Rv0006 - c.534A>C


Drug resistance types
25 Sensitive 7 RR-TB 49 HR-TB 12 MDR-TB 2 Pre-XDR-TB 2 XDR-TB 91 Other
lineage Counts
lineage Count
lineage4.9 49
lineage4.6.3;lineage4.9 2
4
La3;lineage4.9 15
M.canetti;lineage2.2 2
lineage4.2;lineage4.6.3;lineage4.9 1
M.canetti;lineage4.6.4;lineage4.9 2
lineage3.1.2.1;lineage4 1
lineage2.1;lineage4.9;lineage6.3 3
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La3;M.canetti;lineage2.2.1 1
lineage4.2;lineage4.6.3;lineage4.9.1 2
La1.7.1 1
La3;lineage2.1;lineage4.9;lineage6.3 3
lineage2.2 3
La1.7;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
La3;lineage4.3.4 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 1
lineage4 3
lineage4.2.1 1
La3 2
lineage2.2.1.1 4
M.canetti;lineage2.1;lineage4.9 2
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
La1;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage2.2.1 6
lineage4.9;lineage7 1
lineage4.3.4.1 2
La1.7;lineage4.2 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage4.9;lineage6.3 6
lineage4.6.4;lineage4.9 1
lineage4.9;lineage6.1.3 1
La1.7;lineage4.9;lineage6 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.2.1.2 2
La3;lineage2 1
La3;lineage2.1;lineage4.9 3
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
lineage2.1;lineage4.9 4
lineage4.8 3
La1.6;La3;M.canetti;lineage4.2.2 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage4.3.1;lineage4.9;lineage6 1
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
lineage4.6.3;lineage4.9;lineage6.3 1
M.canetti;lineage4.9 2
lineage2.2.1;lineage6.3 1
La1.2;La1.8.1 1
M.canetti;lineage2.2.2;lineage6.2 2
lineage5.2 2
lineage1.1.3.2 1
lineage2.1 2
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
La1.7;M.canetti;lineage4.9 2
M.canetti;lineage4.2 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage2.2.1.2;lineage7 1
lineage4.5 1
lineage4.6.1.1 2
La3;lineage2.1;lineage6.3 1
La3;lineage4 1
lineage4.3.4.2.1 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
M.canetti;lineage4.2;lineage4.9 1
lineage4.9.1 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1;lineage2;lineage4.9 1
lineage2.1;lineage4.1.4;lineage4.9 1
lineage2.1;lineage4.3.2;lineage4.9 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage3 1
La1.7;lineage4.9;lineage7 1
spoligotype Counts
spoligotype Count
None 188
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5341456 Other lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
ERR212001 HR-TB None
SRR1167384 Other La3;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
ERR13285192 Sensitive lineage4.9 None
ERR3439432 Other M.canetti;lineage4.6.4;lineage4.9 None
SRR28351455 Other lineage3.1.2.1;lineage4 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1173778 Other lineage4.9 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
SRR26399973 Other La3;lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR20969708 HR-TB lineage2.2 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR6045548 Sensitive lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR2446566 Other lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR4815441 HR-TB lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1181349 Sensitive lineage4 None
ERR4819877 HR-TB lineage4.9 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR4817731 HR-TB lineage4.9 None
ERR4816478 HR-TB lineage4 None
SRR1172728 RR-TB La3 None
SRR1181091 Other lineage2.2.1.1 None
ERR176643 Other La3;lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR133825 HR-TB La1;lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR14782405 HR-TB lineage4.9 None
SRR1172817 Other La3 None
SRR1180172 Other lineage2.2.1 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR3797046 HR-TB lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
ERR11465353 Sensitive lineage4.3.4.1 None
SRR6832249 Sensitive lineage2.2.1 None
SRR1184024 RR-TB lineage2.2.1.1 None
SRR23961559 Other La1.7;lineage4.2 None
SRR26331611 Sensitive lineage4.9 None
SRR1183144 Other lineage2.2.1 None
ERR6359082 Other lineage4.9 None
SRR6046485 Other lineage4.9 None
SRR3675390 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR11252612 Other La3;lineage4.9 None
ERR212033 Other lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR502889 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR4188322 Other lineage4.6.4;lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
SRR6045555 Other lineage4.9 None
SRR6044838 Other lineage4.9 None
SRR6045217 Sensitive lineage4.9 None
SRR3675586 Other M.canetti;lineage4.6.4;lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR4407463 HR-TB None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR181744 HR-TB La3;lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1175127 Other lineage2.2.1.2 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR4817735 Other lineage4.8 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR4820773 HR-TB lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR20969731 Other lineage2.2.1 None
SRR1165628 Other La3;lineage4.9 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR4799025 Other lineage4.8 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR2027263 Other lineage4 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
SRR7240033 Other La1.2;La1.8.1 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR3283032 Other lineage4.9 None
ERR4816466 HR-TB lineage4.9 None
SRR28119777 Other lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR4872094 MDR-TB lineage5.2 None
SRR1172796 Sensitive lineage2.2.1.2 None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR11465352 Sensitive lineage4.3.4.1 None
SRR28868888 Other lineage1.1.3.2 None
SRR29017461 Other La3;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
SRR5341418 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
SRR1180147 Other lineage2.2.1.1 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR4796929 Sensitive lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
SRR20970016 Other lineage2.2 None
ERR9119500 MDR-TB lineage5.2 None
ERR9786843 Other None
SRR1184381 MDR-TB None
SRR28119805 Other lineage4.9 None
SRR12142341 HR-TB lineage2.1 None
ERR3283055 HR-TB lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR28119827 Other La3;lineage4.9 None
SRR1181289 Other lineage2.2.1 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR13265528 Other lineage4.9;lineage6.3 None
ERR4819241 Other lineage4.9 None
SRR1180137 Other lineage2.2.1 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
SRR26399239 Sensitive lineage4.9 None
ERR752229 Other lineage4.5 None
ERR1199132 Sensitive lineage4.6.1.1 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR11252736 Other lineage4.9 None
ERR2514327 HR-TB lineage4.8 None
ERR3283028 Other La3;lineage4 None
ERR161034 HR-TB lineage4.3.4.2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1183049 RR-TB lineage2.2 None
ERR5311079 Other La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
SRR5535933 Other lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
ERR11466061 Sensitive lineage4.9.1 None
ERR987765 Sensitive lineage4.6.1.1 None
SRR6045526 Other lineage4.9 None
SRR10809074 Sensitive lineage4.9 None
ERR3283014 Sensitive La3;lineage4.9 None
SRR5341330 Other lineage4.9 None
SRR16156817 Other lineage4.9 None
SRR26399490 Sensitive lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR6045219 HR-TB lineage4.9 None
ERR3797063 Sensitive La3;lineage4.9 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR067699 Sensitive La1;lineage2;lineage4.9 None
ERR161037 Other lineage4.9 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR1035162 Other M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR990545 Other lineage3 None
SRR1165699 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
ERR13285191 Sensitive lineage4.9 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
SRR6046594 Sensitive lineage4.9 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR1184294 Other lineage4.9 None