.765T>C synonymous_variant 0.17
rpsA 1834348 c.807T>C synonymous_variant 0.18
rpsA 1834366 c.825A>G synonymous_variant 0.14
rpsA 1834375 c.834G>A synonymous_variant 0.15
rpsA 1834396 c.855G>C synonymous_variant 0.14
rpsA 1834411 c.870T>C synonymous_variant 0.15
ndh 2102009 p.Ser345Asn missense_variant 0.15
ndh 2102023 c.1020G>C synonymous_variant 0.15
ndh 2102026 c.1017G>C synonymous_variant 0.15
ndh 2102050 c.993T>C synonymous_variant 0.15
ndh 2102053 c.990G>C synonymous_variant 0.15
ndh 2102059 c.984T>C synonymous_variant 0.14
ndh 2102065 c.978G>C synonymous_variant 0.15
ndh 2102077 c.966T>C synonymous_variant 0.14
ndh 2102092 c.951G>C synonymous_variant 0.15
ndh 2102098 c.945G>C synonymous_variant 0.18
ndh 2102104 c.939G>C synonymous_variant 0.13
ndh 2102131 p.Gln304Lys missense_variant 0.19
ndh 2102140 c.903C>G synonymous_variant 0.16
ndh 2102149 c.894C>T synonymous_variant 0.17
katG 2154959 c.1153C>A synonymous_variant 1.0
PPE35 2170236 c.376_377insG frameshift_variant 1.0
pncA 2290061 c.-820C>T upstream_gene_variant 0.97
kasA 2517947 c.-168C>T upstream_gene_variant 0.21
kasA 2518768 c.654C>G synonymous_variant 0.13
kasA 2518783 c.669T>C synonymous_variant 0.15
kasA 2518792 c.678C>G synonymous_variant 0.15
kasA 2518795 c.681C>G synonymous_variant 0.16
kasA 2518822 c.708C>G synonymous_variant 0.17
kasA 2518825 c.711T>C synonymous_variant 0.17
kasA 2518843 c.729T>C synonymous_variant 0.15
kasA 2518855 c.741C>G synonymous_variant 0.15
folC 2747798 c.-200A>T upstream_gene_variant 1.0
pepQ 2860252 p.Thr56Ser missense_variant 1.0
Rv2752c 3065651 p.Arg181Gly missense_variant 1.0
thyA 3074286 c.186T>C synonymous_variant 0.17
thyA 3074297 c.175C>T synonymous_variant 0.2
thyA 3074301 c.171C>T synonymous_variant 0.18
thyA 3074305 p.Ala56Val missense_variant 0.19
thyA 3074307 c.165A>G synonymous_variant 0.19
thyA 3074316 p.Phe52Leu missense_variant 0.18
thyA 3074322 c.150C>G synonymous_variant 0.18
thyA 3074325 c.147A>G synonymous_variant 0.18
thyA 3074334 c.138T>C synonymous_variant 0.18
thyA 3074339 p.Leu45Ile missense_variant 0.17
thyA 3074394 c.78C>G synonymous_variant 0.14
thyA 3074397 c.75A>G synonymous_variant 0.15
thyA 3074423 p.Pro17Ala missense_variant 0.14
Rv3083 3448855 p.Val118Ile missense_variant 1.0
rpoA 3877613 p.Ile299Val missense_variant 0.14
rpoA 3877638 c.870T>C synonymous_variant 0.15
rpoA 3877656 c.852T>C synonymous_variant 0.15
rpoA 3877679 p.Ala277Thr missense_variant 0.14
rpoA 3877765 p.Ala248Gly missense_variant 0.94
ddn 3986847 c.4_5insA frameshift_variant 1.0
clpC1 4038462 p.Ala748Glu missense_variant 0.15
clpC1 4038498 p.Ser736Thr missense_variant 0.17
clpC1 4038530 p.Glu725Asp missense_variant 0.17
clpC1 4038536 c.2169C>T synonymous_variant 0.16
clpC1 4038596 c.2109A>G synonymous_variant 0.17
clpC1 4038611 c.2094C>T synonymous_variant 0.16
clpC1 4038623 c.2082A>G synonymous_variant 0.17
clpC1 4038640 p.Asp689Asn missense_variant 0.14
clpC1 4038653 c.2052C>T synonymous_variant 0.16
clpC1 4038658 p.Lys683Gln missense_variant 0.18
clpC1 4038661 p.Ser682Thr missense_variant 0.17
clpC1 4038662 c.2043T>C synonymous_variant 0.16
clpC1 4038671 c.2034T>C synonymous_variant 0.17
clpC1 4038683 c.2022T>C synonymous_variant 0.16
clpC1 4038953 c.1752A>G synonymous_variant 0.15
clpC1 4038965 c.1740T>C synonymous_variant 0.16
clpC1 4038971 c.1734T>C synonymous_variant 0.16
clpC1 4038989 c.1716T>C synonymous_variant 0.14
clpC1 4038997 c.1708T>C synonymous_variant 0.17
clpC1 4039022 c.1683A>G synonymous_variant 0.15
clpC1 4039073 c.1632C>G synonymous_variant 0.15
clpC1 4039097 c.1608G>C synonymous_variant 0.14
clpC1 4039106 c.1599G>C synonymous_variant 0.14
clpC1 4039187 c.1518G>C synonymous_variant 0.15
clpC1 4039190 c.1515C>G synonymous_variant 0.15
clpC1 4039724 c.981A>G synonymous_variant 0.16
clpC1 4039793 c.912C>G synonymous_variant 0.14
clpC1 4039817 c.888A>T synonymous_variant 0.12
clpC1 4039820 c.885T>G synonymous_variant 0.15
clpC1 4039832 c.873C>G synonymous_variant 0.14
clpC1 4039850 c.855T>C synonymous_variant 0.18
clpC1 4039865 c.840T>C synonymous_variant 0.14
clpC1 4039898 c.807C>G synonymous_variant 0.15
clpC1 4039929 c.775_776delAGinsTC synonymous_variant 0.14
clpC1 4039946 c.759A>T synonymous_variant 0.16
clpC1 4039952 c.753T>C synonymous_variant 0.16
clpC1 4039958 c.747G>C synonymous_variant 0.17
clpC1 4039979 c.726C>G synonymous_variant 0.15
clpC1 4040354 c.351A>G synonymous_variant 0.18
clpC1 4040363 c.342A>C synonymous_variant 0.2
clpC1 4040369 c.336C>G synonymous_variant 0.2
clpC1 4040380 c.325T>C synonymous_variant 0.18
clpC1 4040387 c.318A>G synonymous_variant 0.21
clpC1 4040393 c.312G>C synonymous_variant 0.21
clpC1 4040411 c.294T>C synonymous_variant 0.21
clpC1 4040423 c.282A>G synonymous_variant 0.19
clpC1 4040426 c.279T>C synonymous_variant 0.19
clpC1 4040431 c.274T>C synonymous_variant 0.23
clpC1 4040441 c.264C>G synonymous_variant 0.21
clpC1 4040444 c.261C>G synonymous_variant 0.21
clpC1 4040450 c.255A>G synonymous_variant 0.2
clpC1 4040459 c.246C>G synonymous_variant 0.2
clpC1 4040465 c.240T>C synonymous_variant 0.21
clpC1 4040471 c.234T>C synonymous_variant 0.21
clpC1 4040477 c.228G>A synonymous_variant 0.2
clpC1 4040480 c.225T>C synonymous_variant 0.21
clpC1 4040528 c.177G>C synonymous_variant 0.14
clpC1 4040531 c.174T>C synonymous_variant 0.14
embC 4240632 p.Met257Thr missense_variant 0.14
embC 4240642 c.780G>C synonymous_variant 0.17
embC 4240645 c.783G>C synonymous_variant 0.17
embC 4240657 c.795G>C synonymous_variant 0.17
embC 4240671 p.Thr270Ile missense_variant 0.16
embC 4240678 c.816T>G synonymous_variant 0.16
embC 4240685 p.Thr275Ala missense_variant 0.16
embC 4240693 c.831T>C synonymous_variant 0.18
embC 4240706 p.Val282Thr missense_variant 0.15
embC 4240726 c.864G>C synonymous_variant 0.14
embC 4240780 c.918T>C synonymous_variant 0.19
embC 4240783 c.921G>C synonymous_variant 0.23
embC 4240789 c.927T>C synonymous_variant 0.23
embC 4240819 c.957A>G synonymous_variant 0.23
embC 4240825 c.963G>A synonymous_variant 0.22
embC 4240831 c.969T>G synonymous_variant 0.19
embC 4240867 c.1005T>G synonymous_variant 0.17
embC 4240870 c.1008T>C synonymous_variant 0.16
embC 4240879 c.1017G>C synonymous_variant 0.17
embC 4240880 p.Ala340Thr missense_variant 0.17
embC 4240885 c.1023T>C synonymous_variant 0.17
embC 4240897 c.1035C>G synonymous_variant 0.19
embC 4240900 c.1038A>G synonymous_variant 0.23
embC 4240919 c.1057_1059delCTCinsTTG synonymous_variant 0.18
embC 4240945 c.1083T>C synonymous_variant 0.16
embC 4240951 c.1089C>G synonymous_variant 0.15
embC 4240957 c.1095C>G synonymous_variant 0.16
embC 4240979 p.Thr373Gln missense_variant 0.16
embC 4240983 p.Ser374Asn missense_variant 0.16
embC 4240990 c.1128A>G synonymous_variant 0.16
embC 4240996 c.1134G>C synonymous_variant 0.16
embC 4241017 c.1155T>C synonymous_variant 0.15
embC 4241026 c.1164C>G synonymous_variant 0.15
embA 4245137 c.1905T>C synonymous_variant 0.15
embB 4247059 c.546C>G synonymous_variant 1.0
embB 4247144 p.Ser211Pro missense_variant 1.0
embB 4249369 c.2856T>C synonymous_variant 0.15
embB 4249381 c.2868A>G synonymous_variant 0.17
embB 4249469 p.Leu986Met missense_variant 0.14
embB 4249483 c.2970C>G synonymous_variant 0.15
embB 4249486 c.2973T>G synonymous_variant 0.14
ubiA 4269553 p.Ala94Gly missense_variant 1.0
gid 4408259 c.-57G>C upstream_gene_variant 1.0