lineage | Count |
---|---|
lineage4.2.1 | 2 |
lineage1.1 | 1 |
lineage5.2 | 2 |
lineage4.3.4.2.1 | 4 |
lineage4.6.2.2 | 3 |
lineage2.2 | 6 |
150 | |
lineage2.2.1 | 21 |
lineage4.6 | 1 |
lineage4.1.2.1 | 21 |
lineage4.9 | 22 |
lineage4.1.1.3 | 5 |
lineage4.8 | 7 |
La1 | 2 |
lineage4 | 13 |
La1.8.1 | 4 |
lineage6.3.1 | 3 |
lineage4.1.3 | 2 |
lineage2 | 3 |
lineage1.2.2.2 | 1 |
lineage3 | 4 |
lineage4.8;La3 | 2 |
lineage4.3.4 | 1 |
lineage1.1.3.2 | 1 |
lineage1.1.2 | 2 |
lineage4.3.2.1 | 1 |
lineage4.3.2 | 1 |
lineage4.1 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage4.7 | 2 |
lineage4.1.1 | 2 |
lineage6 | 1 |
lineage4.4.1.1 | 2 |
lineage4.3.3 | 4 |
lineage3.1 | 2 |
lineage1.2.1.2 | 1 |
lineage4.3.4.1 | 1 |
lineage2.1 | 2 |
lineage4.5 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage2.2.1;La3 | 1 |
lineage4.9;La3 | 1 |
lineage4.2;La1.7 | 1 |
lineage4.1.1.1 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.6;lineage2.2.1 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.6;lineage3 | 1 |
lineage4.2.2.2 | 1 |
lineage4;lineage1.1 | 1 |
spoligotype | Count |
---|---|
None | 319 |
ID | Drug resistance | Lineage | Country iso2 | SRR6785262 | Sensitive | lineage4.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | SRR6785268 | Sensitive | lineage4.2.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR6832249 | Other | lineage2.2.1 | None | SRR6789626 | Other | None | ERR502532 | HR-TB | None | ERR2510595 | Pre-XDR-TB | lineage4.6 | pk | ERR502889 | Other | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | SRR7496509 | Other | None | ERR323043 | HR-TB | None | ERR323045 | HR-TB | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR067681 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR1063857 | HR-TB | None | ERR1063859 | HR-TB | None | ERR323041 | HR-TB | None | ERR3283025 | HR-TB | None | ERR133986 | HR-TB | None | ERR12015084 | Other | lineage4.8 | None | ERR3283010 | Other | La1 | None | ERR3283043 | Other | lineage4.9 | None | ERR3283024 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3439432 | Other | None | ERR3797016 | HR-TB | None | ERR3797024 | Other | lineage4.9 | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3468544 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR387051 | HR-TB | None | ERR3797044 | Other | None | ERR3797060 | Other | La1.8.1 | None | ERR3797082 | Other | lineage4.9 | None | ERR3804162 | Sensitive | lineage6.3.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797061 | Other | None | ERR3797069 | Other | None | ERR3797083 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR403298 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4769521 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798406 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR12015085 | Other | lineage4.8 | None | ERR4810741 | HR-TB | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR702406 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR6359045 | HR-TB | None | ERR736835 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736875 | HR-TB | lineage4 | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR736874 | HR-TB | None | ERR7821193 | Other | lineage2.2.1 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9117709 | HR-TB | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR8976043 | HR-TB | None | ERR9119669 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786507 | Sensitive | lineage4.7 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786671 | Other | None | ERR9786604 | Other | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9896144 | Other | lineage3 | None | ERR9787197 | Other | None | ERR9787223 | Sensitive | lineage6.3.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | ERR990545 | Other | lineage3 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172234 | Other | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1173118 | Other | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173166 | Other | lineage4.9 | None | SRR1173363 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173400 | Other | None | SRR1175074 | MDR-TB | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184294 | HR-TB | None | SRR1183049 | Other | lineage2.2 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184388 | Other | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196768 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416824 | HR-TB | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR13837860 | Sensitive | lineage4.9 | None | SRR13837702 | Sensitive | lineage4.9 | None | SRR15368973 | Other | None | ERR11081258 | Other | lineage4.8 | None | SRR1640750 | HR-TB | None | SRR1710057 | Other | lineage2.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827682 | Other | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19303884 | HR-TB | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR11081257 | Other | lineage4.8 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR26159043 | Other | lineage4.9 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | ERR4815604 | HR-TB | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR176793 | Other | lineage4.1.1 | None | SRR6325445 | HR-TB | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR1035239 | HR-TB | None | ERR158583 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR161033 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | SRR3675486 | HR-TB | None | SRR3675502 | Other | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR181824 | HR-TB | lineage4 | None | ERR2510597 | MDR-TB | lineage4.6;lineage2.2.1 | pk | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675311 | Other | None | ERR176651 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | ERR181887 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR2027263 | Other | lineage4 | None | SRR3675456 | HR-TB | None | ERR4816999 | Other | None | SRR3675510 | Other | None | SRR3675545 | HR-TB | None | SRR3675574 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675572 | Other | None | ERR212125 | HR-TB | lineage4 | None | SRR3675550 | Other | None | SRR3675555 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3742665 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4816656 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816585 | Other | lineage2.2 | None | ERR2510598 | Pre-XDR-TB | lineage4.6;lineage3 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4818929 | HR-TB | None | SRR7496472 | Other | None | ERR1035162 | Other | None | ERR234659 | HR-TB | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4818021 | Other | La1.8.1 | None | ERR4818394 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR4818615 | Other | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341418 | Other | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341333 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | ERR4821053 | Other | lineage3 | None | ERR2693231 | Other | None | ERR2693239 | HR-TB | None | SRR6045555 | HR-TB | None | ERR2693254 | Other | None | ERR278594 | HR-TB | None | ERR2693230 | Other | None | ERR2693257 | Other | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6325444 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None |
---|