lineage | Count |
---|---|
89 | |
lineage4.1.1.3 | 3 |
lineage4.3.4.2.1 | 2 |
lineage3;lineage2.1 | 1 |
lineage4 | 19 |
lineage4.3 | 1 |
lineage2.1 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage2.2.1 | 16 |
lineage4.1 | 2 |
lineage4.1.1 | 1 |
lineage3 | 6 |
lineage4.8 | 4 |
lineage4.1.2.1 | 13 |
lineage4.9 | 52 |
lineage5.2 | 2 |
lineage2.2 | 9 |
lineage4.3.3 | 3 |
lineage1.1 | 1 |
lineage4.6.2.2 | 2 |
lineage3.1 | 2 |
lineage4.3.4.1 | 2 |
La2 | 1 |
lineage4.4.2 | 1 |
lineage4.3.4 | 2 |
lineage4.3.4.1;La1.7 | 1 |
La1 | 1 |
La1.8.1 | 3 |
lineage6.1.1 | 2 |
lineage3.1.2 | 1 |
lineage4.3.2 | 1 |
La1.2 | 1 |
lineage4.1.2.1.1 | 1 |
lineage1.1.3.2 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage2 | 2 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage4.6.1.1 | 1 |
lineage2.2.2 | 2 |
La3 | 1 |
lineage4.4.1.1 | 2 |
lineage2.2.1.2 | 2 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage1.2.1.2 | 1 |
lineage4.5 | 1 |
lineage1.2.1.2.1 | 1 |
lineage4.2;La1.7 | 1 |
spoligotype | Count |
---|---|
None | 267 |
ID | Drug resistance | Lineage | Country iso2 | SRR6325445 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675488 | HR-TB | None | SRR3675482 | HR-TB | None | ERR4815310 | Other | None | ERR161033 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675222 | Other | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675501 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675270 | HR-TB | None | ERR4815550 | Other | lineage4 | None | ERR176643 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | ERR176740 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR176751 | HR-TB | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | ERR212033 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | SRR3675558 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | SRR3675574 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2446566 | Other | lineage4.1 | None | SRR5341373 | HR-TB | lineage4 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR2514692 | Other | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341293 | HR-TB | lineage4 | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341315 | Sensitive | None | SRR5341313 | HR-TB | None | ERR2515228 | Other | lineage2.2.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341470 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR6045526 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR5535933 | HR-TB | None | SRR6045795 | HR-TB | lineage2.2.1 | None | ERR278594 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044918 | Sensitive | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6046046 | Other | None | SRR6045952 | HR-TB | None | SRR6045053 | Other | None | SRR6045327 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046385 | Other | lineage4.9 | None | ERR4830353 | Other | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046225 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR294248 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR3077978 | Other | lineage1.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR5311099 | HR-TB | None | SRR6982365 | Other | lineage2.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323036 | HR-TB | None | ERR11465801 | Other | lineage4.3.4.1 | None | ERR502524 | HR-TB | La2 | None | ERR323038 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323041 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323039 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323045 | HR-TB | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323063 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR1023525 | HR-TB | lineage4 | None | DRR188519 | Other | lineage4.4.2 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063858 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR10796631 | Other | lineage4.3.4 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR12015084 | Other | lineage4.8 | None | ERR11465802 | Other | lineage4.3.4.1;La1.7 | None | ERR3283017 | HR-TB | None | ERR3283028 | Other | None | ERR3283010 | Other | La1 | None | ERR3283014 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797015 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797048 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797087 | Sensitive | lineage4 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4188350 | HR-TB | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4798504 | Other | lineage3 | None | ERR4769452 | HR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR12015085 | Other | lineage4.8 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6358837 | HR-TB | None | ERR702404 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736835 | HR-TB | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6198317 | Other | La1.2 | None | ERR6359066 | HR-TB | lineage4 | None | ERR736839 | Other | None | ERR736865 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786843 | Other | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR987722 | HR-TB | None | ERR9787014 | Other | lineage6.1.1 | None | SRR069989 | HR-TB | lineage2 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR9896144 | Other | lineage3 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | ERR990545 | Other | lineage3 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1169306 | Other | None | SRR1172310 | HR-TB | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173788 | Other | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1183049 | Other | lineage2.2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR13837579 | HR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13861324 | Other | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861224 | Sensitive | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861258 | Other | lineage4.9 | None | SRR13861302 | Sensitive | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861447 | RR-TB | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR14782405 | HR-TB | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR1640750 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | ERR176779 | HR-TB | None | ERR176778 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None |
---|