Rv3596c - c.51G>A
Drug resistance types
78 Sensitive
6 RR-TB
194 HR-TB
18 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
109 Other
lineage Counts
| lineage | Count |
|---|---|
| 205 | |
| lineage4.1.2 | 2 |
| lineage4 | 77 |
| lineage4.8 | 1 |
| lineage4.3.2.1 | 1 |
| lineage3.1 | 2 |
| lineage4.9 | 46 |
| lineage2.2 | 5 |
| lineage4;lineage3.1 | 1 |
| La1.2 | 1 |
| La1 | 1 |
| lineage3.1.2 | 1 |
| lineage2.2.1 | 22 |
| lineage4.3.4 | 2 |
| lineage4.5 | 1 |
| lineage4.3.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.1.2.1 | 4 |
| lineage6.3.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage2.2.2 | 1 |
| La3 | 1 |
| lineage4.4.1.1 | 2 |
| lineage2.2.1.1 | 3 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.3 | 1 |
| lineage2 | 1 |
| lineage4.5;lineage2.2.1.1 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| La1.8.1 | 1 |
| lineage4.1 | 4 |
| lineage4.1.1 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage2.1 | 1 |
| lineage4.3 | 1 |
| lineage3 | 1 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.8;La3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.2.1 | 1 |
| La2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 410 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323039 | HR-TB | None | SRR7535082 | Sensitive | lineage4 | None | SRR7535086 | Other | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323038 | HR-TB | None | ERR323041 | HR-TB | None | ERR323063 | HR-TB | None | ERR323043 | HR-TB | None | ERR323045 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323066 | Sensitive | lineage4 | None | ERR067681 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | ERR036207 | Other | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR067699 | HR-TB | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1034652 | Other | None | ERR1035122 | Sensitive | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063859 | HR-TB | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR133986 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR108471 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283025 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3445501 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3468544 | HR-TB | None | ERR3797015 | HR-TB | None | ERR363456 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3797046 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797044 | Other | None | ERR3797048 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797061 | Other | None | ERR3797086 | Other | lineage4.9 | None | ERR3797082 | Other | lineage4.9 | None | ERR400326 | Sensitive | lineage4 | None | ERR387051 | HR-TB | None | ERR4024991 | Other | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4188247 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4407463 | HR-TB | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769521 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4798406 | HR-TB | None | ERR4797474 | Other | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797313 | HR-TB | None | ERR4798099 | Other | None | ERR4798262 | HR-TB | La1 | None | ERR4798431 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR4811030 | Sensitive | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR6358837 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359045 | HR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR6866022 | Other | None | ERR6866410 | Sensitive | None | ERR4811105 | HR-TB | None | ERR4811493 | HR-TB | None | ERR4812155 | Sensitive | None | ERR6358979 | Other | None | ERR6359069 | Other | lineage4.9 | None | ERR736856 | HR-TB | lineage4 | None | ERR6866639 | Other | None | ERR702406 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736839 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR736835 | HR-TB | None | ERR736848 | HR-TB | None | ERR736865 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR752229 | Other | lineage4.5 | None | ERR9634265 | Sensitive | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9119669 | HR-TB | None | ERR8976043 | HR-TB | None | ERR9786604 | Other | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR987722 | HR-TB | None | ERR9786843 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1173400 | Other | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1173118 | Other | None | SRR1173166 | Other | lineage4.9 | None | SRR1172857 | MDR-TB | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172951 | Other | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173777 | Other | lineage4 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175049 | RR-TB | None | SRR1173788 | Other | None | SRR1174897 | HR-TB | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1175074 | MDR-TB | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184372 | MDR-TB | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184380 | HR-TB | None | SRR12142341 | HR-TB | None | SRR1184388 | Other | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR14801749 | Sensitive | None | SRR12416824 | HR-TB | None | SRR15369010 | HR-TB | lineage4.5;lineage2.2.1.1 | None | SRR1640750 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR1791747 | Other | La1.8.1 | None | SRR20632814 | Sensitive | lineage4 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR3675455 | Sensitive | lineage4 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | lineage4.1 | None | ERR176751 | HR-TB | None | ERR176779 | HR-TB | None | ERR176778 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | ERR4815604 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675465 | HR-TB | None | SRR3675486 | HR-TB | None | ERR158583 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675221 | HR-TB | None | ERR181744 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675229 | Other | lineage4 | None | SRR3675236 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675234 | Other | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675247 | Other | lineage4.9 | None | ERR176568 | Other | lineage4.3 | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675279 | Other | None | SRR3675383 | HR-TB | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675456 | HR-TB | None | SRR3675387 | Sensitive | None | ERR176740 | HR-TB | None | SRR3675522 | Other | None | SRR3675502 | Other | None | ERR212001 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675545 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675550 | Other | None | ERR212033 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3675555 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | ERR212125 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR212121 | HR-TB | None | ERR4816470 | Other | lineage3 | None | ERR212138 | HR-TB | lineage4 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816656 | HR-TB | None | ERR4816738 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR2446566 | Other | lineage4.1 | None | ERR4818929 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4819051 | Other | lineage4 | None | ERR4818561 | HR-TB | lineage4 | None | ERR4818615 | Other | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341418 | Other | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341303 | RR-TB | lineage4 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341310 | Other | lineage1.1.2 | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341333 | HR-TB | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR2693232 | Other | lineage4.9 | None | SRR5341456 | Other | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | SRR5341470 | HR-TB | None | SRR5341469 | Other | lineage4 | None | ERR2693231 | Other | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693230 | Other | None | ERR2693239 | HR-TB | None | SRR6045526 | HR-TB | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR5535933 | HR-TB | None | SRR6045519 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6046151 | Sensitive | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044780 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044790 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044897 | Sensitive | lineage4.9 | None | SRR6045399 | Other | None | SRR6045010 | Other | lineage4 | None | SRR6045952 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6045327 | HR-TB | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046066 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046362 | HR-TB | None | SRR6325444 | HR-TB | None | ERR4830353 | Other | None | SRR6046397 | Other | None | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046492 | Other | None | SRR6325447 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | ERR323036 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4831117 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831638 | Sensitive | None | ERR294248 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6832249 | Other | lineage2.2.1 | None | SRR6789626 | Other | None | ERR502510 | Sensitive | lineage4 | None | ERR294266 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | SRR8217918 | HR-TB | None | ERR502943 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None |
|---|
