TB-Profiler result

Run: SRR069978
Summary

Run ID: SRR069978

Sample name:

Date: 02-04-2023 14:18:09

Number of reads: 1711216

Percentage reads mapped: 76.54

Strain: lineage2.2.2

Drug-resistance: Pre-XDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 0.98
lineage2.2.2 East-Asian (Beijing) Beijing-RD105/RD207 RD105;RD207 0.94
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gyrA 7570 p.Ala90Val missense_variant 0.9 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
rpoB 761098 p.Ser431Thr missense_variant 0.13 rifampicin
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.27 streptomycin
katG 2155108 c.1002_1003dupGA frameshift_variant 0.97 isoniazid
kasA 2518310 p.Asp66Asn missense_variant 1.0 isoniazid
embB 4247448 p.His312Arg missense_variant 0.17 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7710 c.409T>C synonymous_variant 0.17
gyrA 7715 c.414G>C synonymous_variant 0.18
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 0.16
gyrA 7859 c.558A>C synonymous_variant 0.13
gyrA 8111 c.810G>C synonymous_variant 0.14
gyrA 8156 c.855T>C synonymous_variant 0.17
gyrA 8168 c.867A>G synonymous_variant 0.17
gyrA 8174 c.873C>G synonymous_variant 0.15
gyrA 8177 c.876A>C synonymous_variant 0.15
gyrA 8619 c.1318T>C synonymous_variant 0.14
gyrA 8624 c.1323G>C synonymous_variant 0.15
gyrA 8627 c.1326C>G synonymous_variant 0.2
gyrA 8636 c.1335A>C synonymous_variant 0.15
gyrA 8645 c.1344C>G synonymous_variant 0.14
gyrA 8852 c.1551T>C synonymous_variant 0.15
gyrA 8867 c.1566A>G synonymous_variant 0.15
gyrA 8870 c.1569G>C synonymous_variant 0.15
gyrA 8873 c.1572A>C synonymous_variant 0.15
gyrA 8897 c.1596T>C synonymous_variant 0.15
gyrA 8903 c.1602T>C synonymous_variant 0.16
gyrA 8918 c.1617C>G synonymous_variant 0.18
gyrA 8966 c.1665C>G synonymous_variant 0.17
gyrA 8967 p.Ala556Arg missense_variant 0.16
gyrA 8987 c.1686C>G synonymous_variant 0.14
gyrA 8990 c.1689C>G synonymous_variant 0.13
gyrA 8996 c.1695T>C synonymous_variant 0.14
gyrA 8998 p.Leu566Trp missense_variant 0.14
gyrA 9191 c.1890G>C synonymous_variant 0.13
gyrA 9200 c.1899A>G synonymous_variant 0.19
gyrA 9204 p.Ser635Thr missense_variant 0.19
gyrA 9227 c.1926C>G synonymous_variant 0.15
gyrA 9230 c.1929T>C synonymous_variant 0.15
gyrA 9233 c.1932C>T synonymous_variant 0.15
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9323 c.2022C>G synonymous_variant 0.16
gyrA 9335 c.2034G>C synonymous_variant 0.15
gyrA 9345 c.2044A>C synonymous_variant 0.14
fgd1 490851 c.69A>C synonymous_variant 0.18
fgd1 490887 c.105G>C synonymous_variant 0.25
fgd1 490902 c.120T>C synonymous_variant 0.16
fgd1 490905 c.123T>C synonymous_variant 0.17
fgd1 490911 c.129T>G synonymous_variant 0.13
fgd1 491286 c.504G>C synonymous_variant 0.19
fgd1 491292 c.510G>C synonymous_variant 0.14
fgd1 491319 c.537G>C synonymous_variant 0.3
fgd1 491331 c.549G>A synonymous_variant 0.23
fgd1 491583 c.801G>A synonymous_variant 0.15
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575746 c.399C>G synonymous_variant 0.14
mshA 575767 c.420G>A synonymous_variant 0.26
mshA 575771 p.Val142Ser missense_variant 0.26
mshA 575779 c.432A>G synonymous_variant 0.32
mshA 575821 c.474G>C synonymous_variant 0.36
mshA 575824 c.477T>G synonymous_variant 0.36
mshA 575864 c.517T>C synonymous_variant 0.19
ccsA 619947 c.57C>G synonymous_variant 0.19
ccsA 619953 c.63C>G synonymous_variant 0.23
ccsA 619969 p.Val27Ile missense_variant 0.16
ccsA 619989 c.99G>C synonymous_variant 0.15
ccsA 620445 c.555A>G synonymous_variant 0.14
ccsA 620778 c.888T>C synonymous_variant 0.18
ccsA 620784 c.894C>G synonymous_variant 0.21
ccsA 620787 c.897C>G synonymous_variant 0.21
ccsA 620809 c.919C>T synonymous_variant 0.28
ccsA 620829 c.939G>C synonymous_variant 0.21
ccsA 620835 c.945C>G synonymous_variant 0.14
ccsA 620838 c.948C>T synonymous_variant 0.15
ccsA 620844 c.954C>T synonymous_variant 0.16
rpoB 760223 c.417T>C synonymous_variant 0.16
rpoB 760235 c.429T>C synonymous_variant 0.16
rpoB 760328 c.522G>C synonymous_variant 0.14
rpoB 760331 c.525G>C synonymous_variant 0.13
rpoB 760337 c.531C>G synonymous_variant 0.15
rpoB 760376 p.Asp190Glu missense_variant 0.15
rpoB 760406 c.600G>C synonymous_variant 0.29
rpoB 760418 c.612G>C synonymous_variant 0.32
rpoB 760424 c.618C>G synonymous_variant 0.32
rpoB 760430 c.624T>C synonymous_variant 0.3
rpoB 760475 c.669A>G synonymous_variant 0.17
rpoB 760634 c.828T>C synonymous_variant 0.15
rpoB 760646 c.840C>G synonymous_variant 0.15
rpoB 760655 c.849A>G synonymous_variant 0.21
rpoB 760661 c.855A>C synonymous_variant 0.18
rpoB 760670 c.864G>C synonymous_variant 0.13
rpoB 760674 c.868T>C synonymous_variant 0.13
rpoB 760679 c.873A>G synonymous_variant 0.15
rpoB 760683 c.877T>C synonymous_variant 0.17
rpoB 760869 p.Val355Ile missense_variant 0.14
rpoB 760886 c.1080A>G synonymous_variant 0.15
rpoB 760925 c.1119T>C synonymous_variant 0.13
rpoB 760928 c.1122G>C synonymous_variant 0.14
rpoB 760946 c.1140A>G synonymous_variant 0.16
rpoB 760970 c.1164G>C synonymous_variant 0.18
rpoB 760982 c.1176G>C synonymous_variant 0.23
rpoB 760985 c.1179G>C synonymous_variant 0.23
rpoB 760991 c.1185G>C synonymous_variant 0.17
rpoB 761180 c.1374A>C synonymous_variant 0.19
rpoB 761183 c.1377T>G synonymous_variant 0.18
rpoB 761189 c.1383T>G synonymous_variant 0.16
rpoB 761255 c.1449T>G synonymous_variant 0.17
rpoB 761297 c.1491C>T synonymous_variant 0.17
rpoB 761327 c.1521A>G synonymous_variant 0.25
rpoB 761360 c.1554T>C synonymous_variant 0.25
rpoB 761362 p.Ser519Thr missense_variant 0.26
rpoB 761373 p.Val523Gln missense_variant 0.13
rpoB 761492 c.1686G>C synonymous_variant 0.18
rpoB 761510 c.1704T>C synonymous_variant 0.24
rpoB 761531 c.1725C>G synonymous_variant 0.19
rpoB 761537 c.1731C>G synonymous_variant 0.18
rpoB 761570 c.1764T>C synonymous_variant 0.22
rpoB 761573 c.1767C>G synonymous_variant 0.26
rpoB 761579 c.1773G>C synonymous_variant 0.21
rpoB 761606 c.1800C>G synonymous_variant 0.15
rpoB 761612 c.1806G>C synonymous_variant 0.14
rpoB 761615 c.1809A>C synonymous_variant 0.15
rpoB 761636 c.1830G>T synonymous_variant 0.16
rpoB 761885 c.2079T>C synonymous_variant 0.14
rpoB 761948 c.2142G>C synonymous_variant 0.21
rpoB 761954 c.2148C>G synonymous_variant 0.21
rpoB 761969 c.2163G>A synonymous_variant 0.21
rpoB 761999 c.2193G>C synonymous_variant 0.24
rpoB 762008 c.2202C>G synonymous_variant 0.15
rpoB 762176 c.2370T>C synonymous_variant 0.13
rpoB 762185 c.2379G>C synonymous_variant 0.15
rpoB 762218 c.2412T>G synonymous_variant 0.24
rpoB 762254 c.2448T>C synonymous_variant 0.23
rpoB 762266 c.2460T>C synonymous_variant 0.22
rpoB 762284 c.2478G>C synonymous_variant 0.22
rpoB 762293 c.2487T>C synonymous_variant 0.19
rpoB 762317 c.2511A>G synonymous_variant 0.17
rpoB 762329 c.2523G>C synonymous_variant 0.17
rpoB 762338 c.2532T>C synonymous_variant 0.15
rpoC 762404 c.-966T>C upstream_gene_variant 0.12
rpoC 762836 c.-534C>G upstream_gene_variant 0.18
rpoC 762857 c.-513C>G upstream_gene_variant 0.2
rpoC 762860 c.-510G>C upstream_gene_variant 0.18
rpoC 762863 c.-507T>C upstream_gene_variant 0.19
rpoC 762929 c.-441G>C upstream_gene_variant 0.25
rpoC 763028 c.-342T>C upstream_gene_variant 0.19
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.19
rpoC 763040 c.-330C>G upstream_gene_variant 0.23
rpoC 763070 c.-300T>C upstream_gene_variant 0.23
rpoC 763076 c.-294C>G upstream_gene_variant 0.26
rpoC 763085 c.-285C>G upstream_gene_variant 0.26
rpoC 763115 c.-255T>C upstream_gene_variant 0.16
rpoC 763226 c.-144A>G upstream_gene_variant 0.16
rpoC 763238 c.-132T>C upstream_gene_variant 0.19
rpoC 763268 c.-102C>G upstream_gene_variant 0.17
rpoC 763402 c.33C>G synonymous_variant 0.16
rpoC 763411 c.42T>G synonymous_variant 0.16
rpoC 763414 c.45T>C synonymous_variant 0.15
rpoC 763441 c.72C>G synonymous_variant 0.17
rpoC 763444 c.75T>C synonymous_variant 0.19
rpoC 763456 c.87A>G synonymous_variant 0.16
rpoC 763468 c.99G>C synonymous_variant 0.19
rpoC 763486 c.117T>C synonymous_variant 0.19
rpoC 763528 c.159G>A synonymous_variant 0.24
rpoC 763546 c.177A>G synonymous_variant 0.27
rpoC 763570 c.201G>C synonymous_variant 0.2
rpoC 763594 c.225C>T synonymous_variant 0.25
rpoC 763633 c.264T>C synonymous_variant 0.17
rpoC 763636 c.267T>C synonymous_variant 0.19
rpoC 763642 c.273G>C synonymous_variant 0.15
rpoC 764040 p.Ser224Asn missense_variant 0.14
rpoC 764044 c.675T>C synonymous_variant 0.16
rpoC 764059 c.690G>C synonymous_variant 0.18
rpoC 764083 c.714A>G synonymous_variant 0.21
rpoC 764098 c.729A>G synonymous_variant 0.2
rpoC 764101 c.732C>G synonymous_variant 0.17
rpoC 764110 c.741C>T synonymous_variant 0.14
rpoC 764131 c.762T>C synonymous_variant 0.13
rpoC 764257 c.888G>C synonymous_variant 0.21
rpoC 764266 c.897T>C synonymous_variant 0.22
rpoC 764269 c.900G>C synonymous_variant 0.26
rpoC 764282 c.913_915delTCGinsAGC synonymous_variant 0.24
rpoC 764365 c.996C>T synonymous_variant 0.25
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.14
rpoC 764405 c.1036A>C synonymous_variant 0.2
rpoC 764431 c.1062G>C synonymous_variant 0.16
rpoC 764434 c.1065A>G synonymous_variant 0.15
rpoC 764446 c.1077T>C synonymous_variant 0.17
rpoC 764449 c.1080G>C synonymous_variant 0.16
rpoC 764458 c.1089G>C synonymous_variant 0.14
rpoC 764461 c.1092A>G synonymous_variant 0.14
rpoC 764503 c.1134G>C synonymous_variant 0.14
rpoC 764521 c.1152T>C synonymous_variant 0.24
rpoC 764536 c.1167G>C synonymous_variant 0.2
rpoC 764539 c.1170C>G synonymous_variant 0.14
rpoC 764560 c.1191T>C synonymous_variant 0.14
rpoC 764695 c.1326T>C synonymous_variant 0.24
rpoC 764716 c.1347G>C synonymous_variant 0.26
rpoC 764752 c.1383G>C synonymous_variant 0.25
rpoC 764764 c.1395T>C synonymous_variant 0.23
rpoC 764791 c.1422C>G synonymous_variant 0.18
rpoC 765330 p.Ser654Asn missense_variant 0.14
rpoC 765349 c.1980T>C synonymous_variant 0.22
rpoC 765352 c.1983G>C synonymous_variant 0.29
rpoC 765383 p.Met672Leu missense_variant 0.33
rpoC 765404 p.Leu679Val missense_variant 0.25
rpoC 765409 c.2040T>C synonymous_variant 0.27
rpoC 765412 c.2043T>C synonymous_variant 0.28
rpoC 765421 c.2052C>G synonymous_variant 0.17
rpoC 765451 c.2082C>G synonymous_variant 0.22
rpoC 765452 p.Ala695Ser missense_variant 0.23
rpoC 765478 c.2109T>C synonymous_variant 0.23
rpoC 765499 c.2130C>G synonymous_variant 0.24
rpoC 765508 c.2139C>G synonymous_variant 0.19
rpoC 765541 c.2172C>G synonymous_variant 0.29
rpoC 765553 c.2184C>T synonymous_variant 0.25
rpoC 765556 c.2187G>C synonymous_variant 0.22
rpoC 765559 c.2190G>C synonymous_variant 0.24
rpoC 765578 c.2209C>T synonymous_variant 0.28
rpoC 765583 c.2214G>T synonymous_variant 0.2
rpoC 765613 p.His748Gln missense_variant 0.14
rpoC 765811 c.2442T>C synonymous_variant 0.13
rpoC 765814 c.2445A>G synonymous_variant 0.14
rpoC 765835 c.2466C>T synonymous_variant 0.14
rpoC 765883 c.2514C>G synonymous_variant 0.12
rpoC 765928 c.2559C>G synonymous_variant 0.19
rpoC 765967 c.2598C>T synonymous_variant 0.2
rpoC 765985 c.2616C>T synonymous_variant 0.13
rpoC 765994 c.2625A>T synonymous_variant 0.14
rpoC 766096 c.2727G>C synonymous_variant 0.17
rpoC 766105 c.2736C>T synonymous_variant 0.19
rpoC 766141 c.2772C>T synonymous_variant 0.15
rpoC 766142 c.2773C>T synonymous_variant 0.13
rpoC 766543 c.3174C>T synonymous_variant 0.18
rpoC 766549 c.3180G>C synonymous_variant 0.21
rpoC 766573 c.3204T>C synonymous_variant 0.2
rpoC 766583 p.Gly1072Ser missense_variant 0.16
rpoC 766588 c.3219G>A synonymous_variant 0.16
rpoC 766591 c.3222A>G synonymous_variant 0.2
rpoC 766607 p.Ile1080Leu missense_variant 0.19
rpoC 766630 c.3261G>C synonymous_variant 0.18
rpoC 766645 c.3276A>G synonymous_variant 0.17
rpoC 766651 c.3282T>C synonymous_variant 0.18
rpoC 766657 c.3288A>G synonymous_variant 0.17
rpoC 766672 c.3303T>C synonymous_variant 0.21
rpoC 766726 c.3357T>C synonymous_variant 0.18
rpoC 766738 c.3369G>T synonymous_variant 0.16
rpoC 766750 c.3381C>G synonymous_variant 0.15
rpoC 766861 c.3492G>C synonymous_variant 0.14
rpoC 766864 c.3495G>C synonymous_variant 0.15
rpoC 766918 c.3549C>T synonymous_variant 0.13
rpoC 767062 c.3693C>A synonymous_variant 0.15
rpoC 767074 c.3705T>C synonymous_variant 0.14
rpoC 767098 c.3729T>C synonymous_variant 0.22
rpoC 767119 c.3750A>G synonymous_variant 0.21
rpoC 767134 c.3765C>G synonymous_variant 0.19
rpoC 767191 c.3822C>G synonymous_variant 0.16
rpoC 767206 c.3837C>G synonymous_variant 0.17
rpoC 767209 c.3840T>C synonymous_variant 0.17
rpoC 767212 c.3843G>C synonymous_variant 0.16
rpoC 767221 c.3852C>G synonymous_variant 0.16
rpoC 767230 c.3861G>C synonymous_variant 0.15
rpoC 767233 c.3864T>C synonymous_variant 0.17
rpoC 767263 c.3894T>C synonymous_variant 0.13
rpoC 767264 p.Ala1299Gln missense_variant 0.13
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775909 p.Leu858Phe missense_variant 0.15
mmpL5 775916 c.2565T>G synonymous_variant 0.17
mmpL5 775937 c.2544G>C synonymous_variant 0.15
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776706 p.Tyr592Phe missense_variant 0.17
mmpL5 776708 c.1773C>T synonymous_variant 0.15
mmpL5 776717 c.1764A>G synonymous_variant 0.14
mmpL5 776741 c.1740C>G synonymous_variant 0.14
mmpL5 776744 c.1737C>G synonymous_variant 0.23
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781631 c.72G>C synonymous_variant 0.17
rpsL 781649 c.90T>C synonymous_variant 0.15
rpsL 781655 c.96T>C synonymous_variant 0.19
rpsL 781682 c.123T>C synonymous_variant 0.18
rpsL 781715 c.156T>C synonymous_variant 0.16
rpsL 781793 c.234G>C synonymous_variant 0.29
rpsL 781832 c.273T>C synonymous_variant 0.24
rpsL 781841 c.282C>G synonymous_variant 0.27
rpsL 781859 c.300T>C synonymous_variant 0.16
rpsL 781868 c.309T>C synonymous_variant 0.15
rpsL 781871 c.312G>C synonymous_variant 0.21
rpsL 781892 c.333A>G synonymous_variant 0.2
rpsL 781898 c.339A>T synonymous_variant 0.15
rplC 800612 c.-197A>G upstream_gene_variant 0.28
rplC 800618 c.-191T>C upstream_gene_variant 0.26
rplC 800648 c.-161A>C upstream_gene_variant 0.17
rplC 800654 c.-155T>C upstream_gene_variant 0.19
rplC 800703 c.-106T>C upstream_gene_variant 0.14
rplC 800844 c.36T>C synonymous_variant 0.17
rplC 800865 c.57A>G synonymous_variant 0.21
rplC 800867 p.Ser20Asn missense_variant 0.19
rplC 800874 c.66A>G synonymous_variant 0.2
rplC 800877 c.69A>C synonymous_variant 0.17
rplC 800880 c.72A>G synonymous_variant 0.17
fbiC 1303818 c.888C>G synonymous_variant 0.17
fbiC 1303836 c.906G>C synonymous_variant 0.17
fbiC 1303845 c.915C>G synonymous_variant 0.17
fbiC 1303846 p.Phe306Val missense_variant 0.18
fbiC 1303854 c.924T>C synonymous_variant 0.29
fbiC 1303860 c.930A>C synonymous_variant 0.29
fbiC 1303881 c.951G>C synonymous_variant 0.31
fbiC 1303884 c.954T>G synonymous_variant 0.31
fbiC 1303911 c.981G>C synonymous_variant 0.21
fbiC 1303981 p.Val351Ile missense_variant 0.19
fbiC 1303995 c.1065C>T synonymous_variant 0.29
fbiC 1304001 c.1071C>G synonymous_variant 0.2
fbiC 1304008 c.1078T>C synonymous_variant 0.19
fbiC 1304034 c.1104A>G synonymous_variant 0.2
fbiC 1304040 c.1110C>G synonymous_variant 0.2
fbiC 1304046 c.1116C>G synonymous_variant 0.15
fbiC 1304049 c.1119T>G synonymous_variant 0.17
fbiC 1304080 p.Ala384Ser missense_variant 0.18
fbiC 1304091 p.Asp387Glu missense_variant 0.18
fbiC 1304092 p.Met388Leu missense_variant 0.18
fbiC 1304097 c.1167G>C synonymous_variant 0.17
fbiC 1304136 c.1206C>T synonymous_variant 0.22
fbiC 1304203 c.1276delC frameshift_variant 0.2
fbiC 1304715 c.1785G>C synonymous_variant 0.18
fbiC 1304724 c.1794A>G synonymous_variant 0.25
fbiC 1304727 c.1797A>G synonymous_variant 0.25
fbiC 1304742 c.1812T>C synonymous_variant 0.19
fbiC 1304748 c.1818T>C synonymous_variant 0.16
fbiC 1304754 c.1824G>A synonymous_variant 0.16
fbiC 1304757 c.1827A>G synonymous_variant 0.19
fbiC 1304808 c.1878C>G synonymous_variant 0.16
fbiC 1304811 c.1881C>G synonymous_variant 0.15
fbiC 1304817 c.1887T>C synonymous_variant 0.14
fbiC 1305303 c.2373T>C synonymous_variant 0.14
fbiC 1305311 p.Arg794Gln missense_variant 0.16
fbiC 1305381 c.2451G>C synonymous_variant 0.16
fbiC 1305397 p.Glu823Gln missense_variant 0.14
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.35
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.32
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.16
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.16
rrs 1472028 n.183A>T non_coding_transcript_exon_variant 0.19
rrs 1472030 n.185G>A non_coding_transcript_exon_variant 0.17
rrs 1472031 n.186G>A non_coding_transcript_exon_variant 0.19
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.21
rrs 1472044 n.199G>C non_coding_transcript_exon_variant 0.19
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.17
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.18
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.14
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.13
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.18
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.16
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.25
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.26
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.32
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 0.27
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 0.28
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.15
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.27
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.23
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.25
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.27
rrl 1474051 n.394T>C non_coding_transcript_exon_variant 0.18
rrl 1474054 n.397T>C non_coding_transcript_exon_variant 0.14
rrl 1474056 n.399T>C non_coding_transcript_exon_variant 0.18
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.31
rrl 1474104 n.447G>A non_coding_transcript_exon_variant 0.32
rrl 1474111 n.454T>C non_coding_transcript_exon_variant 0.3
rrl 1474112 n.455T>A non_coding_transcript_exon_variant 0.32
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.3
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.3
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.26
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.16
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.16
rrl 1474376 n.719T>C non_coding_transcript_exon_variant 0.26
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.24
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.14
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.21
rrl 1474904 n.1247G>A non_coding_transcript_exon_variant 0.22
rrl 1474956 n.1299C>T non_coding_transcript_exon_variant 0.29
rrl 1474959 n.1302C>T non_coding_transcript_exon_variant 0.2
rrl 1474962 n.1306delG non_coding_transcript_exon_variant 0.18
rrl 1474970 n.1313G>A non_coding_transcript_exon_variant 0.21
rrl 1474991 n.1334T>C non_coding_transcript_exon_variant 0.2
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.27
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.32
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.29
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.15
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.13
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.17
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.2
rrl 1475313 n.1656G>A non_coding_transcript_exon_variant 0.26
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.29
rrl 1475333 n.1676T>C non_coding_transcript_exon_variant 0.41
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.38
rrl 1475369 n.1712G>C non_coding_transcript_exon_variant 0.34
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.24
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.17
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.18
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.24
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.3
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.31
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.28
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.27
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.21
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.19
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.33
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.13
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.23
rrl 1476034 n.2377C>A non_coding_transcript_exon_variant 0.12
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.15
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.15
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.14
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.16
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.37
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.37
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.37
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.33
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.26
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.13
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 0.22
rrl 1476723 n.3066T>A non_coding_transcript_exon_variant 0.14
rrl 1476725 n.3068C>T non_coding_transcript_exon_variant 0.14
rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 0.14
rrl 1476732 n.3075T>C non_coding_transcript_exon_variant 0.23
rrl 1476755 n.3098G>A non_coding_transcript_exon_variant 0.19
rrl 1476759 n.3102T>C non_coding_transcript_exon_variant 0.18
inhA 1673646 c.-556T>C upstream_gene_variant 0.24
inhA 1673658 c.-544G>A upstream_gene_variant 0.24
inhA 1673660 c.-542C>A upstream_gene_variant 0.24
inhA 1673664 c.-538A>G upstream_gene_variant 0.25
inhA 1673667 c.-535A>G upstream_gene_variant 0.25
inhA 1673679 c.-523T>G upstream_gene_variant 0.23
inhA 1674507 c.306G>C synonymous_variant 0.18
inhA 1674537 c.336C>G synonymous_variant 0.16
inhA 1674542 p.Ala114Glu missense_variant 0.14
inhA 1674549 c.348G>C synonymous_variant 0.15
inhA 1674555 c.354G>A synonymous_variant 0.16
inhA 1674561 c.360C>T synonymous_variant 0.15
inhA 1674624 c.423A>C synonymous_variant 0.14
inhA 1674639 c.438C>T synonymous_variant 0.15
inhA 1674654 c.453G>C synonymous_variant 0.19
inhA 1674693 c.492C>G synonymous_variant 0.17
rpsA 1833541 c.-1T>C upstream_gene_variant 0.13
rpsA 1833568 c.27G>C synonymous_variant 0.16
rpsA 1833589 c.48A>T synonymous_variant 0.19
rpsA 1833595 c.54T>C synonymous_variant 0.21
rpsA 1833619 c.78A>C synonymous_variant 0.3
rpsA 1833661 c.120A>G synonymous_variant 0.21
rpsA 1833667 c.126C>G synonymous_variant 0.21
rpsA 1833724 c.183C>G synonymous_variant 0.27
rpsA 1833727 c.186G>C synonymous_variant 0.25
rpsA 1833742 c.201A>G synonymous_variant 0.29
rpsA 1833745 c.204G>C synonymous_variant 0.39
rpsA 1833787 c.246C>G synonymous_variant 0.34
rpsA 1833790 c.249T>A synonymous_variant 0.35
rpsA 1833799 c.258C>G synonymous_variant 0.35
rpsA 1833811 c.270G>C synonymous_variant 0.31
rpsA 1833838 c.297G>C synonymous_variant 0.24
rpsA 1833841 c.300C>G synonymous_variant 0.25
rpsA 1833847 c.306C>G synonymous_variant 0.22
rpsA 1833856 c.315A>G synonymous_variant 0.15
rpsA 1833862 c.321G>T synonymous_variant 0.17
rpsA 1833874 c.333T>C synonymous_variant 0.21
rpsA 1833928 c.387G>C synonymous_variant 0.39
rpsA 1833940 c.399C>G synonymous_variant 0.3
rpsA 1833970 c.429G>C synonymous_variant 0.36
rpsA 1833979 c.438T>C synonymous_variant 0.36
rpsA 1834000 c.459G>C synonymous_variant 0.26
rpsA 1834015 c.474G>C synonymous_variant 0.25
rpsA 1834021 c.480C>T synonymous_variant 0.26
rpsA 1834097 p.Ser186Thr missense_variant 0.16
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834225 c.684C>G synonymous_variant 0.15
rpsA 1834240 c.699T>C synonymous_variant 0.16
rpsA 1834249 c.708T>C synonymous_variant 0.22
rpsA 1834261 c.720A>C synonymous_variant 0.23
rpsA 1834264 c.723G>C synonymous_variant 0.23
rpsA 1834297 c.756C>G synonymous_variant 0.27
rpsA 1834303 c.762T>G synonymous_variant 0.27
rpsA 1834306 c.765T>C synonymous_variant 0.3
rpsA 1834348 c.807T>C synonymous_variant 0.25
rpsA 1834366 c.825A>G synonymous_variant 0.2
rpsA 1834375 c.834G>A synonymous_variant 0.21
rpsA 1834396 c.855G>C synonymous_variant 0.19
rpsA 1834411 c.870T>C synonymous_variant 0.15
rpsA 1834558 c.1017C>G synonymous_variant 0.15
rpsA 1834669 c.1128G>C synonymous_variant 0.16
rpsA 1834688 p.Ser383Cys missense_variant 0.13
rpsA 1834753 c.1212T>C synonymous_variant 0.14
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2101915 c.1128T>C synonymous_variant 0.15
ndh 2101918 c.1123_1125delAGGinsCGC synonymous_variant 0.16
ndh 2101924 c.1119T>G synonymous_variant 0.17
ndh 2101939 c.1104A>C synonymous_variant 0.23
ndh 2101960 c.1083A>G synonymous_variant 0.27
ndh 2101966 c.1077T>G synonymous_variant 0.29
ndh 2101972 c.1071G>C synonymous_variant 0.21
ndh 2101978 p.Asn355Asp missense_variant 0.26
ndh 2101988 p.Ala352Gly missense_variant 0.33
ndh 2102009 p.Ser345Asn missense_variant 0.25
ndh 2102020 c.1023A>G synonymous_variant 0.21
ndh 2102023 c.1020G>C synonymous_variant 0.21
ndh 2102026 c.1017G>C synonymous_variant 0.2
ndh 2102050 c.993T>C synonymous_variant 0.14
ndh 2102242 c.801G>A synonymous_variant 0.14
ndh 2102305 c.738T>C synonymous_variant 0.17
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155590 c.522A>G synonymous_variant 0.14
katG 2155614 p.Val166Ile missense_variant 0.21
katG 2155617 c.495T>C synonymous_variant 0.21
katG 2155632 c.480A>C synonymous_variant 0.21
katG 2155637 p.Leu159Ile missense_variant 0.21
katG 2155641 p.Lys157Asn missense_variant 0.22
katG 2155677 c.435C>G synonymous_variant 0.21
katG 2155680 c.432G>C synonymous_variant 0.23
katG 2155691 c.421T>C synonymous_variant 0.22
katG 2155695 p.Ala139Val missense_variant 0.23
katG 2155716 c.396T>C synonymous_variant 0.14
katG 2155719 c.393G>C synonymous_variant 0.14
katG 2155722 c.390G>C synonymous_variant 0.15
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2170330 p.Ala95Thr missense_variant 0.15
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2290015 c.-774A>C upstream_gene_variant 0.16
pncA 2290027 c.-786G>A upstream_gene_variant 0.12
kasA 2517947 c.-168C>T upstream_gene_variant 0.26
kasA 2517974 c.-141T>C upstream_gene_variant 0.19
kasA 2517989 c.-126T>C upstream_gene_variant 0.16
kasA 2518190 p.Ser26Ala missense_variant 0.17
kasA 2518199 p.Ile29Val missense_variant 0.17
kasA 2518222 c.108G>A synonymous_variant 0.14
kasA 2518223 c.109_111delTTGinsCTC synonymous_variant 0.14
kasA 2518234 c.120G>A synonymous_variant 0.13
kasA 2518519 c.405G>C synonymous_variant 0.2
kasA 2518528 c.414C>G synonymous_variant 0.2
kasA 2518540 c.426T>G synonymous_variant 0.25
kasA 2518561 c.447T>C synonymous_variant 0.13
kasA 2518591 c.477G>C synonymous_variant 0.13
kasA 2518687 c.573C>T synonymous_variant 0.14
kasA 2518696 c.582C>G synonymous_variant 0.14
kasA 2518702 c.588C>T synonymous_variant 0.15
kasA 2518711 c.597A>G synonymous_variant 0.14
kasA 2518714 c.600A>C synonymous_variant 0.17
kasA 2518717 c.603C>T synonymous_variant 0.14
kasA 2518732 c.618C>G synonymous_variant 0.16
kasA 2518741 c.627G>C synonymous_variant 0.17
kasA 2518747 c.633C>G synonymous_variant 0.18
kasA 2518768 c.654C>G synonymous_variant 0.18
kasA 2518783 c.669T>C synonymous_variant 0.18
kasA 2518825 c.711T>C synonymous_variant 0.13
kasA 2518855 c.741C>G synonymous_variant 0.15
kasA 2519053 c.939G>C synonymous_variant 0.14
kasA 2519062 c.948T>G synonymous_variant 0.25
kasA 2519068 c.954C>T synonymous_variant 0.22
kasA 2519072 p.Ala320Thr missense_variant 0.29
kasA 2519077 c.963G>C synonymous_variant 0.17
kasA 2519125 c.1011C>T synonymous_variant 0.15
kasA 2519137 c.1023T>C synonymous_variant 0.23
kasA 2519146 c.1032C>A synonymous_variant 0.2
kasA 2519167 c.1053T>C synonymous_variant 0.33
kasA 2519173 c.1059C>G synonymous_variant 0.33
kasA 2519176 c.1062G>A synonymous_variant 0.33
kasA 2519197 c.1083G>C synonymous_variant 0.23
kasA 2519215 c.1101C>T synonymous_variant 0.15
eis 2715424 c.-92C>G upstream_gene_variant 0.2
ahpC 2726600 c.408T>C synonymous_variant 0.13
ahpC 2726612 c.420C>G synonymous_variant 0.16
ahpC 2726638 p.Ala149Val missense_variant 0.2
ahpC 2726645 c.453C>G synonymous_variant 0.21
ahpC 2726657 c.465A>C synonymous_variant 0.19
ahpC 2726669 p.Asp159Glu missense_variant 0.16
ahpC 2726672 c.480G>A synonymous_variant 0.17
ahpC 2726681 c.489A>G synonymous_variant 0.24
ahpC 2726687 c.495C>G synonymous_variant 0.23
ahpC 2726693 c.501C>G synonymous_variant 0.23
ahpC 2726696 c.504C>G synonymous_variant 0.24
ahpC 2726717 c.525A>G synonymous_variant 0.2
ahpC 2726735 c.543C>T synonymous_variant 0.15
folC 2746238 p.Pro454Gln missense_variant 0.12
folC 2747032 c.567A>C synonymous_variant 0.17
folC 2747040 p.Ile187Val missense_variant 0.18
folC 2747059 c.540T>C synonymous_variant 0.2
folC 2747065 c.534C>G synonymous_variant 0.24
folC 2747302 c.297A>G synonymous_variant 0.15
folC 2747317 c.282C>G synonymous_variant 0.14
folC 2747355 p.Val82Ile missense_variant 0.21
folC 2747359 c.240C>G synonymous_variant 0.22
folC 2747362 c.237G>C synonymous_variant 0.18
folC 2747394 p.Ile69Val missense_variant 0.14
folC 2747395 c.204T>C synonymous_variant 0.14
folC 2747401 c.198G>C synonymous_variant 0.15
Rv2752c 3064995 c.1197C>G synonymous_variant 0.18
Rv2752c 3064998 c.1194A>G synonymous_variant 0.19
Rv2752c 3065018 p.Asn392His missense_variant 0.19
Rv2752c 3065028 c.1164G>C synonymous_variant 0.17
Rv2752c 3065031 c.1161G>C synonymous_variant 0.19
Rv2752c 3065040 c.1152C>G synonymous_variant 0.19
Rv2752c 3065048 c.1144C>T synonymous_variant 0.24
Rv2752c 3065993 p.Val67Ile missense_variant 0.12
Rv2752c 3066024 c.168T>C synonymous_variant 0.14
thyX 3067284 p.Ala221Asp missense_variant 0.12
thyX 3067325 c.621A>G synonymous_variant 0.15
thyX 3067355 c.591A>C synonymous_variant 0.17
thyX 3067376 c.570G>C synonymous_variant 0.15
thyX 3067532 c.414C>T synonymous_variant 0.12
thyX 3067610 p.Lys112Asn missense_variant 0.12
thyX 3067613 c.333G>A synonymous_variant 0.15
thyX 3067619 c.327A>C synonymous_variant 0.27
thyX 3067640 c.306G>C synonymous_variant 0.19
thyX 3067643 c.303C>T synonymous_variant 0.17
thyX 3067652 c.294T>C synonymous_variant 0.2
thyX 3067661 c.285C>G synonymous_variant 0.23
thyX 3067682 c.264G>C synonymous_variant 0.21
thyX 3067685 c.261A>G synonymous_variant 0.19
thyX 3067688 c.258G>C synonymous_variant 0.18
thyX 3067694 c.252G>C synonymous_variant 0.2
thyX 3067718 c.228C>G synonymous_variant 0.14
thyA 3073953 c.519T>C synonymous_variant 0.22
thyA 3073977 c.495A>G synonymous_variant 0.14
thyA 3073989 c.483T>C synonymous_variant 0.19
thyA 3074001 c.471C>G synonymous_variant 0.18
thyA 3074004 c.468T>C synonymous_variant 0.18
thyA 3074010 c.462C>G synonymous_variant 0.14
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiD 3339040 c.-78T>C upstream_gene_variant 1.0
fprA 3473809 c.-198G>C upstream_gene_variant 0.31
fprA 3473812 c.-195G>A upstream_gene_variant 0.28
fprA 3473836 c.-171C>A upstream_gene_variant 0.26
fprA 3473843 c.-164C>G upstream_gene_variant 0.15
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474942 c.936G>A synonymous_variant 0.17
fprA 3474948 c.942A>G synonymous_variant 0.18
fprA 3474950 p.Ala315Val missense_variant 0.18
fprA 3474960 c.954C>G synonymous_variant 0.18
fprA 3474966 c.960G>C synonymous_variant 0.19
fprA 3474984 c.978G>C synonymous_variant 0.17
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
fbiA 3640347 c.-196A>G upstream_gene_variant 0.16
fbiA 3640349 c.-194A>G upstream_gene_variant 0.13
fbiA 3640350 c.-193C>T upstream_gene_variant 0.13
fbiA 3640365 c.-178C>G upstream_gene_variant 0.15
rpoA 3877507 p.Gly334Ala missense_variant 0.15
rpoA 3877515 c.993G>C synonymous_variant 0.24
rpoA 3877542 c.966C>T synonymous_variant 0.33
rpoA 3877553 p.Glu319Gln missense_variant 0.36
rpoA 3877557 c.951C>G synonymous_variant 0.35
rpoA 3877587 c.921A>G synonymous_variant 0.25
rpoA 3877613 p.Ile299Val missense_variant 0.21
rpoA 3877704 c.804G>T synonymous_variant 0.17
rpoA 3877743 c.765T>C synonymous_variant 0.21
rpoA 3877764 c.744C>G synonymous_variant 0.18
rpoA 3877770 c.738A>G synonymous_variant 0.17
rpoA 3877776 c.732T>C synonymous_variant 0.17
rpoA 3877782 c.726T>C synonymous_variant 0.17
rpoA 3877818 c.690A>G synonymous_variant 0.24
rpoA 3877839 c.669G>C synonymous_variant 0.18
rpoA 3877857 c.651G>A synonymous_variant 0.16
rpoA 3877962 c.546G>T synonymous_variant 0.14
rpoA 3877986 c.522G>C synonymous_variant 0.15
rpoA 3877989 c.519A>G synonymous_variant 0.15
rpoA 3878001 c.507A>G synonymous_variant 0.19
rpoA 3878022 c.486T>C synonymous_variant 0.13
rpoA 3878082 c.426T>C synonymous_variant 0.13
rpoA 3878118 c.390T>C synonymous_variant 0.2
rpoA 3878346 c.162T>C synonymous_variant 0.13
rpoA 3878376 c.132G>C synonymous_variant 0.16
rpoA 3878385 c.123C>G synonymous_variant 0.15
rpoA 3878391 c.117T>C synonymous_variant 0.15
rpoA 3878396 c.112C>T synonymous_variant 0.14
rpoA 3878436 c.72A>G synonymous_variant 0.21
rpoA 3878442 c.66G>C synonymous_variant 0.24
rpoA 3878454 c.54A>C synonymous_variant 0.25
rpoA 3878472 p.Asp12Glu missense_variant 0.21
rpoA 3878478 c.30C>G synonymous_variant 0.22
rpoA 3878490 c.18C>A synonymous_variant 0.21
rpoA 3878496 c.12A>T synonymous_variant 0.23
rpoA 3878672 c.-165A>T upstream_gene_variant 0.2
rpoA 3878698 c.-191A>G upstream_gene_variant 0.23
rpoA 3878701 c.-194C>G upstream_gene_variant 0.22
ddn 3986648 c.-196C>G upstream_gene_variant 0.18
ddn 3986655 c.-189A>T upstream_gene_variant 0.14
ddn 3986660 c.-184C>T upstream_gene_variant 0.14
ddn 3986665 c.-179G>C upstream_gene_variant 0.14
ddn 3986667 c.-177C>A upstream_gene_variant 0.14
clpC1 4038317 c.2388G>C synonymous_variant 0.16
clpC1 4038347 c.2358G>C synonymous_variant 0.14
clpC1 4038368 c.2337T>C synonymous_variant 0.14
clpC1 4038498 p.Ser736Thr missense_variant 0.14
clpC1 4038536 c.2169C>T synonymous_variant 0.13
clpC1 4038695 c.2010C>G synonymous_variant 0.16
clpC1 4038701 c.2004G>C synonymous_variant 0.13
clpC1 4038704 c.2001T>C synonymous_variant 0.13
clpC1 4038740 c.1965G>C synonymous_variant 0.19
clpC1 4038773 c.1932T>C synonymous_variant 0.3
clpC1 4038782 c.1923G>C synonymous_variant 0.46
clpC1 4038790 c.1915C>T synonymous_variant 0.42
clpC1 4038812 c.1893T>C synonymous_variant 0.36
clpC1 4038815 c.1890G>T synonymous_variant 0.34
clpC1 4038851 c.1854G>A synonymous_variant 0.25
clpC1 4038878 c.1827A>G synonymous_variant 0.64
clpC1 4038908 c.1797C>G synonymous_variant 0.38
clpC1 4038914 c.1791G>C synonymous_variant 0.33
clpC1 4038923 c.1782A>G synonymous_variant 0.29
clpC1 4038932 c.1773G>C synonymous_variant 0.25
clpC1 4038953 c.1752A>G synonymous_variant 0.17
clpC1 4038965 c.1740T>C synonymous_variant 0.16
clpC1 4038971 c.1734T>C synonymous_variant 0.16
clpC1 4038974 c.1731T>C synonymous_variant 0.17
clpC1 4038989 c.1716T>C synonymous_variant 0.18
clpC1 4038997 c.1708T>C synonymous_variant 0.18
clpC1 4039022 c.1683A>G synonymous_variant 0.16
clpC1 4039025 c.1680C>T synonymous_variant 0.82
clpC1 4039226 c.1479T>C synonymous_variant 0.17
clpC1 4039268 c.1437C>G synonymous_variant 0.16
clpC1 4039274 c.1431G>C synonymous_variant 0.15
clpC1 4039364 c.1341C>G synonymous_variant 0.16
clpC1 4039388 c.1317C>A synonymous_variant 0.26
clpC1 4039391 c.1314T>G synonymous_variant 0.26
clpC1 4039409 c.1296T>C synonymous_variant 0.23
clpC1 4039412 c.1293T>G synonymous_variant 0.23
clpC1 4039424 c.1281G>A synonymous_variant 0.3
clpC1 4039430 c.1275T>C synonymous_variant 0.26
clpC1 4039442 c.1263A>G synonymous_variant 0.16
clpC1 4039448 c.1257A>G synonymous_variant 0.15
clpC1 4039517 c.1188C>G synonymous_variant 0.15
clpC1 4039526 c.1179G>C synonymous_variant 0.16
clpC1 4039562 c.1143C>G synonymous_variant 0.15
clpC1 4039565 c.1140G>C synonymous_variant 0.22
clpC1 4039576 p.Ala377Ser missense_variant 0.23
clpC1 4039577 c.1128T>C synonymous_variant 0.23
clpC1 4039586 c.1119G>C synonymous_variant 0.19
clpC1 4039610 c.1095G>C synonymous_variant 0.2
clpC1 4039616 c.1089G>C synonymous_variant 0.17
clpC1 4039622 c.1083C>G synonymous_variant 0.19
clpC1 4039682 c.1023C>G synonymous_variant 0.14
clpC1 4039685 c.1020C>T synonymous_variant 0.21
clpC1 4039724 c.981A>G synonymous_variant 0.26
clpC1 4039733 c.972G>A synonymous_variant 0.15
clpC1 4039831 c.874T>C synonymous_variant 0.15
clpC1 4039832 c.873C>G synonymous_variant 0.18
clpC1 4039850 c.855T>C synonymous_variant 0.28
clpC1 4039865 c.840T>C synonymous_variant 0.24
clpC1 4039898 c.807C>G synonymous_variant 0.27
clpC1 4039904 c.801A>G synonymous_variant 0.22
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.17
clpC1 4039931 c.774T>C synonymous_variant 0.19
clpC1 4039946 c.759A>T synonymous_variant 0.2
clpC1 4039952 c.753T>C synonymous_variant 0.14
clpC1 4040105 c.600C>G synonymous_variant 0.14
clpC1 4040354 c.351A>G synonymous_variant 0.14
clpC1 4040363 c.342A>C synonymous_variant 0.14
clpC1 4040369 c.336C>G synonymous_variant 0.14
clpC1 4040411 c.294T>C synonymous_variant 0.14
clpC1 4040444 c.261C>G synonymous_variant 0.16
clpC1 4040522 c.183T>C synonymous_variant 0.15
clpC1 4040528 c.177G>C synonymous_variant 0.15
clpC1 4040644 c.61A>C synonymous_variant 0.19
clpC1 4040654 c.51G>A synonymous_variant 0.26
clpC1 4040657 c.48T>G synonymous_variant 0.25
clpC1 4040662 c.43C>T synonymous_variant 0.27
clpC1 4040699 c.6C>T synonymous_variant 0.17
panD 4044162 c.120A>G synonymous_variant 0.14
panD 4044165 c.117G>C synonymous_variant 0.18
panD 4044188 c.94T>C synonymous_variant 0.19
embC 4240657 c.795G>C synonymous_variant 0.15
embC 4240780 c.918T>C synonymous_variant 0.17
embC 4240783 c.921G>C synonymous_variant 0.19
embC 4240789 c.927T>C synonymous_variant 0.22
embC 4240819 c.957A>G synonymous_variant 0.21
embC 4240825 c.963G>A synonymous_variant 0.21
embC 4240831 c.969T>G synonymous_variant 0.23
embC 4240867 c.1005T>G synonymous_variant 0.19
embC 4240870 c.1008T>C synonymous_variant 0.18
embC 4240879 c.1017G>C synonymous_variant 0.19
embC 4240880 p.Ala340Thr missense_variant 0.19
embC 4240885 c.1023T>C synonymous_variant 0.18
embC 4240897 c.1035C>G synonymous_variant 0.14
embC 4241137 c.1275G>C synonymous_variant 0.15
embC 4241443 c.1581C>G synonymous_variant 0.19
embC 4241449 c.1587C>G synonymous_variant 0.18
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
embA 4245083 c.1851A>C synonymous_variant 0.15
embA 4245089 c.1857G>C synonymous_variant 0.14
embA 4245092 c.1860C>G synonymous_variant 0.13
embA 4245101 c.1869G>C synonymous_variant 0.14
embB 4245848 c.-666C>G upstream_gene_variant 0.17
embA 4245885 p.Asp885Thr missense_variant 0.17
embA 4245892 p.Ile887Thr missense_variant 0.19
embB 4245905 c.-609C>G upstream_gene_variant 0.15
embA 4246041 p.Asp937Asn missense_variant 0.14
embB 4246064 c.-450T>C upstream_gene_variant 0.14
embB 4246373 c.-141T>C upstream_gene_variant 0.13
embB 4247326 c.813A>G synonymous_variant 0.14
embB 4247338 c.825C>G synonymous_variant 0.13
embB 4247348 p.Thr279Ala missense_variant 0.15
embB 4247437 c.924A>G synonymous_variant 0.17
embB 4247440 c.927C>G synonymous_variant 0.17
embB 4247464 c.951C>G synonymous_variant 0.17
embB 4247470 c.957T>C synonymous_variant 0.17
embB 4247491 c.978G>C synonymous_variant 0.19
embB 4247497 c.984T>C synonymous_variant 0.14
embB 4247500 c.987C>G synonymous_variant 0.14
embB 4247512 c.999T>C synonymous_variant 0.16
embB 4248097 c.1584C>G synonymous_variant 0.14
embB 4248118 c.1605T>C synonymous_variant 0.3
embB 4248127 c.1614G>C synonymous_variant 0.25
embB 4248133 c.1620C>G synonymous_variant 0.25
embB 4248142 c.1629T>C synonymous_variant 0.23
embB 4248143 c.1630T>C synonymous_variant 0.23
embB 4248157 c.1644A>G synonymous_variant 0.19
embB 4248206 p.Ser565Gly missense_variant 0.14
embB 4248220 c.1707A>G synonymous_variant 0.2
embB 4248241 c.1728C>T synonymous_variant 0.21
embB 4248265 c.1752C>T synonymous_variant 0.15
embB 4248266 c.1753C>T synonymous_variant 0.15
embB 4248902 p.Thr797Pro missense_variant 1.0
embB 4249469 p.Leu986Met missense_variant 0.13
embB 4249483 c.2970C>G synonymous_variant 0.16
embB 4249486 c.2973T>G synonymous_variant 0.16
embB 4249487 c.2974T>C synonymous_variant 0.16
embB 4249498 c.2985G>C synonymous_variant 0.21
embB 4249521 p.Ala1003Val missense_variant 0.18
embB 4249525 c.3012T>C synonymous_variant 0.15
embB 4249532 p.Ala1007Thr missense_variant 0.12
aftB 4267647 p.Asp397Gly missense_variant 1.0
aftB 4268117 c.720G>C synonymous_variant 0.14
ubiA 4269243 p.His197Gln missense_variant 0.19
ubiA 4269271 p.Val188Ala missense_variant 0.17
ethA 4328471 c.-998A>G upstream_gene_variant 0.23
ethA 4328473 c.-1000G>C upstream_gene_variant 0.21
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0