Run ID: ERR12015085
Sample name:
Date: 2024-10-05T03:58:39.332715
Number of reads: 412363
Percentage reads mapped: 99.04
Median coverage: 14.0
Strain: lineage4.8
Spoligotype:
Drug-resistance: Other
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4 | Euro-American | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | RD219 | 0.99 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | rrs | n.462C>T | Uncertain significance | Mutation from literature |
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|---|---|---|---|---|---|---|
rrs | 1472307 | n.462C>T | non_coding_transcript_exon_variant | 0.3 | streptomycin | Uncertain significance | Mutation from literature |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
dnaA | 371 | p.Pro124Leu | missense_variant | 1.0 | isoniazid | Not assoc w R |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoB | 761084 | c.1278C>G | synonymous_variant | 0.33 | rifampicin | |
rpoB | 761999 | c.2193G>C | synonymous_variant | 0.4 | rifampicin | |
rpoB | 762014 | c.2208C>T | synonymous_variant | 0.42 | rifampicin | |
rpoB | 762017 | c.2211A>G | synonymous_variant | 0.42 | rifampicin | Not assoc w R - Interim |
rpoB | 762047 | c.2241G>A | synonymous_variant | 0.52 | rifampicin | Not assoc w R - Interim |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.62 | rifampicin | Not assoc w R - Interim |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.6 | rifampicin | Not assoc w R - Interim |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.6 | rifampicin | Not assoc w R - Interim |
rpoB | 762074 | c.2268C>G | synonymous_variant | 0.57 | rifampicin | |
rpoB | 762083 | c.2277T>C | synonymous_variant | 0.56 | rifampicin | Not assoc w R - Interim |
rpoB | 762086 | c.2280G>C | synonymous_variant | 0.56 | rifampicin | Not assoc w R - Interim |
rpoB | 762101 | c.2295C>G | synonymous_variant | 0.57 | rifampicin | Not assoc w R - Interim |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.52 | rifampicin | Uncertain significance |
rpoB | 762131 | c.2325C>G | synonymous_variant | 0.5 | rifampicin | |
rpoB | 762143 | c.2337T>C | synonymous_variant | 0.5 | rifampicin | |
rpoB | 762149 | c.2343G>C | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.46 | rifampicin | Not assoc w R - Interim |
rpoB | 762221 | c.2415G>A | synonymous_variant | 0.45 | rifampicin | |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.39 | rifampicin | Not assoc w R - Interim |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.4 | rifampicin | Not assoc w R - Interim |
rpoB | 762257 | c.2451C>G | synonymous_variant | 0.39 | rifampicin | |
rpoB | 762284 | c.2478G>T | synonymous_variant | 0.31 | rifampicin | |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoB | 762296 | c.2490G>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoB | 762317 | c.2511A>G | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoB | 762362 | p.Glu852Asp | missense_variant | 0.23 | rifampicin | |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.31 | rifampicin | |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoC | 763576 | c.207C>G | synonymous_variant | 0.29 | rifampicin | |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoC | 763600 | c.231C>T | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoC | 763603 | c.234C>T | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.33 | rifampicin | |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.29 | rifampicin | Not assoc w R - Interim |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoC | 765508 | c.2139C>G | synonymous_variant | 0.39 | rifampicin | Not assoc w R - Interim |
rpoC | 765517 | c.2148C>G | synonymous_variant | 0.42 | rifampicin | Not assoc w R - Interim |
rpoC | 765529 | c.2160C>T | synonymous_variant | 0.39 | rifampicin | |
rpoC | 765541 | c.2172C>G | synonymous_variant | 0.39 | rifampicin | |
rpoC | 765550 | c.2181C>T | synonymous_variant | 0.37 | rifampicin | |
rpoC | 765553 | c.2184C>T | synonymous_variant | 0.37 | rifampicin | Not assoc w R - Interim |
rpoC | 765556 | c.2187G>C | synonymous_variant | 0.37 | rifampicin | |
rpoC | 765559 | c.2190G>C | synonymous_variant | 0.37 | rifampicin | |
rpoC | 765574 | c.2205C>T | synonymous_variant | 0.39 | rifampicin | |
rpoC | 765592 | c.2223C>T | synonymous_variant | 0.4 | rifampicin | |
rpoC | 765631 | p.Asp754Glu | missense_variant | 0.5 | rifampicin | |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.32 | rifampicin | Not assoc w R - Interim |
rpoC | 765734 | c.2365T>C | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoC | 765772 | c.2403C>G | synonymous_variant | 0.32 | rifampicin | |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.5 | rifampicin | |
rpoC | 766447 | c.3078T>C | synonymous_variant | 0.55 | rifampicin | |
rpoC | 766456 | c.3087C>T | synonymous_variant | 0.45 | rifampicin | Not assoc w R - Interim |
rpoC | 766459 | c.3090G>T | synonymous_variant | 0.45 | rifampicin | |
rpoC | 766480 | c.3111C>A | synonymous_variant | 0.61 | rifampicin | |
rpoC | 766483 | c.3114G>C | synonymous_variant | 0.72 | rifampicin | |
rpoC | 766501 | c.3132G>C | synonymous_variant | 0.67 | rifampicin | |
rpoC | 766522 | c.3153C>G | synonymous_variant | 0.75 | rifampicin | |
rpoC | 766528 | c.3159T>C | synonymous_variant | 0.76 | rifampicin | |
rpoC | 766531 | c.3162G>C | synonymous_variant | 0.76 | rifampicin | |
rpoC | 766534 | c.3165C>G | synonymous_variant | 0.71 | rifampicin | |
rpoC | 766549 | c.3180G>C | synonymous_variant | 0.67 | rifampicin | |
rpoC | 766573 | c.3204T>C | synonymous_variant | 0.68 | rifampicin | |
rpoC | 766582 | c.3213C>G | synonymous_variant | 0.65 | rifampicin | |
rpoC | 766583 | p.Gly1072Ser | missense_variant | 0.65 | rifampicin | |
rpoC | 766591 | c.3222A>G | synonymous_variant | 0.65 | rifampicin | |
rpoC | 766594 | c.3225G>C | synonymous_variant | 0.62 | rifampicin | |
rpoC | 766597 | c.3228C>G | synonymous_variant | 0.57 | rifampicin | Not assoc w R - Interim |
rpoC | 766607 | p.Ile1080Leu | missense_variant | 0.5 | rifampicin | |
rpoC | 766630 | c.3261G>T | synonymous_variant | 0.48 | rifampicin | |
rpoC | 766657 | c.3288A>G | synonymous_variant | 0.52 | rifampicin | |
rpoC | 766660 | c.3291G>C | synonymous_variant | 0.52 | rifampicin | |
rpoC | 766666 | c.3297C>T | synonymous_variant | 0.5 | rifampicin | Not assoc w R - Interim |
rpoC | 766672 | c.3303T>C | synonymous_variant | 0.48 | rifampicin | |
rpoC | 766690 | c.3321G>C | synonymous_variant | 0.42 | rifampicin | |
rpoC | 766693 | c.3324C>T | synonymous_variant | 0.44 | rifampicin | |
rpoC | 766711 | c.3342C>T | synonymous_variant | 0.42 | rifampicin | Not assoc w R - Interim |
rpoC | 766726 | c.3357T>C | synonymous_variant | 0.57 | rifampicin | |
rpoC | 766738 | c.3369G>C | synonymous_variant | 0.54 | rifampicin | |
rpoC | 766765 | c.3396A>C | synonymous_variant | 0.56 | rifampicin | Not assoc w R - Interim |
rpoC | 766774 | c.3405T>C | synonymous_variant | 0.59 | rifampicin | |
rpoC | 766801 | c.3432C>A | synonymous_variant | 0.54 | rifampicin | |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.54 | rifampicin | Not assoc w R - Interim |
rpoC | 766807 | c.3438T>C | synonymous_variant | 0.54 | rifampicin | Not assoc w R - Interim |
rpoC | 766861 | c.3492G>C | synonymous_variant | 0.48 | rifampicin | Not assoc w R - Interim |
rpoC | 766864 | c.3495G>C | synonymous_variant | 0.48 | rifampicin | |
rpoC | 766894 | c.3525T>C | synonymous_variant | 0.45 | rifampicin | |
rpoC | 766895 | c.3526T>C | synonymous_variant | 0.45 | rifampicin | |
rpoC | 766900 | c.3531T>C | synonymous_variant | 0.39 | rifampicin | |
rpoC | 766915 | c.3546C>T | synonymous_variant | 0.39 | rifampicin | |
rpoC | 766921 | c.3552G>C | synonymous_variant | 0.37 | rifampicin | |
rpoC | 766924 | p.Glu1185Asp | missense_variant | 0.37 | rifampicin | |
rpoC | 766933 | c.3564A>G | synonymous_variant | 0.44 | rifampicin | |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 | streptomycin | Not assoc w R |
rpsL | 781808 | c.249C>T | synonymous_variant | 0.29 | streptomycin | |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.37 | streptomycin | |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.38 | streptomycin | |
rpsL | 781838 | c.279G>C | synonymous_variant | 0.38 | streptomycin | |
rpsL | 781841 | c.282C>G | synonymous_variant | 0.45 | streptomycin | |
rpsL | 781865 | c.306G>C | synonymous_variant | 0.44 | streptomycin | |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.44 | streptomycin | |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.44 | streptomycin | |
rpsL | 781892 | c.333A>G | synonymous_variant | 0.5 | streptomycin | |
rpsL | 781898 | c.339A>T | synonymous_variant | 0.52 | streptomycin | |
rpsL | 781916 | c.357T>C | synonymous_variant | 0.5 | streptomycin | |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.41 | streptomycin | Uncertain significance |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.24 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.4 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.4 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.39 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.4 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.21 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | ||||||
amikacin | Uncertain significance | |||||
rrs | 1473123 | n.1278delAinsTT | non_coding_transcript_exon_variant | 0.16 | kanamycin | |
capreomycin | ||||||
streptomycin | ||||||
amikacin | ||||||
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.19 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 0.82 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.16 | kanamycin | Uncertain significance |
capreomycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.12 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.19 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1473839 | n.182G>T | non_coding_transcript_exon_variant | 0.21 | capreomycin | |
linezolid | ||||||
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.13 | capreomycin | |
linezolid | ||||||
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.12 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 | capreomycin | Not assoc w R |
linezolid | Not assoc w R | |||||
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.18 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.2 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.27 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.3 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474282 | n.625G>A | non_coding_transcript_exon_variant | 0.19 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1474288 | n.632_634delCTT | non_coding_transcript_exon_variant | 0.19 | capreomycin | |
linezolid | ||||||
rrl | 1474294 | n.638_649delCTCTCCGGAGGA | non_coding_transcript_exon_variant | 0.18 | capreomycin | |
linezolid | ||||||
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 0.21 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.22 | capreomycin | |
linezolid | ||||||
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.34 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.36 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474376 | n.719T>C | non_coding_transcript_exon_variant | 0.39 | capreomycin | |
linezolid | ||||||
rrl | 1474409 | n.756_766delACCCACACGCG | non_coding_transcript_exon_variant | 0.35 | capreomycin | |
linezolid | ||||||
rrl | 1474427 | n.770A>C | non_coding_transcript_exon_variant | 0.33 | capreomycin | |
linezolid | ||||||
rrl | 1474429 | n.772G>C | non_coding_transcript_exon_variant | 0.33 | capreomycin | |
linezolid | ||||||
rrl | 1474431 | n.774_775delGCinsTTTGGG | non_coding_transcript_exon_variant | 0.33 | capreomycin | |
linezolid | ||||||
rrl | 1474435 | n.780_783delGAAT | non_coding_transcript_exon_variant | 0.33 | capreomycin | |
linezolid | ||||||
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.46 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.38 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.36 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474823 | n.1166C>T | non_coding_transcript_exon_variant | 0.36 | capreomycin | |
linezolid | ||||||
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.37 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1474904 | n.1247G>A | non_coding_transcript_exon_variant | 0.33 | capreomycin | |
linezolid | ||||||
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.24 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475088 | n.1431A>T | non_coding_transcript_exon_variant | 0.31 | capreomycin | |
linezolid | ||||||
rrl | 1475249 | n.1592T>C | non_coding_transcript_exon_variant | 0.14 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475252 | n.1595C>T | non_coding_transcript_exon_variant | 0.14 | capreomycin | |
linezolid | ||||||
rrl | 1475266 | n.1609T>C | non_coding_transcript_exon_variant | 0.18 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475267 | n.1610G>A | non_coding_transcript_exon_variant | 0.18 | capreomycin | |
linezolid | ||||||
rrl | 1475275 | n.1618C>T | non_coding_transcript_exon_variant | 0.17 | capreomycin | |
linezolid | ||||||
rrl | 1475276 | n.1619T>C | non_coding_transcript_exon_variant | 0.17 | capreomycin | |
linezolid | ||||||
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.12 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.13 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.16 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475369 | n.1712G>C | non_coding_transcript_exon_variant | 0.14 | capreomycin | |
linezolid | ||||||
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.15 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.12 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.16 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.19 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475599 | n.1942A>G | non_coding_transcript_exon_variant | 0.15 | capreomycin | |
linezolid | Uncertain significance | |||||
rrl | 1475657 | n.2000A>G | non_coding_transcript_exon_variant | 0.15 | capreomycin | |
linezolid | ||||||
rrl | 1475659 | n.2002G>T | non_coding_transcript_exon_variant | 0.15 | capreomycin | |
linezolid | ||||||
rrl | 1475758 | n.2104delC | non_coding_transcript_exon_variant | 0.32 | capreomycin | |
linezolid | ||||||
rrl | 1475765 | n.2111delG | non_coding_transcript_exon_variant | 0.35 | capreomycin | |
linezolid | ||||||
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.43 | capreomycin | |
linezolid | ||||||
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.27 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.2 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.2 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.19 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.13 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476299 | n.2642C>T | non_coding_transcript_exon_variant | 0.13 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.17 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.17 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476689 | n.3032A>T | non_coding_transcript_exon_variant | 0.18 | capreomycin | |
linezolid | ||||||
rrl | 1476690 | n.3033C>T | non_coding_transcript_exon_variant | 0.18 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1476693 | n.3036G>A | non_coding_transcript_exon_variant | 0.18 | capreomycin | |
linezolid | ||||||
rrl | 1476695 | n.3038T>A | non_coding_transcript_exon_variant | 0.17 | capreomycin | |
linezolid | ||||||
rrl | 1476716 | n.3059A>C | non_coding_transcript_exon_variant | 0.14 | capreomycin | Uncertain significance |
linezolid | ||||||
rpsA | 1833589 | c.48A>T | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1833667 | c.126C>G | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.24 | pyrazinamide | |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.26 | pyrazinamide | |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.33 | pyrazinamide | |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.33 | pyrazinamide | |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.42 | pyrazinamide | |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.38 | pyrazinamide | |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.28 | pyrazinamide | |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.29 | pyrazinamide | |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1833971 | c.430C>T | synonymous_variant | 0.29 | pyrazinamide | |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.29 | pyrazinamide | |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.3 | pyrazinamide | |
rpsA | 1834012 | c.471G>C | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.34 | pyrazinamide | |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.32 | pyrazinamide | |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.27 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.27 | pyrazinamide | |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.39 | pyrazinamide | Not assoc w R - Interim |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 | capreomycin | Not assoc w R |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.24 | pyrazinamide | |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.21 | pyrazinamide | |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 | bedaquiline | Not assoc w R - Interim |
clofazimine | Not assoc w R | |||||
alr | 3840764 | c.657G>C | synonymous_variant | 1.0 | cycloserine | |
rpoA | 3877656 | c.852T>C | synonymous_variant | 0.4 | rifampicin | Not assoc w R - Interim |
rpoA | 3877668 | c.840A>G | synonymous_variant | 0.35 | rifampicin | |
rpoA | 3877677 | p.Ala277Ser | missense_variant | 0.38 | rifampicin | |
rpoA | 3877680 | c.828G>C | synonymous_variant | 0.38 | rifampicin | Not assoc w R - Interim |
rpoA | 3877686 | c.822A>G | synonymous_variant | 0.38 | rifampicin | Not assoc w R - Interim |
rpoA | 3877692 | c.816G>C | synonymous_variant | 0.38 | rifampicin | Not assoc w R - Interim |
rpoA | 3877704 | c.804G>C | synonymous_variant | 0.32 | rifampicin | |
rpoA | 3877737 | c.771G>C | synonymous_variant | 0.32 | rifampicin | |
clpC1 | 4038530 | p.Glu725Asp | missense_variant | 0.37 | pyrazinamide | |
clpC1 | 4038587 | c.2118C>T | synonymous_variant | 0.28 | pyrazinamide | |
clpC1 | 4038596 | c.2109A>G | synonymous_variant | 0.44 | pyrazinamide | |
clpC1 | 4038602 | c.2103G>C | synonymous_variant | 0.39 | pyrazinamide | |
clpC1 | 4038623 | c.2082A>G | synonymous_variant | 0.38 | pyrazinamide | |
clpC1 | 4038640 | p.Asp689Asn | missense_variant | 0.42 | pyrazinamide | |
clpC1 | 4038653 | c.2052C>T | synonymous_variant | 0.42 | pyrazinamide | |
clpC1 | 4038656 | p.Lys683Gln | missense_variant | 0.35 | pyrazinamide | |
clpC1 | 4038661 | p.Ser682Thr | missense_variant | 0.44 | pyrazinamide | |
clpC1 | 4038662 | c.2043T>C | synonymous_variant | 0.44 | pyrazinamide | |
clpC1 | 4038671 | c.2034T>C | synonymous_variant | 0.51 | pyrazinamide | |
clpC1 | 4038683 | c.2022T>C | synonymous_variant | 0.49 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038695 | c.2010C>G | synonymous_variant | 0.55 | pyrazinamide | |
clpC1 | 4038701 | c.2004G>C | synonymous_variant | 0.52 | pyrazinamide | |
clpC1 | 4038704 | c.2001T>C | synonymous_variant | 0.52 | pyrazinamide | |
clpC1 | 4038707 | c.1998C>G | synonymous_variant | 0.52 | pyrazinamide | |
clpC1 | 4038710 | c.1995G>C | synonymous_variant | 0.52 | pyrazinamide | |
clpC1 | 4038713 | c.1992T>C | synonymous_variant | 0.52 | pyrazinamide | |
clpC1 | 4038740 | c.1965G>C | synonymous_variant | 0.55 | pyrazinamide | |
clpC1 | 4038755 | c.1950G>T | synonymous_variant | 0.62 | pyrazinamide | |
clpC1 | 4038773 | c.1932T>C | synonymous_variant | 0.64 | pyrazinamide | |
clpC1 | 4038782 | c.1923G>C | synonymous_variant | 0.63 | pyrazinamide | |
clpC1 | 4038790 | c.1915C>T | synonymous_variant | 0.63 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.62 | pyrazinamide | |
clpC1 | 4038815 | c.1890G>C | synonymous_variant | 0.57 | pyrazinamide | |
clpC1 | 4038863 | c.1842G>C | synonymous_variant | 0.57 | pyrazinamide | |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.63 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.6 | pyrazinamide | |
clpC1 | 4038914 | c.1791G>C | synonymous_variant | 0.6 | pyrazinamide | |
clpC1 | 4038923 | c.1780_1782delCTAinsTTG | synonymous_variant | 0.6 | pyrazinamide | |
clpC1 | 4038953 | c.1752A>G | synonymous_variant | 0.56 | pyrazinamide | |
clpC1 | 4038965 | c.1740T>C | synonymous_variant | 0.56 | pyrazinamide | |
clpC1 | 4038971 | c.1734T>C | synonymous_variant | 0.54 | pyrazinamide | |
clpC1 | 4038974 | c.1731T>C | synonymous_variant | 0.54 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.44 | pyrazinamide | |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.44 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.46 | pyrazinamide | |
clpC1 | 4039037 | c.1668T>C | synonymous_variant | 0.32 | pyrazinamide | |
clpC1 | 4039064 | c.1641C>T | synonymous_variant | 0.29 | pyrazinamide | |
panD | 4044017 | p.Ala89Thr | missense_variant | 1.0 | pyrazinamide | |
embC | 4242643 | c.2781C>T | synonymous_variant | 1.0 | ethambutol | Not assoc w R |
embA | 4245578 | c.2346G>A | synonymous_variant | 1.0 | ethambutol | Not assoc w R - Interim |
ethA | 4328338 | c.-865G>A | upstream_gene_variant | 1.0 | ethionamide | |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 | kanamycin | Not assoc w R |
capreomycin | Not assoc w R | |||||
amikacin | Not assoc w R |