TB-Profiler result

Run: SRR6832249
Summary

Run ID: SRR6832249

Sample name:

Date: 04-04-2023 17:19:09

Number of reads: 1959954

Percentage reads mapped: 80.62

Strain: lineage2.2.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 0.98
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 0.97
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
embB 4247448 p.His312Arg missense_variant 0.2 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5287 c.48T>C synonymous_variant 0.15
gyrB 5293 c.54C>G synonymous_variant 0.17
gyrB 5302 c.63A>G synonymous_variant 0.17
gyrB 5305 c.66G>A synonymous_variant 0.16
gyrB 5308 c.69G>A synonymous_variant 0.15
gyrB 5341 c.102T>C synonymous_variant 0.15
gyrB 5527 c.288C>G synonymous_variant 0.15
gyrA 7090 c.-212C>T upstream_gene_variant 0.16
gyrA 7093 c.-209T>C upstream_gene_variant 0.15
gyrA 7099 c.-203G>A upstream_gene_variant 0.15
gyrA 7108 c.-194G>A upstream_gene_variant 0.15
gyrA 7120 c.-182T>C upstream_gene_variant 0.17
gyrA 7123 c.-179C>G upstream_gene_variant 0.14
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 0.14
gyrA 7766 c.465C>T synonymous_variant 0.19
gyrA 7769 c.468C>T synonymous_variant 0.18
gyrA 7784 c.483A>G synonymous_variant 0.17
gyrA 7787 c.486G>A synonymous_variant 0.17
gyrA 7799 c.498A>G synonymous_variant 0.18
gyrA 7832 c.531G>T synonymous_variant 0.17
gyrA 7835 c.534A>C synonymous_variant 0.17
gyrA 7838 c.537C>T synonymous_variant 0.17
gyrA 7850 c.549C>G synonymous_variant 0.14
gyrA 7859 c.558A>C synonymous_variant 0.14
gyrA 7892 c.591G>C synonymous_variant 0.16
gyrA 8315 c.1014G>A synonymous_variant 0.15
gyrA 8318 c.1017C>G synonymous_variant 0.17
gyrA 8324 c.1023T>C synonymous_variant 0.2
gyrA 8339 c.1038A>G synonymous_variant 0.17
gyrA 8340 p.Ala347Ser missense_variant 0.17
gyrA 8375 c.1074G>C synonymous_variant 0.16
gyrA 8399 c.1098T>C synonymous_variant 0.14
gyrA 8433 p.Thr378Arg missense_variant 0.14
gyrA 8447 c.1146C>A synonymous_variant 0.14
gyrA 8450 c.1149G>A synonymous_variant 0.14
gyrA 8453 c.1152A>C synonymous_variant 0.14
gyrA 8519 c.1218A>C synonymous_variant 0.14
gyrA 8561 c.1260A>G synonymous_variant 0.17
gyrA 8571 c.1270C>T synonymous_variant 0.17
gyrA 8603 c.1302A>G synonymous_variant 0.19
gyrA 8609 c.1308G>C synonymous_variant 0.18
gyrA 8619 c.1318T>C synonymous_variant 0.2
gyrA 8627 c.1326C>T synonymous_variant 0.2
gyrA 8633 c.1332C>G synonymous_variant 0.2
gyrA 8645 c.1344C>T synonymous_variant 0.2
gyrA 8655 p.Ile452Val missense_variant 0.21
gyrA 8666 c.1365G>C synonymous_variant 0.19
gyrA 8693 c.1392T>C synonymous_variant 0.16
gyrA 8711 c.1410A>C synonymous_variant 0.22
gyrA 8723 c.1422G>A synonymous_variant 0.17
gyrA 8981 c.1680G>C synonymous_variant 0.15
gyrA 8998 p.Leu566Trp missense_variant 0.15
gyrA 9003 c.1702C>T synonymous_variant 0.16
gyrA 9017 c.1716C>T synonymous_variant 0.15
gyrA 9023 c.1722A>C synonymous_variant 0.13
gyrA 9029 c.1728T>G synonymous_variant 0.15
gyrA 9050 p.Asp583Glu missense_variant 0.16
gyrA 9296 c.1995T>C synonymous_variant 0.15
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9476 c.2175G>C synonymous_variant 0.15
gyrA 9479 c.2178G>T synonymous_variant 0.16
gyrA 9485 c.2184A>C synonymous_variant 0.15
gyrA 9488 c.2187G>C synonymous_variant 0.14
gyrA 9494 c.2193T>C synonymous_variant 0.14
gyrA 9497 c.2196G>C synonymous_variant 0.14
gyrA 9503 c.2202T>C synonymous_variant 0.15
gyrA 9518 c.2217A>G synonymous_variant 0.15
gyrA 9527 c.2226A>G synonymous_variant 0.13
fgd1 490863 c.81C>A synonymous_variant 0.14
fgd1 490869 c.87C>T synonymous_variant 0.16
fgd1 490890 c.108C>G synonymous_variant 0.18
fgd1 490896 c.114C>T synonymous_variant 0.17
fgd1 490905 c.123T>C synonymous_variant 0.17
fgd1 490911 c.129T>C synonymous_variant 0.17
fgd1 490921 p.Gln47Lys missense_variant 0.14
fgd1 490929 c.147C>G synonymous_variant 0.15
fgd1 490932 c.150T>C synonymous_variant 0.16
fgd1 490935 c.153C>G synonymous_variant 0.16
fgd1 490945 c.163C>T synonymous_variant 0.16
fgd1 491007 c.225G>C synonymous_variant 0.16
fgd1 491013 c.231C>G synonymous_variant 0.16
fgd1 491043 c.261T>G synonymous_variant 0.21
fgd1 491049 c.267T>G synonymous_variant 0.24
fgd1 491063 p.Gly94Ala missense_variant 0.22
fgd1 491067 c.285C>T synonymous_variant 0.23
fgd1 491077 p.Asn99Asp missense_variant 0.26
fgd1 491085 c.303T>G synonymous_variant 0.25
fgd1 491091 c.309T>G synonymous_variant 0.24
fgd1 491094 c.312C>T synonymous_variant 0.24
fgd1 491106 c.324T>C synonymous_variant 0.3
fgd1 491121 c.339A>G synonymous_variant 0.27
fgd1 491142 c.360C>G synonymous_variant 0.23
fgd1 491151 c.369G>A synonymous_variant 0.18
fgd1 491154 p.Glu124Asp missense_variant 0.17
fgd1 491163 c.381G>A synonymous_variant 0.15
fgd1 491166 c.384G>C synonymous_variant 0.15
fgd1 491181 c.399T>C synonymous_variant 0.18
fgd1 491191 p.Gly137Arg missense_variant 0.17
fgd1 491203 p.Gln141Glu missense_variant 0.13
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575629 c.282A>T synonymous_variant 0.14
mshA 575633 p.Ala96Thr missense_variant 0.15
mshA 575652 p.Arg102Gln missense_variant 0.16
mshA 575659 c.312A>G synonymous_variant 0.16
mshA 575662 c.315C>A synonymous_variant 0.17
mshA 575665 c.318G>C synonymous_variant 0.16
mshA 575686 c.339G>A synonymous_variant 0.17
mshA 575689 c.342G>C synonymous_variant 0.19
mshA 575692 c.345G>A synonymous_variant 0.17
mshA 575705 c.358T>C synonymous_variant 0.18
mshA 575713 c.366G>A synonymous_variant 0.17
mshA 575785 c.438T>C synonymous_variant 0.17
mshA 575907 p.Ala187Val missense_variant 0.98
ccsA 620415 c.525T>C synonymous_variant 0.14
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 759635 c.-172C>T upstream_gene_variant 0.19
rpoB 759644 c.-163T>A upstream_gene_variant 0.19
rpoB 759647 c.-160T>C upstream_gene_variant 0.2
rpoB 759661 c.-146G>C upstream_gene_variant 0.15
rpoB 759671 c.-136G>T upstream_gene_variant 0.14
rpoB 760059 p.Tyr85Asp missense_variant 0.14
rpoB 760067 c.261G>C synonymous_variant 0.15
rpoB 760070 c.264T>A synonymous_variant 0.15
rpoB 760101 c.295T>C synonymous_variant 0.15
rpoB 760106 c.300G>C synonymous_variant 0.16
rpoB 760112 c.306T>C synonymous_variant 0.16
rpoB 760118 c.312T>C synonymous_variant 0.16
rpoB 760121 c.315T>C synonymous_variant 0.16
rpoB 760130 p.Asp108Glu missense_variant 0.19
rpoB 760142 c.336C>G synonymous_variant 0.18
rpoB 760298 c.492G>C synonymous_variant 0.17
rpoB 760307 c.501T>C synonymous_variant 0.17
rpoB 760328 c.522G>C synonymous_variant 0.18
rpoB 760340 c.534G>T synonymous_variant 0.16
rpoB 760830 c.1024T>C synonymous_variant 0.14
rpoB 760841 c.1035T>C synonymous_variant 0.19
rpoB 760845 p.Thr347Ala missense_variant 0.18
rpoB 760859 c.1053T>G synonymous_variant 0.18
rpoB 760868 c.1062C>G synonymous_variant 0.17
rpoB 760919 c.1113C>G synonymous_variant 0.15
rpoB 760920 c.1114C>T synonymous_variant 0.16
rpoB 760971 c.1165C>A synonymous_variant 0.14
rpoB 760994 c.1188G>A synonymous_variant 0.23
rpoB 761006 c.1200C>T synonymous_variant 0.29
rpoB 761015 c.1209G>C synonymous_variant 0.3
rpoB 761027 c.1221A>G synonymous_variant 0.33
rpoB 761036 c.1230G>A synonymous_variant 0.31
rpoB 761037 c.1231T>C synonymous_variant 0.31
rpoB 761051 c.1245G>C synonymous_variant 0.29
rpoB 761066 c.1260G>C synonymous_variant 0.28
rpoB 761204 c.1398C>G synonymous_variant 0.14
rpoB 761207 c.1401C>T synonymous_variant 0.16
rpoB 761234 c.1428G>C synonymous_variant 0.32
rpoB 761249 c.1443A>G synonymous_variant 0.29
rpoB 761255 c.1449T>G synonymous_variant 0.3
rpoB 761261 c.1455G>T synonymous_variant 0.31
rpoB 761273 c.1467T>C synonymous_variant 0.24
rpoB 761300 c.1494G>A synonymous_variant 0.23
rpoB 761537 c.1731C>G synonymous_variant 0.17
rpoB 761561 c.1755C>G synonymous_variant 0.18
rpoB 761564 c.1758G>C synonymous_variant 0.16
rpoB 761573 c.1767C>G synonymous_variant 0.16
rpoB 761579 c.1773G>C synonymous_variant 0.15
rpoB 761600 c.1794T>G synonymous_variant 0.14
rpoB 761603 c.1797C>T synonymous_variant 0.13
rpoB 761606 c.1800C>G synonymous_variant 0.14
rpoB 761612 c.1806G>T synonymous_variant 0.16
rpoB 761615 c.1809A>C synonymous_variant 0.16
rpoB 761954 c.2148C>G synonymous_variant 0.13
rpoB 762008 c.2202C>G synonymous_variant 0.16
rpoB 762011 c.2205G>C synonymous_variant 0.16
rpoB 762017 c.2211A>G synonymous_variant 0.16
rpoB 762020 c.2214G>A synonymous_variant 0.15
rpoB 762024 p.Val740Ile missense_variant 0.15
rpoB 762053 c.2247T>C synonymous_variant 0.17
rpoB 762062 c.2256T>C synonymous_variant 0.15
rpoB 762065 c.2259T>C synonymous_variant 0.14
rpoB 762218 c.2412T>G synonymous_variant 0.16
rpoB 762224 c.2418C>G synonymous_variant 0.18
rpoC 762899 c.-471G>C upstream_gene_variant 0.19
rpoC 762929 c.-441G>C upstream_gene_variant 0.17
rpoC 763028 c.-342T>C upstream_gene_variant 0.18
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.17
rpoC 763040 c.-330C>G upstream_gene_variant 0.18
rpoC 763050 c.-320C>T upstream_gene_variant 0.2
rpoC 763070 c.-300T>C upstream_gene_variant 0.18
rpoC 763076 c.-294C>T upstream_gene_variant 0.18
rpoC 763085 c.-285C>G upstream_gene_variant 0.18
rpoC 763094 c.-276G>C upstream_gene_variant 0.19
rpoC 763115 c.-255T>C upstream_gene_variant 0.14
rpoC 763124 c.-246C>T upstream_gene_variant 0.14
rpoC 763127 c.-243G>C upstream_gene_variant 0.14
rpoC 763169 c.-201A>G upstream_gene_variant 0.19
rpoC 763193 c.-177C>G upstream_gene_variant 0.19
rpoC 763430 c.61A>C synonymous_variant 0.18
rpoC 763435 c.66A>G synonymous_variant 0.2
rpoC 763444 c.75T>C synonymous_variant 0.22
rpoC 763456 c.87A>G synonymous_variant 0.21
rpoC 763468 c.99G>C synonymous_variant 0.23
rpoC 763486 c.117T>C synonymous_variant 0.3
rpoC 763505 c.136C>T synonymous_variant 0.31
rpoC 763561 c.192G>A synonymous_variant 0.26
rpoC 763600 c.231C>T synonymous_variant 0.23
rpoC 763606 c.237C>T synonymous_variant 0.23
rpoC 763618 c.249C>A synonymous_variant 0.19
rpoC 763658 c.289_291delCTTinsTTG synonymous_variant 0.16
rpoC 763666 c.297G>A synonymous_variant 0.22
rpoC 763696 c.327T>C synonymous_variant 0.14
rpoC 763699 c.330G>C synonymous_variant 0.14
rpoC 763702 c.333C>G synonymous_variant 0.14
rpoC 763714 c.345G>C synonymous_variant 0.14
rpoC 763717 c.348T>C synonymous_variant 0.17
rpoC 763732 c.363C>G synonymous_variant 0.15
rpoC 763735 c.366G>C synonymous_variant 0.15
rpoC 763744 c.375G>C synonymous_variant 0.16
rpoC 764266 c.897T>C synonymous_variant 0.14
rpoC 764269 c.900G>C synonymous_variant 0.14
rpoC 764272 c.903G>T synonymous_variant 0.15
rpoC 764278 c.909A>G synonymous_variant 0.15
rpoC 764284 c.915G>C synonymous_variant 0.15
rpoC 764317 c.948C>T synonymous_variant 0.2
rpoC 764344 c.975C>T synonymous_variant 0.24
rpoC 764347 c.978G>C synonymous_variant 0.24
rpoC 764365 c.996C>T synonymous_variant 0.2
rpoC 764380 c.1011G>C synonymous_variant 0.18
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 0.18
rpoC 764387 c.1018T>C synonymous_variant 0.17
rpoC 764497 c.1128A>G synonymous_variant 0.16
rpoC 764500 c.1131C>G synonymous_variant 0.17
rpoC 764503 c.1134G>C synonymous_variant 0.18
rpoC 764527 c.1158C>T synonymous_variant 0.13
rpoC 764533 c.1164C>T synonymous_variant 0.14
rpoC 764536 c.1167G>A synonymous_variant 0.14
rpoC 764539 c.1170C>G synonymous_variant 0.18
rpoC 764575 c.1206T>G synonymous_variant 0.17
rpoC 764576 c.1207_1208delTCinsAG synonymous_variant 0.17
rpoC 764587 c.1218C>G synonymous_variant 0.15
rpoC 764746 c.1377G>T synonymous_variant 0.14
rpoC 764755 c.1386C>T synonymous_variant 0.14
rpoC 764764 c.1395T>C synonymous_variant 0.14
rpoC 764809 c.1440C>T synonymous_variant 0.13
rpoC 764815 c.1446A>G synonymous_variant 0.14
rpoC 764902 c.1533C>G synonymous_variant 0.16
rpoC 765383 p.Met672Leu missense_variant 0.16
rpoC 765395 c.2026C>T synonymous_variant 0.14
rpoC 765405 p.Leu679Pro missense_variant 0.15
rpoC 765409 c.2040T>C synonymous_variant 0.15
rpoC 765430 c.2061G>A synonymous_variant 0.15
rpoC 765445 c.2076G>T synonymous_variant 0.21
rpoC 765451 c.2082C>G synonymous_variant 0.17
rpoC 765452 p.Ala695Ser missense_variant 0.16
rpoC 765478 c.2109T>C synonymous_variant 0.26
rpoC 765496 c.2127C>G synonymous_variant 0.31
rpoC 765499 c.2130C>G synonymous_variant 0.29
rpoC 765526 c.2157C>G synonymous_variant 0.27
rpoC 765541 c.2172C>A synonymous_variant 0.24
rpoC 765547 c.2178C>A synonymous_variant 0.23
rpoC 765553 c.2184C>T synonymous_variant 0.28
rpoC 765556 c.2187G>C synonymous_variant 0.28
rpoC 765562 c.2193G>C synonymous_variant 0.28
rpoC 765583 c.2214G>T synonymous_variant 0.23
rpoC 765586 c.2217G>A synonymous_variant 0.22
rpoC 765589 c.2220G>C synonymous_variant 0.26
rpoC 765610 c.2241C>T synonymous_variant 0.24
rpoC 765612 p.His748Arg missense_variant 0.19
rpoC 765622 p.Glu751Asp missense_variant 0.23
rpoC 765628 c.2259G>C synonymous_variant 0.2
rpoC 765724 c.2355C>G synonymous_variant 0.14
rpoC 765727 c.2358T>C synonymous_variant 0.14
rpoC 765734 c.2365T>C synonymous_variant 0.18
rpoC 765752 p.Asp795Ser missense_variant 0.15
rpoC 765757 c.2388C>T synonymous_variant 0.15
rpoC 765784 c.2415C>G synonymous_variant 0.16
rpoC 765787 c.2418C>T synonymous_variant 0.15
rpoC 765790 c.2421C>T synonymous_variant 0.15
rpoC 765793 c.2424C>G synonymous_variant 0.15
rpoC 765796 c.2427C>T synonymous_variant 0.16
rpoC 765811 c.2442T>C synonymous_variant 0.17
rpoC 765814 c.2445A>G synonymous_variant 0.17
rpoC 765826 c.2457T>A synonymous_variant 0.14
rpoC 765850 c.2481G>C synonymous_variant 0.16
rpoC 765883 c.2514C>G synonymous_variant 0.14
rpoC 765886 c.2517C>G synonymous_variant 0.14
rpoC 765892 c.2523T>C synonymous_variant 0.14
rpoC 765910 c.2541G>C synonymous_variant 0.15
rpoC 765934 c.2565C>T synonymous_variant 0.19
rpoC 765952 c.2583G>C synonymous_variant 0.17
rpoC 765967 c.2598C>T synonymous_variant 0.18
rpoC 765979 c.2610C>G synonymous_variant 0.18
rpoC 765994 c.2625A>T synonymous_variant 0.17
rpoC 765997 c.2628T>C synonymous_variant 0.16
rpoC 766315 c.2946C>G synonymous_variant 0.14
rpoC 766324 c.2955C>T synonymous_variant 0.2
rpoC 766351 c.2982C>G synonymous_variant 0.26
rpoC 766360 c.2991C>T synonymous_variant 0.26
rpoC 766381 c.3012C>T synonymous_variant 0.2
rpoC 766384 c.3015A>G synonymous_variant 0.2
rpoC 766387 c.3018C>G synonymous_variant 0.2
rpoC 766393 c.3024C>G synonymous_variant 0.21
rpoC 766397 c.3028C>T synonymous_variant 0.21
rpoC 766408 c.3039C>T synonymous_variant 0.23
rpoC 766417 c.3048C>T synonymous_variant 0.19
rpoC 766426 c.3057C>T synonymous_variant 0.17
rpoC 766519 c.3150C>A synonymous_variant 0.15
rpoC 766528 c.3159T>C synonymous_variant 0.14
rpoC 766534 c.3165C>G synonymous_variant 0.14
rpoC 766537 c.3168G>A synonymous_variant 0.15
rpoC 766543 c.3174C>T synonymous_variant 0.15
rpoC 766570 c.3201T>G synonymous_variant 0.15
rpoC 766573 c.3204T>C synonymous_variant 0.15
rpoC 766583 p.Gly1072Ser missense_variant 0.2
rpoC 766591 c.3222A>G synonymous_variant 0.2
rpoC 766594 c.3225G>C synonymous_variant 0.18
rpoC 766597 c.3228C>G synonymous_variant 0.21
rpoC 766607 p.Ile1080Leu missense_variant 0.23
rpoC 766621 c.3252G>A synonymous_variant 0.17
rpoC 766645 p.Glu1092Asp missense_variant 1.0
rpoC 766651 c.3282T>C synonymous_variant 0.18
rpoC 766654 c.3285C>G synonymous_variant 0.17
rpoC 766657 c.3288A>G synonymous_variant 0.16
rpoC 766672 c.3303T>C synonymous_variant 0.15
rpoC 766700 c.3331C>T synonymous_variant 0.17
rpoC 766714 c.3345G>C synonymous_variant 0.21
rpoC 766726 c.3357T>C synonymous_variant 0.16
rpoC 766747 c.3378C>T synonymous_variant 0.18
rpoC 766765 c.3396A>C synonymous_variant 0.14
rpoC 766774 c.3405T>C synonymous_variant 0.19
rpoC 766792 c.3423C>G synonymous_variant 0.19
rpoC 766795 c.3426C>T synonymous_variant 0.19
rpoC 766801 c.3432C>T synonymous_variant 0.17
rpoC 766843 c.3474T>G synonymous_variant 0.21
rpoC 766864 c.3495G>C synonymous_variant 0.26
rpoC 766894 c.3525T>C synonymous_variant 0.22
rpoC 766895 c.3526T>C synonymous_variant 0.22
rpoC 766900 c.3531T>C synonymous_variant 0.24
rpoC 766903 c.3534C>T synonymous_variant 0.24
rpoC 766907 c.3538C>T synonymous_variant 0.26
rpoC 766918 c.3549C>T synonymous_variant 0.27
rpoC 766921 c.3552G>C synonymous_variant 0.28
rpoC 766933 c.3564A>G synonymous_variant 0.31
rpoC 766945 c.3576A>G synonymous_variant 0.29
rpoC 766963 c.3594T>C synonymous_variant 0.31
rpoC 766972 c.3603G>C synonymous_variant 0.32
rpoC 766975 c.3606C>T synonymous_variant 0.32
rpoC 766996 c.3627C>T synonymous_variant 0.4
rpoC 767002 c.3633G>C synonymous_variant 0.42
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.4
rpoC 767059 c.3690T>G synonymous_variant 0.24
rpoC 767062 c.3693C>A synonymous_variant 0.21
rpoC 767098 c.3729T>C synonymous_variant 0.23
rpoC 767119 c.3750A>G synonymous_variant 0.19
rpoC 767167 c.3798C>T synonymous_variant 0.16
rpoC 767206 c.3837C>A synonymous_variant 0.14
rpoC 767209 c.3840T>G synonymous_variant 0.16
rpoC 767212 c.3843G>C synonymous_variant 0.15
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781709 c.150G>C synonymous_variant 0.13
rpsL 781742 c.183C>T synonymous_variant 0.15
rpsL 781760 c.201T>C synonymous_variant 0.15
rpsL 781892 c.333A>G synonymous_variant 0.14
rpsL 781898 c.339A>T synonymous_variant 0.14
rpsL 781929 p.Gly124Ser missense_variant 0.16
rplC 800618 c.-191T>C upstream_gene_variant 0.15
rplC 800648 c.-161A>C upstream_gene_variant 0.14
rplC 800693 c.-116A>C upstream_gene_variant 0.14
rplC 800714 c.-95C>T upstream_gene_variant 0.16
rplC 800715 c.-94A>C upstream_gene_variant 0.16
rplC 800720 c.-89T>C upstream_gene_variant 0.16
rplC 800723 c.-86C>G upstream_gene_variant 0.16
rplC 800759 c.-50C>T upstream_gene_variant 0.13
rplC 800771 c.-38C>T upstream_gene_variant 0.15
rplC 800844 c.36T>C synonymous_variant 0.17
rplC 800865 c.57A>G synonymous_variant 0.23
rplC 800867 p.Ser20Asn missense_variant 0.24
rplC 800877 c.69A>C synonymous_variant 0.24
rplC 800907 c.99C>G synonymous_variant 0.26
rplC 800913 c.105G>C synonymous_variant 0.25
rplC 800916 c.108A>T synonymous_variant 0.22
rplC 800922 c.114C>G synonymous_variant 0.2
rplC 800934 c.126C>G synonymous_variant 0.24
rplC 800937 c.129A>G synonymous_variant 0.24
rplC 800946 c.138T>G synonymous_variant 0.21
rplC 800949 c.141T>C synonymous_variant 0.2
rplC 800955 c.147C>G synonymous_variant 0.18
rplC 800958 c.150G>A synonymous_variant 0.18
fbiC 1303503 c.573G>C synonymous_variant 0.22
fbiC 1303509 c.579G>C synonymous_variant 0.19
fbiC 1303512 c.582T>G synonymous_variant 0.2
fbiC 1303545 c.615A>G synonymous_variant 0.22
fbiC 1303551 c.621G>C synonymous_variant 0.24
fbiC 1303578 c.648G>A synonymous_variant 0.21
fbiC 1303584 c.654C>A synonymous_variant 0.23
fbiC 1303590 c.660A>G synonymous_variant 0.16
fbiC 1303591 c.661C>A synonymous_variant 0.16
fbiC 1303594 c.664C>T synonymous_variant 0.16
fbiC 1303614 c.684C>G synonymous_variant 0.13
fbiC 1304031 c.1101C>G synonymous_variant 0.14
fbiC 1304049 c.1119T>G synonymous_variant 0.14
fbiC 1304074 p.Ala382Ser missense_variant 0.14
fbiC 1304079 c.1149A>G synonymous_variant 0.15
fbiC 1304091 c.1161C>T synonymous_variant 0.17
fbiC 1304092 p.Met388Leu missense_variant 0.17
fbiC 1304112 c.1182G>A synonymous_variant 0.23
fbiC 1304127 c.1197A>G synonymous_variant 0.14
fbiC 1304142 c.1212G>C synonymous_variant 0.21
fbiC 1304163 c.1233G>C synonymous_variant 0.19
fbiC 1304164 p.Gly412Arg missense_variant 0.19
fbiC 1304172 c.1242G>T synonymous_variant 0.19
fbiC 1304174 p.Val415Ala missense_variant 0.19
fbiC 1304178 c.1248G>C synonymous_variant 0.18
fbiC 1304181 c.1251G>T synonymous_variant 0.18
fbiC 1304184 c.1254G>C synonymous_variant 0.19
fbiC 1304200 p.Leu424Phe missense_variant 0.18
fbiC 1304205 c.1275C>G synonymous_variant 0.19
fbiC 1304208 c.1278C>T synonymous_variant 0.19
fbiC 1304217 p.Asn429Lys missense_variant 0.15
fbiC 1304511 c.1581C>T synonymous_variant 0.2
fbiC 1304523 c.1593G>A synonymous_variant 0.14
fbiC 1304526 c.1596T>G synonymous_variant 0.14
fbiC 1304546 p.Val539Ala missense_variant 0.19
fbiC 1304556 c.1626C>T synonymous_variant 0.35
fbiC 1304559 p.Glu543Asp missense_variant 0.33
fbiC 1304565 c.1635C>G synonymous_variant 0.3
fbiC 1304580 c.1650T>C synonymous_variant 0.3
fbiC 1304598 c.1668C>T synonymous_variant 0.35
fbiC 1304613 c.1683T>C synonymous_variant 0.3
fbiC 1304625 c.1695C>T synonymous_variant 0.31
fbiC 1304628 c.1698G>C synonymous_variant 0.29
fbiC 1304649 c.1719C>T synonymous_variant 0.21
fbiC 1304658 c.1728C>G synonymous_variant 0.15
fbiC 1304661 c.1731C>T synonymous_variant 0.15
fbiC 1304675 p.Gly582Asp missense_variant 0.18
fbiC 1304679 c.1749G>A synonymous_variant 0.19
fbiC 1304715 c.1785G>T synonymous_variant 0.17
fbiC 1304724 c.1794A>G synonymous_variant 0.14
fbiC 1304727 c.1797A>G synonymous_variant 0.15
fbiC 1304742 c.1812T>C synonymous_variant 0.16
fbiC 1304751 c.1821C>G synonymous_variant 0.21
fbiC 1304757 c.1827A>G synonymous_variant 0.17
fbiC 1304784 c.1854T>G synonymous_variant 0.24
fbiC 1304787 c.1857T>C synonymous_variant 0.25
fbiC 1304790 c.1860C>A synonymous_variant 0.24
fbiC 1304799 c.1869G>C synonymous_variant 0.24
fbiC 1304808 c.1878C>G synonymous_variant 0.19
fbiC 1304809 p.Ser627Glu missense_variant 0.19
fbiC 1304832 c.1902C>T synonymous_variant 0.17
fbiC 1304856 c.1926C>G synonymous_variant 0.16
fbiC 1305126 c.2196T>C synonymous_variant 0.14
Rv1258c 1406760 c.580_581insC frameshift_variant 0.98
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471935 n.90T>C non_coding_transcript_exon_variant 0.21
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.13
rrl 1473600 n.-58A>G upstream_gene_variant 0.15
rrl 1473603 n.-55C>T upstream_gene_variant 0.16
rrl 1473607 n.-50_-49delGG upstream_gene_variant 0.16
rrl 1473626 n.-32_-31insT upstream_gene_variant 0.15
rrl 1473648 n.-9_-7delTTG upstream_gene_variant 0.22
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.22
rrl 1473887 n.230T>A non_coding_transcript_exon_variant 0.15
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.15
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.18
rrl 1473986 n.329T>C non_coding_transcript_exon_variant 0.16
rrl 1474083 n.426C>T non_coding_transcript_exon_variant 0.2
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.16
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.19
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.17
rrl 1474201 n.544T>A non_coding_transcript_exon_variant 0.15
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.25
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.25
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.23
rrl 1474717 n.1060A>T non_coding_transcript_exon_variant 0.17
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 0.18
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.24
rrl 1475005 n.1348C>T non_coding_transcript_exon_variant 0.19
rrl 1475006 n.1349A>G non_coding_transcript_exon_variant 0.19
rrl 1475028 n.1371G>A non_coding_transcript_exon_variant 0.14
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.16
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.22
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.22
rrl 1475273 n.1616T>G non_coding_transcript_exon_variant 0.27
rrl 1475289 n.1632G>A non_coding_transcript_exon_variant 0.25
rrl 1475290 n.1633A>G non_coding_transcript_exon_variant 0.25
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.25
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.24
rrl 1475333 n.1676T>C non_coding_transcript_exon_variant 0.21
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.18
rrl 1475369 n.1712G>A non_coding_transcript_exon_variant 0.19
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.15
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.14
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.16
rrl 1476035 n.2378G>A non_coding_transcript_exon_variant 0.15
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.15
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.19
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.18
rrl 1476095 n.2438C>G non_coding_transcript_exon_variant 0.2
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.25
rrl 1476117 n.2460G>C non_coding_transcript_exon_variant 0.23
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.32
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.39
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.33
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.26
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.26
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.14
rrl 1476580 n.2923G>A non_coding_transcript_exon_variant 0.17
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.13
rrl 1476732 n.3075T>C non_coding_transcript_exon_variant 0.13
inhA 1673535 c.-667A>G upstream_gene_variant 0.18
inhA 1673547 c.-655T>C upstream_gene_variant 0.18
inhA 1673568 c.-634C>G upstream_gene_variant 0.21
inhA 1673574 c.-628C>G upstream_gene_variant 0.15
inhA 1673589 c.-613A>C upstream_gene_variant 0.13
fabG1 1673596 p.Lys53Glu missense_variant 0.13
inhA 1673736 c.-466G>A upstream_gene_variant 0.13
fabG1 1673767 p.Asn110Asp missense_variant 0.13
inhA 1673946 c.-256C>A upstream_gene_variant 0.17
inhA 1673955 c.-247G>C upstream_gene_variant 0.18
fabG1 1673960 p.Ala174Val missense_variant 0.17
inhA 1673970 c.-232C>G upstream_gene_variant 0.14
inhA 1673976 c.-226T>C upstream_gene_variant 0.14
inhA 1673982 c.-220G>C upstream_gene_variant 0.14
inhA 1673988 c.-214G>C upstream_gene_variant 0.14
inhA 1673991 c.-211C>G upstream_gene_variant 0.14
inhA 1674675 c.474C>T synonymous_variant 0.13
inhA 1674718 c.517A>C synonymous_variant 0.15
inhA 1674852 c.651G>A synonymous_variant 0.14
inhA 1674870 c.669T>C synonymous_variant 0.17
inhA 1674903 c.702T>C synonymous_variant 0.13
inhA 1674904 p.Ala235Pro missense_variant 0.13
inhA 1674912 c.711G>C synonymous_variant 0.17
rpsA 1833661 c.120A>G synonymous_variant 0.14
rpsA 1833664 c.123C>A synonymous_variant 0.14
rpsA 1833694 c.153G>T synonymous_variant 0.16
rpsA 1833718 c.177C>T synonymous_variant 0.17
rpsA 1833724 c.183C>G synonymous_variant 0.19
rpsA 1833727 c.186G>C synonymous_variant 0.16
rpsA 1833742 c.201A>G synonymous_variant 0.19
rpsA 1833745 c.204G>C synonymous_variant 0.19
rpsA 1833754 c.213G>A synonymous_variant 0.22
rpsA 1833802 c.261A>G synonymous_variant 0.22
rpsA 1833841 c.300C>G synonymous_variant 0.18
rpsA 1833847 c.306C>G synonymous_variant 0.17
rpsA 1833850 c.309C>G synonymous_variant 0.17
rpsA 1833856 c.315A>G synonymous_variant 0.19
rpsA 1833874 c.333T>C synonymous_variant 0.2
rpsA 1833928 c.387G>C synonymous_variant 0.22
rpsA 1833949 c.408T>C synonymous_variant 0.21
rpsA 1833979 c.438T>C synonymous_variant 0.16
rpsA 1834000 c.459G>C synonymous_variant 0.16
rpsA 1834015 c.474G>C synonymous_variant 0.2
rpsA 1834024 c.483G>A synonymous_variant 0.24
rpsA 1834030 c.489C>G synonymous_variant 0.24
rpsA 1834051 c.510G>A synonymous_variant 0.18
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 0.15
rpsA 1834264 c.723G>C synonymous_variant 0.15
rpsA 1834297 c.756C>T synonymous_variant 0.18
rpsA 1834303 c.762T>G synonymous_variant 0.18
rpsA 1834306 c.765T>C synonymous_variant 0.19
rpsA 1834336 c.795C>G synonymous_variant 0.18
rpsA 1834339 c.798C>T synonymous_variant 0.17
rpsA 1834348 c.807T>C synonymous_variant 0.18
rpsA 1834366 c.825A>G synonymous_variant 0.17
rpsA 1834369 c.828C>G synonymous_variant 0.17
rpsA 1834375 c.834G>A synonymous_variant 0.16
rpsA 1834396 c.855G>C synonymous_variant 0.19
rpsA 1834411 c.870T>C synonymous_variant 0.16
rpsA 1834417 c.876G>C synonymous_variant 0.17
rpsA 1834423 c.882G>C synonymous_variant 0.15
rpsA 1834451 c.910T>C synonymous_variant 0.15
rpsA 1834528 c.987T>C synonymous_variant 0.13
rpsA 1834609 c.1068T>C synonymous_variant 0.16
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2101912 c.1131G>C synonymous_variant 0.16
ndh 2101920 c.1123A>C synonymous_variant 0.2
ndh 2101924 c.1119T>G synonymous_variant 0.19
ndh 2101936 c.1107G>C synonymous_variant 0.18
ndh 2101939 c.1104A>G synonymous_variant 0.17
ndh 2101960 c.1083A>C synonymous_variant 0.14
ndh 2101963 c.1080G>A synonymous_variant 0.15
ndh 2102908 c.135C>T synonymous_variant 0.14
ndh 2102911 c.132G>C synonymous_variant 0.18
ndh 2102919 c.124C>T synonymous_variant 0.18
ndh 2102929 c.114T>C synonymous_variant 0.17
ndh 2102932 c.111C>T synonymous_variant 0.16
ndh 2102938 c.105G>T synonymous_variant 0.19
ndh 2102962 c.81A>C synonymous_variant 0.2
ndh 2102965 c.78G>C synonymous_variant 0.2
ndh 2102974 c.69G>A synonymous_variant 0.17
ndh 2102989 c.54G>C synonymous_variant 0.18
ndh 2102992 c.51T>C synonymous_variant 0.19
katG 2154724 p.Arg463Leu missense_variant 0.97
katG 2155632 c.480A>C synonymous_variant 0.16
katG 2155637 p.Leu159Ile missense_variant 0.16
katG 2155641 p.Lys157Asn missense_variant 0.22
katG 2155649 p.Tyr155His missense_variant 0.24
katG 2155680 c.432G>C synonymous_variant 0.18
katG 2155691 c.421T>C synonymous_variant 0.17
katG 2155704 c.408C>G synonymous_variant 0.16
katG 2155716 c.396T>C synonymous_variant 0.16
katG 2155722 c.390G>C synonymous_variant 0.15
PPE35 2167926 p.Leu896Ser missense_variant 0.96
PPE35 2169221 c.1392T>C synonymous_variant 1.0
PPE35 2170623 c.-11G>A upstream_gene_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517941 c.-174C>G upstream_gene_variant 0.23
kasA 2517956 c.-159G>A upstream_gene_variant 0.22
kasA 2517989 c.-126T>C upstream_gene_variant 0.2
kasA 2518681 c.567C>T synonymous_variant 0.13
kasA 2518684 c.570C>A synonymous_variant 0.13
kasA 2518711 c.597A>G synonymous_variant 0.25
kasA 2518714 c.600A>T synonymous_variant 0.22
kasA 2518735 c.621C>A synonymous_variant 0.21
kasA 2518744 c.630C>T synonymous_variant 0.18
kasA 2518747 c.633C>G synonymous_variant 0.15
kasA 2518756 c.642G>C synonymous_variant 0.14
kasA 2518783 c.669T>C synonymous_variant 0.16
kasA 2518789 c.675G>T synonymous_variant 0.15
kasA 2518798 c.684G>C synonymous_variant 0.15
kasA 2518816 c.702C>T synonymous_variant 0.18
kasA 2518822 c.708C>T synonymous_variant 0.18
kasA 2518825 c.711T>C synonymous_variant 0.18
kasA 2518855 c.741C>G synonymous_variant 0.15
kasA 2518856 p.Ile248Leu missense_variant 0.15
kasA 2518864 c.750G>C synonymous_variant 0.14
eis 2714955 c.378C>T synonymous_variant 1.0
eis 2715123 c.210G>T synonymous_variant 1.0
ahpC 2726348 c.156T>C synonymous_variant 0.15
folC 2746663 c.936T>C synonymous_variant 0.14
pepQ 2859438 c.981T>C synonymous_variant 0.14
pepQ 2859468 c.951G>T synonymous_variant 0.19
pepQ 2859489 p.Val310Ala missense_variant 0.22
pepQ 2859510 c.909T>C synonymous_variant 0.19
pepQ 2859528 c.891T>C synonymous_variant 0.18
pepQ 2859540 c.879A>T synonymous_variant 0.14
Rv2752c 3065556 c.636G>A synonymous_variant 0.22
Rv2752c 3065580 c.612G>C synonymous_variant 0.21
Rv2752c 3065583 c.609G>C synonymous_variant 0.22
Rv2752c 3065594 c.598C>T synonymous_variant 0.19
Rv2752c 3065595 p.Leu199Phe missense_variant 0.19
Rv2752c 3065612 p.Thr194Ala missense_variant 0.19
Rv2752c 3065625 c.567G>C synonymous_variant 0.19
Rv2752c 3065634 c.558G>C synonymous_variant 0.18
Rv2752c 3065637 c.555A>G synonymous_variant 0.16
Rv2752c 3065640 c.552T>C synonymous_variant 0.16
Rv2752c 3065652 c.540C>A synonymous_variant 0.14
Rv2752c 3065675 p.Phe173Leu missense_variant 0.13
thyX 3067295 c.651C>T synonymous_variant 0.13
thyX 3067304 c.642A>G synonymous_variant 0.14
thyX 3067316 c.630A>G synonymous_variant 0.27
thyX 3067325 c.621A>G synonymous_variant 0.23
thyX 3067331 c.615C>T synonymous_variant 0.21
thyX 3067355 c.591A>C synonymous_variant 0.16
thyX 3067373 c.573C>G synonymous_variant 0.23
thyX 3067391 c.555G>C synonymous_variant 0.19
thyX 3067394 c.552G>T synonymous_variant 0.19
thyX 3067406 c.540A>G synonymous_variant 0.2
thyX 3067445 c.501C>A synonymous_variant 0.17
thyX 3067451 c.495G>A synonymous_variant 0.14
thyX 3067457 c.489C>G synonymous_variant 0.13
thyX 3067781 c.165C>G synonymous_variant 0.16
thyX 3067784 c.162C>T synonymous_variant 0.16
thyX 3067787 p.Lys53Arg missense_variant 0.16
thyX 3067793 c.153T>C synonymous_variant 0.16
thyX 3067814 c.132T>C synonymous_variant 0.23
thyX 3067817 c.129C>T synonymous_variant 0.23
thyX 3067820 c.126C>G synonymous_variant 0.22
thyX 3067832 c.114C>T synonymous_variant 0.23
thyX 3067838 c.108C>G synonymous_variant 0.2
thyX 3067847 p.Pro33Ser missense_variant 0.17
thyX 3067850 c.96A>C synonymous_variant 0.14
thyA 3073947 c.525G>C synonymous_variant 0.17
thyA 3073953 c.519T>C synonymous_variant 0.15
thyA 3073977 c.495A>G synonymous_variant 0.17
thyA 3073989 c.483T>C synonymous_variant 0.23
thyA 3073997 c.475C>T synonymous_variant 0.23
thyA 3074004 c.468T>C synonymous_variant 0.2
thyA 3074031 c.441T>C synonymous_variant 0.26
thyA 3074037 c.435C>G synonymous_variant 0.22
thyA 3074045 c.427C>T synonymous_variant 0.22
thyA 3074053 p.Arg140Gln missense_variant 0.21
thyA 3074056 p.Glu139Pro missense_variant 0.23
thyA 3074061 p.Glu137Asp missense_variant 0.22
thyA 3074091 c.381C>G synonymous_variant 0.14
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 0.87
fbiA 3640562 p.Ala7Val missense_variant 0.2
fbiB 3640587 c.-948C>T upstream_gene_variant 0.14
fbiB 3640591 c.-944_-942delCTCinsTTG upstream_gene_variant 0.14
fbiB 3640606 c.-929C>T upstream_gene_variant 0.15
fbiB 3640620 c.-915C>A upstream_gene_variant 0.14
fbiB 3641948 c.414G>A synonymous_variant 0.15
rpoA 3877602 c.906C>T synonymous_variant 0.16
rpoA 3877613 p.Ile299Val missense_variant 0.14
rpoA 3877620 c.888G>A synonymous_variant 0.15
rpoA 3877704 c.804G>C synonymous_variant 0.14
rpoA 3877731 c.777G>T synonymous_variant 0.17
rpoA 3877734 c.774G>C synonymous_variant 0.2
rpoA 3877737 c.771G>T synonymous_variant 0.2
rpoA 3877743 c.765T>C synonymous_variant 0.18
rpoA 3877746 c.762G>C synonymous_variant 0.17
rpoA 3877752 c.756C>T synonymous_variant 0.16
rpoA 3877755 c.753C>A synonymous_variant 0.16
rpoA 3877764 c.744C>G synonymous_variant 0.16
rpoA 3877770 c.738A>G synonymous_variant 0.15
rpoA 3877776 c.732T>C synonymous_variant 0.21
rpoA 3877782 c.726T>C synonymous_variant 0.21
rpoA 3877836 c.672A>G synonymous_variant 0.15
rpoA 3877839 c.669G>C synonymous_variant 0.17
rpoA 3877848 c.660C>T synonymous_variant 0.15
rpoA 3877886 c.622C>T synonymous_variant 0.14
rpoA 3877950 c.558C>T synonymous_variant 0.18
rpoA 3877971 p.Asp179Glu missense_variant 0.2
rpoA 3877986 c.522G>C synonymous_variant 0.14
rpoA 3877989 c.519A>G synonymous_variant 0.17
rpoA 3878001 c.507A>G synonymous_variant 0.18
rpoA 3878022 c.486T>C synonymous_variant 0.15
rpoA 3878025 c.483C>T synonymous_variant 0.16
rpoA 3878028 c.480G>C synonymous_variant 0.16
rpoA 3878031 c.477T>C synonymous_variant 0.17
rpoA 3878043 c.465G>T synonymous_variant 0.21
rpoA 3878058 c.450G>C synonymous_variant 0.16
rpoA 3878061 c.447G>C synonymous_variant 0.19
rpoA 3878070 c.438T>C synonymous_variant 0.16
rpoA 3878256 c.252G>C synonymous_variant 0.15
rpoA 3878262 c.246C>T synonymous_variant 0.18
rpoA 3878271 c.237T>C synonymous_variant 0.2
rpoA 3878283 p.Glu75Asp missense_variant 0.15
rpoA 3878322 c.186A>G synonymous_variant 0.2
rpoA 3878331 c.177A>G synonymous_variant 0.17
rpoA 3878334 c.174T>C synonymous_variant 0.17
rpoA 3878337 c.171T>C synonymous_variant 0.18
rpoA 3878364 c.144A>T synonymous_variant 0.16
rpoA 3878367 c.141C>G synonymous_variant 0.16
rpoA 3878370 c.138T>C synonymous_variant 0.16
rpoA 3878376 c.132G>A synonymous_variant 0.16
rpoA 3878381 c.127C>T synonymous_variant 0.16
rpoA 3878391 c.117T>A synonymous_variant 0.15
rpoA 3878512 c.-6_-5insGAA upstream_gene_variant 0.22
ddn 3986954 c.111G>C synonymous_variant 0.13
ddn 3986957 c.114C>T synonymous_variant 0.14
clpC1 4038271 p.Pro812Ala missense_variant 0.17
clpC1 4038272 c.2433T>C synonymous_variant 0.17
clpC1 4038278 c.2427T>C synonymous_variant 0.17
clpC1 4038302 c.2403C>G synonymous_variant 0.17
clpC1 4038308 c.2397G>C synonymous_variant 0.15
clpC1 4038314 c.2391T>G synonymous_variant 0.18
clpC1 4038335 c.2370C>T synonymous_variant 0.17
clpC1 4038344 c.2361G>A synonymous_variant 0.2
clpC1 4038383 c.2322G>A synonymous_variant 0.17
clpC1 4038388 c.2317T>C synonymous_variant 0.17
clpC1 4038392 c.2313C>T synonymous_variant 0.17
clpC1 4038398 c.2307G>T synonymous_variant 0.16
clpC1 4038403 c.2302T>C synonymous_variant 0.15
clpC1 4038407 c.2298G>C synonymous_variant 0.17
clpC1 4038419 c.2286T>C synonymous_variant 0.14
clpC1 4038536 c.2169C>T synonymous_variant 0.13
clpC1 4038653 c.2052C>T synonymous_variant 0.14
clpC1 4038695 c.2010C>A synonymous_variant 0.14
clpC1 4038790 c.1915C>T synonymous_variant 0.21
clpC1 4038800 c.1905C>T synonymous_variant 0.26
clpC1 4038812 c.1893T>C synonymous_variant 0.27
clpC1 4038838 c.1867C>T synonymous_variant 0.34
clpC1 4038839 c.1866G>C synonymous_variant 0.33
clpC1 4038878 c.1827A>G synonymous_variant 0.31
clpC1 4038902 c.1803C>T synonymous_variant 0.19
clpC1 4038908 c.1797C>G synonymous_variant 0.16
clpC1 4038923 c.1782A>G synonymous_variant 0.24
clpC1 4038953 c.1752A>G synonymous_variant 0.21
clpC1 4038956 c.1749T>C synonymous_variant 0.21
clpC1 4038965 c.1740T>C synonymous_variant 0.2
clpC1 4038971 c.1734T>C synonymous_variant 0.19
clpC1 4038974 c.1731T>C synonymous_variant 0.21
clpC1 4038980 c.1725C>T synonymous_variant 0.2
clpC1 4038989 c.1716T>C synonymous_variant 0.19
clpC1 4038995 c.1710G>A synonymous_variant 0.19
clpC1 4039009 c.1696C>T synonymous_variant 0.17
clpC1 4039430 c.1275T>C synonymous_variant 0.15
clpC1 4039442 c.1261_1263delCTAinsTTG synonymous_variant 0.16
clpC1 4039448 c.1257A>G synonymous_variant 0.15
clpC1 4039454 c.1251A>G synonymous_variant 0.15
clpC1 4039601 c.1104G>C synonymous_variant 0.14
clpC1 4039610 c.1095G>C synonymous_variant 0.13
clpC1 4039616 c.1089G>C synonymous_variant 0.13
clpC1 4039831 c.874T>C synonymous_variant 0.15
clpC1 4039850 c.855T>C synonymous_variant 0.19
clpC1 4039865 c.840T>C synonymous_variant 0.14
clpC1 4039868 c.837C>T synonymous_variant 0.14
clpC1 4039991 c.714G>C synonymous_variant 0.14
clpC1 4039996 p.Glu237Gln missense_variant 0.18
clpC1 4040015 c.690G>C synonymous_variant 0.19
clpC1 4040018 c.687G>C synonymous_variant 0.24
clpC1 4040021 c.684A>C synonymous_variant 0.21
clpC1 4040033 c.672G>C synonymous_variant 0.26
clpC1 4040036 c.669C>G synonymous_variant 0.23
clpC1 4040048 c.657C>T synonymous_variant 0.28
clpC1 4040091 c.613_614delTCinsAG synonymous_variant 0.34
clpC1 4040093 c.612C>G synonymous_variant 0.34
clpC1 4040105 c.600C>G synonymous_variant 0.39
clpC1 4040147 c.558A>G synonymous_variant 0.3
clpC1 4040153 c.552A>G synonymous_variant 0.27
clpC1 4040159 c.546G>C synonymous_variant 0.29
clpC1 4040162 c.543G>C synonymous_variant 0.21
clpC1 4040171 c.534C>G synonymous_variant 0.17
clpC1 4040594 c.111G>T synonymous_variant 0.15
clpC1 4040597 c.108C>T synonymous_variant 0.14
clpC1 4040600 c.105A>G synonymous_variant 0.14
clpC1 4040603 c.102T>G synonymous_variant 0.14
clpC1 4040636 c.69C>G synonymous_variant 0.17
clpC1 4040644 c.61A>C synonymous_variant 0.18
clpC1 4040654 c.51G>A synonymous_variant 0.16
clpC1 4040657 c.48T>G synonymous_variant 0.13
embC 4240484 p.Ala208Thr missense_variant 0.14
embC 4240489 c.627A>G synonymous_variant 0.13
embC 4240495 c.633T>C synonymous_variant 0.13
embC 4240512 p.Ser217Thr missense_variant 0.15
embC 4240516 c.654G>C synonymous_variant 0.15
embC 4240519 c.657T>C synonymous_variant 0.14
embC 4240678 c.816T>G synonymous_variant 0.13
embC 4240699 c.837C>A synonymous_variant 0.16
embC 4240717 c.855T>C synonymous_variant 0.17
embC 4240726 c.864G>C synonymous_variant 0.18
embC 4240741 c.879C>T synonymous_variant 0.21
embC 4240777 c.915G>A synonymous_variant 0.25
embC 4240780 c.918T>C synonymous_variant 0.24
embC 4240783 c.921G>C synonymous_variant 0.24
embC 4240795 c.933C>G synonymous_variant 0.23
embC 4240801 c.939C>T synonymous_variant 0.24
embC 4240831 c.969T>C synonymous_variant 0.29
embC 4240858 c.996G>A synonymous_variant 0.18
embC 4240859 p.Leu333Met missense_variant 0.16
embC 4240867 c.1005T>G synonymous_variant 0.15
embC 4240870 c.1008T>C synonymous_variant 0.14
embC 4240879 c.1017G>C synonymous_variant 0.15
embC 4240885 c.1023T>C synonymous_variant 0.14
embC 4241095 c.1233C>T synonymous_variant 0.16
embC 4241107 c.1245G>C synonymous_variant 0.19
embC 4241140 c.1278A>G synonymous_variant 0.16
embC 4241153 p.Ile431Leu missense_variant 0.23
embC 4241161 c.1299C>G synonymous_variant 0.19
embC 4241162 c.1300T>C synonymous_variant 0.18
embC 4241167 c.1305C>G synonymous_variant 0.17
embC 4241197 c.1335G>C synonymous_variant 0.14
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242740 p.Leu960Phe missense_variant 0.14
embA 4243460 c.228C>T synonymous_variant 1.0
embA 4244170 p.Gln313Arg missense_variant 0.14
embA 4244178 p.Ala316Ser missense_variant 0.14
embA 4244260 p.Val343Ala missense_variant 0.14
embA 4244283 p.Pro351Lys missense_variant 0.21
embA 4244291 c.1059G>C synonymous_variant 0.22
embA 4244856 p.Ala542Pro missense_variant 0.24
embA 4244885 c.1653A>G synonymous_variant 0.29
embA 4244897 c.1665T>G synonymous_variant 0.23
embA 4244903 c.1671G>C synonymous_variant 0.22
embA 4245101 c.1869G>C synonymous_variant 0.14
embA 4245137 c.1905T>C synonymous_variant 0.14
embA 4245149 c.1917C>G synonymous_variant 0.2
embA 4245182 c.1950T>C synonymous_variant 0.18
embA 4245186 p.Thr652Ala missense_variant 0.18
embA 4245224 c.1992T>C synonymous_variant 0.14
embB 4245674 c.-840A>T upstream_gene_variant 0.14
embA 4245693 p.Ile821Val missense_variant 0.16
embB 4246013 c.-501T>C upstream_gene_variant 0.14
embA 4246020 p.Ala930Thr missense_variant 0.16
embB 4246028 c.-486G>C upstream_gene_variant 0.17
embB 4246070 c.-444G>C upstream_gene_variant 0.21
embB 4246082 c.-432T>C upstream_gene_variant 0.17
embB 4246115 c.-399T>C upstream_gene_variant 0.13
embB 4246172 c.-342C>T upstream_gene_variant 0.2
embB 4246184 c.-330A>C upstream_gene_variant 0.19
embB 4246244 c.-270G>A upstream_gene_variant 0.14
embA 4246254 p.Leu1008Met missense_variant 0.24
embB 4246259 c.-255G>C upstream_gene_variant 0.24
embB 4246265 c.-249C>T upstream_gene_variant 0.21
embB 4246268 c.-246G>A upstream_gene_variant 0.21
embA 4246279 p.Ala1016Val missense_variant 0.23
embB 4246292 c.-222A>G upstream_gene_variant 0.27
embB 4246307 c.-207G>C upstream_gene_variant 0.31
embB 4246316 c.-198T>C upstream_gene_variant 0.28
embB 4246346 c.-168C>G upstream_gene_variant 0.26
embA 4246359 p.Ala1043Ser missense_variant 0.16
embB 4247348 p.Thr279Leu missense_variant 0.14
embB 4247353 c.840C>T synonymous_variant 0.14
embB 4247355 p.Ala281Gly missense_variant 0.14
embB 4247365 c.852A>C synonymous_variant 0.16
embB 4247370 p.Gly286Ala missense_variant 0.17
embB 4247386 c.873T>C synonymous_variant 0.19
embB 4247398 c.885G>C synonymous_variant 0.23
embB 4247401 c.888T>C synonymous_variant 0.23
embB 4247404 c.891G>C synonymous_variant 0.23
embB 4247407 c.894G>C synonymous_variant 0.23
embB 4247440 c.927C>G synonymous_variant 0.22
embB 4247497 c.984T>C synonymous_variant 0.14
embB 4247512 c.999T>C synonymous_variant 0.15
embB 4247554 c.1041T>C synonymous_variant 0.15
embB 4247555 p.Leu348Ile missense_variant 0.14
embB 4247566 c.1053C>G synonymous_variant 0.16
embB 4247579 p.Ala356Phe missense_variant 0.16
embB 4247590 c.1077A>G synonymous_variant 0.16
embB 4247611 c.1098G>C synonymous_variant 0.13
embB 4247722 c.1209G>C synonymous_variant 0.14
embB 4247725 c.1212G>C synonymous_variant 0.14
embB 4247743 c.1230C>G synonymous_variant 0.14
embB 4247779 c.1266C>G synonymous_variant 0.14
embB 4247785 c.1272G>C synonymous_variant 0.14
embB 4247800 c.1287A>C synonymous_variant 0.14
embB 4248407 p.Leu632Val missense_variant 0.13
embB 4249429 c.2916C>G synonymous_variant 0.14
embB 4249486 c.2973T>G synonymous_variant 0.13
embB 4249492 c.2979C>G synonymous_variant 0.13
embB 4249501 c.2988C>T synonymous_variant 0.17
embB 4249521 p.Ala1003Val missense_variant 0.16
embB 4249525 c.3012T>C synonymous_variant 0.14
embB 4249540 c.3027C>T synonymous_variant 0.14
embB 4249546 c.3033G>A synonymous_variant 0.15
embB 4249675 c.3162C>G synonymous_variant 0.13
embB 4249693 c.3180T>C synonymous_variant 0.18
embB 4249699 c.3186T>A synonymous_variant 0.19
embB 4249702 c.3189C>A synonymous_variant 0.2
embB 4249703 c.3190C>T synonymous_variant 0.2
embB 4249711 c.3198G>A synonymous_variant 0.2
embB 4249735 c.3222T>G synonymous_variant 0.14
embB 4249741 c.3228C>A synonymous_variant 0.15
embB 4249750 p.Glu1079Asp missense_variant 0.13
aftB 4267529 c.1308T>C synonymous_variant 0.13
aftB 4267535 c.1302A>G synonymous_variant 0.13
aftB 4267556 c.1281G>C synonymous_variant 0.14
aftB 4267574 c.1263G>C synonymous_variant 0.18
aftB 4267580 c.1257G>A synonymous_variant 0.19
aftB 4267592 c.1245C>G synonymous_variant 0.2
aftB 4267622 c.1215G>C synonymous_variant 0.14
aftB 4267635 p.Arg401Gln missense_variant 0.15
aftB 4267647 p.Asp397Gly missense_variant 0.88
aftB 4267856 c.981T>C synonymous_variant 0.2
aftB 4267879 p.Val320Leu missense_variant 0.14
aftB 4267891 p.Val316Ile missense_variant 0.17
aftB 4267892 p.Ile315Met missense_variant 0.17
aftB 4267898 c.939T>C synonymous_variant 0.19
aftB 4268978 c.-142C>T upstream_gene_variant 0.17
aftB 4268994 c.-158T>C upstream_gene_variant 0.24
aftB 4269000 c.-164G>A upstream_gene_variant 0.21
aftB 4269006 c.-170T>C upstream_gene_variant 0.21
aftB 4269012 c.-176G>C upstream_gene_variant 0.2
aftB 4269027 c.-191C>G upstream_gene_variant 0.21
aftB 4269030 c.-194C>G upstream_gene_variant 0.22
aftB 4269033 c.-197T>C upstream_gene_variant 0.22
aftB 4269045 c.-209G>C upstream_gene_variant 0.2
aftB 4269660 c.-824C>A upstream_gene_variant 0.15
ubiA 4269663 p.Met57Val missense_variant 0.15
aftB 4269669 c.-833G>T upstream_gene_variant 0.18
ubiA 4269676 p.Ser53Thr missense_variant 0.2
aftB 4269678 c.-842C>G upstream_gene_variant 0.21
ubiA 4269688 p.Val49Ala missense_variant 0.22
aftB 4269690 c.-854C>T upstream_gene_variant 0.23
aftB 4269699 c.-863C>A upstream_gene_variant 0.23
aftB 4269705 c.-869T>C upstream_gene_variant 0.23
ubiA 4269710 p.Gly42Arg missense_variant 0.21
ubiA 4269715 p.Leu40Ala missense_variant 0.19
aftB 4269723 c.-887G>C upstream_gene_variant 0.19
ethA 4326346 c.1128C>G synonymous_variant 0.15
ethA 4326352 c.1122T>G synonymous_variant 0.17
ethA 4326535 c.939G>C synonymous_variant 0.14
ethR 4326556 c.-993A>G upstream_gene_variant 0.2
ethA 4326563 p.Ala304Gly missense_variant 0.19
ethR 4326565 c.-984C>A upstream_gene_variant 0.19
ethR 4326591 c.-958A>G upstream_gene_variant 0.17
ethR 4326598 c.-951T>C upstream_gene_variant 0.19
ethR 4326610 c.-939G>C upstream_gene_variant 0.17
ethR 4326613 c.-936G>A upstream_gene_variant 0.17
ethR 4326628 c.-921G>A upstream_gene_variant 0.18
ethR 4326637 c.-912T>G upstream_gene_variant 0.16
ethR 4326640 c.-909C>T upstream_gene_variant 0.17
ethR 4327300 c.-249G>A upstream_gene_variant 0.16
ethR 4327318 c.-231T>G upstream_gene_variant 0.23
ethR 4327327 c.-222A>G upstream_gene_variant 0.15
ethR 4327330 c.-219G>A upstream_gene_variant 0.19
ethR 4327335 c.-214A>G upstream_gene_variant 0.17
ethR 4327336 c.-213A>G upstream_gene_variant 0.14
ethR 4327390 c.-159C>G upstream_gene_variant 0.15
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
whiB6 4338711 c.-190C>A upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0