lineage | Count |
---|---|
lineage4.1.2.1 | 15 |
38 | |
lineage1.2.2.2 | 2 |
lineage2.2.1 | 9 |
lineage4 | 7 |
lineage1.1 | 1 |
lineage4.9 | 41 |
lineage3.1 | 2 |
lineage4.3.3 | 3 |
lineage4.7 | 1 |
lineage4.3.4.2.1 | 1 |
La1 | 1 |
lineage2.2 | 1 |
La1.8.1 | 2 |
La1.3 | 5 |
La1.2 | 1 |
lineage4.9;La1.3 | 2 |
lineage4.8 | 2 |
lineage4.1.2.1.1 | 1 |
lineage4.3.4.1 | 1 |
lineage4.3.2 | 1 |
lineage3 | 2 |
lineage2 | 1 |
lineage2.2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage4.4.1.1 | 2 |
lineage1.2.1.2.1 | 1 |
La1.4 | 1 |
lineage4.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.1.1.3 | 1 |
lineage4.5 | 1 |
lineage4.1.1 | 1 |
lineage4.2.2 | 1 |
spoligotype | Count |
---|---|
None | 153 |
ID | Drug resistance | Lineage | Country iso2 | ERR2517489 | Sensitive | lineage4.1.2.1 | nl | SRR6325447 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | ERR4799731 | Pre-XDR-TB | lineage1.2.2.2 | in | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR3077978 | Other | lineage1.1 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR294248 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323036 | HR-TB | None | ERR5311099 | HR-TB | None | ERR323055 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | SRR7496471 | Sensitive | None | ERR323038 | HR-TB | None | ERR323063 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR3283017 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063855 | Other | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797083 | HR-TB | None | ERR4188350 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769408 | Other | La1.3 | None | ERR4769418 | Other | La1.2 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769516 | Other | La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR4769552 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4796577 | MDR-TB | None | ERR4798823 | HR-TB | lineage4 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR6358837 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736839 | Other | None | ERR8976043 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9786076 | Sensitive | lineage3 | None | SRR069989 | HR-TB | lineage2 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR13837579 | HR-TB | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861251 | RR-TB | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861326 | Other | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861596 | Other | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR1640750 | HR-TB | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR3675486 | HR-TB | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR4815471 | Other | lineage4.9 | None | ERR4814639 | HR-TB | lineage4 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | SRR3675383 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR3275215 | Other | lineage4.1.2.1 | nl | ERR4816964 | Other | lineage4.9 | None | SRR3675545 | HR-TB | None | SRR3675558 | HR-TB | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2229143 | Other | lineage4.1.1 | None | ERR4820318 | Other | lineage4.2.2 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR4819357 | Other | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR2693239 | HR-TB | None | ERR4819462 | Other | lineage4 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR4821053 | Other | lineage3 | None | ERR4819933 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | ERR2446118 | Other | lineage4.1.2.1 | nl | SRR6045952 | HR-TB | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6325444 | HR-TB | None |
---|