Rv0668 - c.2139C>G


Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
16 Sensitive 14 RR-TB 91 HR-TB 51 MDR-TB 5 Pre-XDR-TB 2 XDR-TB 100 Other
lineage Counts
lineage Count
M.canetti;lineage2.1;lineage4.9 24
lineage1.2.1.2.1 1
lineage4 3
lineage5.2 2
lineage4.9 60
lineage2.2.1 12
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
lineage1.1.2;lineage4 1
lineage4.1.1;lineage4.9 1
lineage2.2.2 1
La1.7.1 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
La3;M.canetti;lineage2.1;lineage4.9 12
lineage4.1.2.1 11
La1.7;lineage4.9;lineage7 3
La1.7;lineage4.2 1
lineage2.2.1;lineage4.9 1
6
lineage4.3.2;lineage4.9 1
lineage4.4.1.1 2
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 5
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
La1.7;M.canetti;lineage4.9 3
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
La3;M.canetti;lineage4.9 2
La1.7;lineage4.9 8
lineage4.3.4 1
lineage4.1.1.3 6
lineage2.2 3
La3;M.canetti;lineage2.1;lineage3.1 1
lineage4.6.3;lineage4.9 1
lineage2.2.1;lineage4 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.9;lineage9 2
La3;lineage4.9 12
lineage4.8 4
lineage4.3.4.2.1 2
La1.7;lineage4.3.4.1 1
lineage3.1.2.2 1
M.canetti;lineage2.2.2;lineage6.2 2
La1.2 1
lineage4.6.2.2 2
lineage3 6
lineage4.5 1
M.canetti;lineage4.9 3
La1.8.1 2
M.canetti;lineage2.1;lineage6.3 1
lineage4.1.1.1 1
lineage2.2.1.2 2
lineage2.1;lineage4.9;lineage6.3 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage4.9;lineage6.3 2
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
La3;M.canetti;lineage3.1 1
M.canetti;lineage2.1;lineage3 1
M.canetti;lineage2.2 3
lineage3.1.2.1;lineage4 1
La3;lineage2.1;lineage4.9 1
lineage2.1;lineage4.9 5
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La2;lineage4.9 1
lineage1;lineage4.9 1
lineage6.1.1 2
lineage4.1.2.1.1 1
lineage4.3.4.1 1
M.canetti;lineage2.1;lineage4.1.2.1 1
La1.7.1;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage3.1.2.1 1
M.canetti;lineage2.1 1
lineage3.1.2 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;M.canetti;lineage4.8;lineage4.9 1
La1.7 2
M.canetti;lineage2.1;lineage4 1
lineage4.4.2 1
lineage1.1 1
La1.7.1;La1.7.X-unk4 1
lineage4.3.2 1
M.canetti;lineage4.3.1;lineage4.9 1
lineage4.1 1
lineage2.1;lineage4.3.2;lineage4.9 1
La2;lineage4.9;lineage9 1
spoligotype Counts
spoligotype Count
None 279
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1510066 Other lineage1.2.1.2.1 None
SRR1181349 Sensitive lineage4 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9119500 MDR-TB lineage5.2 None
SRR1172885 HR-TB lineage4.9 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR20969708 HR-TB lineage2.2.1 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4817692 HR-TB lineage1.1.2;lineage4 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR6325442 HR-TB lineage4.1.1;lineage4.9 None
SRR069989 HR-TB lineage2.2.2 None
SRR7240492 HR-TB La1.7.1 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR29097026 Other lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
ERR2041725 MDR-TB lineage4.1.2.1 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR23961559 Other La1.7;lineage4.2 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9786843 Other None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR212001 HR-TB None
ERR212033 Other lineage4.9 None
SRR6044815 Other lineage4.9 None
ERR176778 HR-TB lineage4.9 None
SRR1180226 HR-TB lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
SRR1173453 Other lineage4.4.1.1 None
SRR13861322 Other lineage4.9 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6046878 Other lineage4.9 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
SRR1175052 HR-TB lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675385 Other La1.7;lineage4.9 None
ERR736817 HR-TB lineage4.3.4 None
ERR2199988 MDR-TB lineage4.1.1.3 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1183049 RR-TB lineage2.2 None
SRR3675482 Other lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR550637 MDR-TB lineage4.1.1.3 None
ERR8665994 Other lineage4.9 None
ERR5162090 RR-TB lineage4.9 None
ERR3797083 RR-TB lineage4.9 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
SRR1163221 MDR-TB lineage4.1.2.1 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR1169249 Other lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
SRR6045526 Other lineage4.9 None
ERR181887 Other lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
SRR1169306 Other La3;lineage4.9 None
ERR2514327 HR-TB lineage4.8 None
SRR6045347 Other lineage4.9 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR12015085 Other lineage4.8 None
ERR11465802 Other La1.7;lineage4.3.4.1 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2660539 Other lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR6198317 Other La1.2 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR3675248 Other lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4872094 MDR-TB lineage5.2 None
ERR1063862 HR-TB lineage4.9 None
ERR9896144 Other lineage3 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
SRR13861153 Other lineage4.9 None
SRR13423544 Other lineage4.5 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR7821163 Other lineage2.2.1 None
ERR212138 HR-TB lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
SRR20970016 Other lineage2.2.1 None
SRR29096387 Sensitive M.canetti;lineage4.9 None
SRR1791696 Other La1.8.1 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
SRR13861224 Sensitive lineage4.9 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341412 Pre-XDR-TB lineage3 None
SRR6325447 HR-TB lineage4.1.1.1 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR1172796 Sensitive lineage2.2.1.2 None
ERR176751 Other lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675494 RR-TB lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SAMN02414850 Other lineage4.1.2.1 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR3283057 Sensitive La3;lineage4.9 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR6359082 Other lineage4.9 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
SRR11662690 HR-TB lineage4.9 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR987722 MDR-TB None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1162864 Other lineage4.1.2.1 None
SRR3675487 Other M.canetti;lineage4.9 None
ERR2514821 Sensitive lineage2.2.1 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR1181289 Other lineage2.2.1 None
SRR1167384 Other La3;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
SRR28351455 Other lineage3.1.2.1;lineage4 None
ERR1063858 HR-TB lineage4.9 None
ERR176651 Other lineage4.9 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3468607 Other lineage4.9 None
SRR1165506 Other lineage4.1.2.1 None
ERR4769417 Pre-XDR-TB lineage4.9 None
SRR1175127 Other lineage2.2.1.2 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
SRR6045053 Other lineage4 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR6046046 Other lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
SRR3675492 Other La1.7;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR323039 HR-TB La2;lineage4.9 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1167055 Other lineage4.1.2.1 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR13861146 RR-TB lineage4.9 None
SRR3675269 RR-TB lineage4.9 None
ERR4799025 Other lineage4.8 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR161034 Other lineage4.3.4.2.1 None
ERR736839 HR-TB M.canetti;lineage4.9 None
ERR3283030 HR-TB lineage4.9 None
ERR3283031 Sensitive La3;lineage4.9 None
ERR2446566 Other lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
ERR3799304 Other lineage6.1.1 None
ERR3797063 Sensitive La3;lineage4.9 None
ERR4769450 Other lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR5917710 Other lineage4.1.2.1 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR11465801 Other lineage4.3.4.1 None
ERR3283011 Other La3;lineage4.9 None
ERR9787014 Other lineage6.1.1 None
ERR2041726 MDR-TB lineage4.1.2.1 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9786525 Other lineage4 None
ERR9786656 Sensitive lineage4.1.2.1 None
ERR990545 Other lineage3 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR176779 HR-TB lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR13861332 Other lineage4.9 None
SRR13861510 Other lineage4.9 None
ERR11466044 Other lineage4.1.1.3 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR987729 HR-TB lineage3.1.2.1 None
SRR17832802 HR-TB lineage3 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3797064 Other La3;lineage4.9 None
SRR1173767 MDR-TB lineage4.4.1.1 None
ERR176643 Other La3;lineage4.9 None
SRR20969731 Other lineage2.2.1 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
SRR29096150 Other lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR3675488 Other La1.7;lineage4.9 None
SRR1165423 RR-TB lineage4.1.2.1 None
ERR4769452 Other lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
SRR6044835 Other lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
ERR212125 HR-TB lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1165584 Other lineage4.1.2.1 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR11252612 Other La3;lineage4.9 None
ERR2514692 Other None
SRR7070027 Sensitive lineage3.1.2 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR181824 HR-TB lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR3675243 Other lineage4.9 None
SRR1640750 Other None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1180137 Other lineage2.2.1 None
ERR12015084 Other lineage4.8 None
SRR3675222 Other La1.7 None
SRR1172310 HR-TB lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675270 Other lineage4.9 None
SRR3675507 Other lineage4.9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
SRR5535933 Other lineage4.9 None
SRR3675501 Other La1.7;lineage4.9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR1181020 Other lineage2.2.1 None
SRR1165628 Other La3;lineage4.9 None
ERR4830353 Other La1.7 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR14782054 Other lineage4.9 None
DRR188519 Other lineage4.4.2 None
ERR3077978 Other lineage1.1 None
SRR6046593 Other lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR4821053 Other lineage3 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR772255 MDR-TB lineage4.3.2 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR4798504 RR-TB lineage3 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR9786526 Other lineage4.1 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR8976043 HR-TB lineage2.2 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
SRR12006550 Sensitive None
SRR12416840 MDR-TB lineage4.9 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None