Rv0006 - c.534A>C
Drug resistance types
27 Sensitive
7 RR-TB
46 HR-TB
12 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
98 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.2 | 4 |
| lineage4.9;lineage6.3 | 6 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage2.1;lineage4.9 | 4 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.9.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.9 | 53 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.8 | 3 |
| lineage4.3.4.2.1 | 1 |
| 8 | |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.5 | 1 |
| M.canetti;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4 | 3 |
| lineage5.2 | 2 |
| lineage2.2.1 | 12 |
| lineage2.1 | 1 |
| La3 | 2 |
| La3;lineage4.9 | 15 |
| lineage1.1.3.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage2.2.1.1 | 4 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| M.canetti;lineage2.2 | 2 |
| lineage4.6.4;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4 | 1 |
| lineage4.6.3;lineage4.9 | 2 |
| La1.7;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage3 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.3.4 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.2.1 | 1 |
| La1.7.1 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La1;lineage4.9 | 1 |
| La1.8.1 | 1 |
| lineage4.3.4.1 | 2 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| lineage3.1.2.1;lineage4 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.6.1.1 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.2 | 1 |
| M.canetti;lineage4.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 194 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1175127 | Other | lineage2.2.1.2 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR11466061 | Sensitive | lineage4.9.1 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4799025 | Other | lineage4.8 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4810741 | HR-TB | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR4811075 | Other | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR13285191 | Sensitive | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR4816478 | HR-TB | lineage4 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR1172728 | RR-TB | La3 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR28868888 | Other | lineage1.1.3.2 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR13285192 | Sensitive | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR29097004 | Other | lineage3 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR29096897 | Sensitive | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4811142 | RR-TB | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR28119753 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR1165699 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR7240033 | Other | La1.8.1 | None | SRR6832249 | Sensitive | lineage2.2.1 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR26331611 | Sensitive | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR9786843 | Other | None | SRR1184381 | MDR-TB | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR28351455 | Other | lineage3.1.2.1;lineage4 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4819241 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR5535933 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | SRR16156817 | Other | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR990545 | Other | lineage3 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR3283032 | Other | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR28119777 | Other | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR6359082 | Other | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR212001 | HR-TB | None | ERR212033 | Other | lineage4.9 | None | SRR28119805 | Other | lineage4.9 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | ERR4407463 | HR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR26399239 | Sensitive | lineage4.9 | None |
|---|
