EBG00000313339 - n.2000A>G


Drug resistance types
14 Sensitive 24 RR-TB 137 HR-TB 59 MDR-TB 24 Pre-XDR-TB 0 XDR-TB 188 Other
lineage Counts
lineage Count
130
lineage4.3.3 8
La1.2 3
lineage4.6.1.1 1
lineage4.9.1 1
lineage4.6.1.2 1
lineage4.1.2.1.1 1
lineage4.3.2 3
lineage1.1.3.2 1
lineage2.2.1 39
lineage2.2 8
lineage4.3.4.2.1 4
lineage1.1.2 2
lineage4.6.2.2 5
lineage5.2 4
lineage4.6.4 2
lineage4.7 4
lineage4.1.2.1 27
lineage4.1 2
lineage4.1.1 3
lineage4.8;lineage4.1 2
lineage4.8 13
lineage4.1.3 2
lineage6.2.3 1
lineage6.1.1 2
lineage6.3.1 1
lineage2.2.1.1 8
lineage3.1.2.2;lineage3.1.2.1 1
lineage2.2.2 2
lineage3 9
lineage4.8;lineage4.3.3 3
lineage4.3.2.1 1
lineage4 11
La3 1
lineage4.9 59
lineage4.4.1.1 4
lineage3.1 5
lineage2 3
lineage4.5 2
lineage1.2.1.2 1
lineage4.3.4.1 6
lineage1.2.1.2.1 1
lineage4.4.2 1
lineage4.4 1
La1.4 1
lineage2.1 2
La1.8.1 5
La1.7.1 2
lineage3;lineage2.2.1 2
lineage1.1.1 1
lineage2.2.1;La3 1
lineage4.9;La3 1
lineage4.2;La1.7 1
lineage6.3;lineage4.9;lineage2.1 1
lineage4.1.1.1 1
lineage4.9;lineage4.6.3 1
lineage6.3;lineage2.2.1 1
lineage4;lineage3;lineage2.2.1 1
lineage4.1.1.3 6
lineage3;lineage2.1 1
lineage4.9;lineage3.1.1 1
lineage4.3 1
lineage3.1.2.1 1
lineage1.2.1.1 1
lineage4.3.4.2 3
lineage4;lineage1.1.2 1
lineage4.8;La3 2
lineage4.2.2.2 2
lineage4;lineage3.1.2.1 1
lineage4;lineage1.1 1
lineage1.1.3.1 1
lineage3.1.2.2 1
lineage4.6.5 1
lineage1.1 1
lineage4.2.1.1 1
La2 1
lineage4.2.1 2
lineage4.9;lineage4.1 1
lineage4.1.2 1
lineage4.3.4 2
lineage4.4.1.2 1
lineage1.2.2.2 1
lineage3.1.2 1
spoligotype Counts
spoligotype Count
None 446
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4810741 HR-TB None
ERR5865589 MDR-TB lineage4.3.3 None
ERR4811142 MDR-TB None
ERR5336148 Other None
ERR4811022 HR-TB None
ERR4811105 HR-TB None
ERR702404 HR-TB None
ERR6198317 Other La1.2 None
ERR6358755 Other lineage4.6.1.1 None
ERR6358837 HR-TB None
ERR6359045 HR-TB None
ERR702406 HR-TB None
ERR245758 Other lineage4.9.1 None
ERR736865 HR-TB None
ERR736839 Other None
ERR736874 HR-TB None
ERR736867 HR-TB None
ERR2124083 HR-TB lineage4.6.1.2 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR9117709 HR-TB None
ERR772255 MDR-TB lineage4.3.2 None
ERR7821126 Sensitive lineage1.1.3.2 None
ERR7821163 Other lineage2.2.1 None
ERR7911670 Pre-XDR-TB lineage2.2 None
ERR176549 Other lineage4.3.4.2.1 None
ERR8976043 HR-TB None
ERR9117721 HR-TB lineage1.1.2 None
ERR9117805 Other lineage4.3.2 None
ERR9119502 MDR-TB lineage4.6.2.2 None
ERR9119500 MDR-TB lineage5.2 None
ERR9119499 MDR-TB lineage5.2 None
ERR9119508 MDR-TB lineage4.6.4 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR9786507 Sensitive lineage4.7 None
ERR9786421 Other lineage4.1.2.1 None
ERR9786440 Other lineage4.1 None
ERR9786515 Other lineage4.1.2.1 None
ERR9786617 Other lineage4.1.1 None
ERR9786525 Other lineage4.8;lineage4.1 None
ERR9786526 Other lineage4.8;lineage4.1 None
ERR9786569 Other lineage4.8 None
ERR9786604 Other None
ERR9786671 Other None
ERR9786601 Other lineage4.1.2.1 None
ERR9786642 Other lineage4.1.2.1 None
ERR9786645 Other lineage4.6.2.2 None
ERR9786611 HR-TB lineage4.1.3 None
ERR9786694 Other lineage4.1.2.1 None
ERR9786682 Other lineage4.1.2.1 None
ERR9787061 Sensitive lineage6.2.3 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR9786843 Other None
ERR9787014 Other lineage6.1.1 None
ERR987707 MDR-TB lineage4.7 None
ERR9787139 Other lineage6.3.1 None
ERR983238 MDR-TB lineage2.2.1.1 None
ERR9787197 Other None
ERR987729 HR-TB lineage3.1.2.2;lineage3.1.2.1 None
ERR987722 HR-TB None
ERR9992784 Pre-XDR-TB lineage2.2.2 None
ERR990545 Other lineage3 None
SRR1049676 MDR-TB lineage4.8;lineage4.3.3 None
SRR069978 Pre-XDR-TB lineage2.2.2 None
SRR11349147 RR-TB lineage4.3.2.1 None
SRR1049677 MDR-TB lineage4.8;lineage4.3.3 None
SRR1062920 MDR-TB lineage4.8;lineage4.3.3 None
SRR1163221 HR-TB lineage4.1.2.1 None
SRR1162740 Other lineage4.1.2.1 None
SRR1162864 HR-TB lineage4.1.2.1 None
SRR1165423 Other lineage4.1.2.1 None
SRR1165506 Other lineage4.1.2.1 None
SRR1166821 HR-TB lineage4.1.2.1 None
SRR1165584 Other lineage4.1.2.1 None
SRR1167384 Other lineage4 None
SRR1167055 Other lineage4.1.2.1 None
SRR1169249 Other La3 None
SRR1169194 Other None
SRR1172857 MDR-TB None
SRR1172146 Sensitive lineage4.9 None
SRR1172310 HR-TB None
SRR1172728 MDR-TB None
SRR1172844 MDR-TB lineage4.4.1.1 None
SRR1169306 Other None
SRR1172214 HR-TB lineage4.9 None
SRR1172234 Other None
SRR1172817 HR-TB None
SRR1172951 Other None
SRR1173153 HR-TB None
SRR1172987 HR-TB lineage4.9 None
SRR1173118 Other None
SRR1173185 HR-TB lineage4.9 None
SRR1173218 Pre-XDR-TB lineage4.3.3 None
SRR1173310 MDR-TB None
SRR1173384 Other lineage4 None
SRR1173363 HR-TB None
SRR1173400 Other None
SRR1173450 RR-TB lineage4.9 None
SRR1173562 HR-TB lineage4 None
SRR1173453 Other lineage4.4.1.1 None
SRR1173484 Other lineage4 None
SRR1173633 HR-TB lineage4.9 None
SRR1173706 Other lineage4.9 None
SRR1173629 Other None
SRR1173788 Other None
SRR1173767 HR-TB lineage4.4.1.1 None
SRR1173778 Other None
SRR1174897 HR-TB None
SRR1175472 MDR-TB lineage4 None
SRR1175049 RR-TB None
SRR1175074 MDR-TB None
SRR1175090 Other lineage4.9 None
SRR1175473 Other lineage4.9 None
SRR1175474 HR-TB lineage4.9 None
SRR1181251 Other lineage2.2.1 None
SRR1175491 MDR-TB lineage4 None
SRR1180137 Other lineage2.2.1 None
SRR1180147 Other lineage2.2.1.1 None
SRR1181020 Other lineage2.2.1 None
SRR1181091 Other lineage2.2.1.1 None
SRR1180172 Other lineage2.2.1 None
SRR1181289 Other lineage2.2.1 None
SRR1183049 Other lineage2.2 None
SRR1184329 MDR-TB lineage4.9 None
SRR1183144 Other lineage2.2.1 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR1184312 HR-TB lineage2.2.1 None
SRR1183106 Other lineage2.2.1.1 None
SRR1184024 Other lineage2.2.1.1 None
SRR1184294 HR-TB None
SRR1184346 HR-TB lineage3.1 None
SRR1184381 MDR-TB None
SRR1184372 MDR-TB None
SRR1196478 MDR-TB lineage4.9 None
SRR1184388 Other None
SRR1184380 HR-TB None
SRR1196571 Pre-XDR-TB lineage4.3.3 None
SRR1196474 HR-TB lineage3.1 None
SRR1196546 HR-TB None
SRR1196566 HR-TB None
SRR1196494 MDR-TB None
SRR1196768 MDR-TB None
SRR1196677 HR-TB lineage2 None
SRR13423544 Other lineage4.5 None
SRR12006550 Other lineage1.2.1.2 None
SRR12416829 MDR-TB lineage2.2.1 None
SRR12416840 MDR-TB lineage4.9 None
SRR12416824 HR-TB None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR12142341 HR-TB None
SRR13861146 Sensitive lineage4.9 None
SRR13423649 Sensitive lineage2.2.1 None
SRR13837484 Other lineage4.9 None
SRR13837695 HR-TB lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR13837642 RR-TB lineage4.9 None
SRR13837699 Sensitive lineage4.9 None
SRR13861235 HR-TB lineage4.9 None
SRR13861163 Sensitive lineage4.9 None
SRR13861386 HR-TB lineage4.9 None
SRR13861261 Sensitive lineage4.9 None
SRR13861329 Other lineage4.9 None
SRR13861372 Other lineage4.9 None
SRR13861399 Other lineage4.9 None
SRR13861396 HR-TB lineage4.9 None
SRR13861413 Sensitive lineage4.9 None
SRR13861400 Other lineage4.9 None
SRR13861439 RR-TB lineage4.9 None
SRR13861415 Other lineage4.9 None
SRR13861447 RR-TB lineage4.9 None
SRR13861510 Other lineage4.9 None
SRR13861556 Other lineage4.9 None
SRR13861573 Other lineage4.9 None
SRR15600376 HR-TB lineage2.2.1.1 None
SRR13861629 RR-TB lineage4.9 None
SRR1510066 Other lineage1.2.1.2.1 None
SRR15368973 Other None
SRR13861575 Other lineage4.9 None
SRR13861646 Other lineage4.9 None
SRR15316595 RR-TB lineage4.4.2 None
SRR16156832 RR-TB None
SRR16156697 MDR-TB lineage2.2.1 None
SRR17832802 HR-TB lineage3 None
SRR1640750 HR-TB None
SRR16627752 RR-TB lineage4.4 None
SRR16278274 Other La1.4 None
SRR1710057 Other lineage2.1 None
SRR1791696 Other La1.8.1 None
SRR19303820 RR-TB lineage4.8 None
SRR18910194 HR-TB lineage2.2 None
SRR18213713 HR-TB lineage4.5 None
SRR19303884 HR-TB None
SRR21469201 Other La1.7.1 None
SRR25827682 Other None
SRR19304036 HR-TB None
SRR20969677 HR-TB lineage2 None
SRR25827856 MDR-TB lineage3;lineage2.2.1 None
SRR21658550 Other lineage1.1.1 None
ERR11138607 Pre-XDR-TB lineage2.2.1 None
SRR21727760 Other lineage2.2.1 None
SRR22424778 RR-TB lineage2.2.1.1 None
ERR11081257 Other lineage4.8 None
ERR11081258 Other lineage4.8 None
SRR26159043 Other lineage4.9 None
SRR26937071 MDR-TB lineage2.2.1;La3 None
SRR26399973 Other lineage4.9;La3 None
SRR21732980 Other lineage4.3.3 None
SRR26937107 MDR-TB lineage2.2.1 None
SRR23961559 Other lineage4.2;La1.7 None
SRR23961558 Other lineage6.3;lineage4.9;lineage2.1 None
SRR28119741 Pre-XDR-TB lineage2.2.1 None
SRR23961549 Other La1.2 None
SRR25827507 MDR-TB lineage4.1.1.1 None
SRR26159047 Other lineage4.9;lineage4.6.3 None
ERR1035294 MDR-TB lineage4.1.2.1 br
SRR28119811 Other lineage6.3;lineage2.2.1 None
SRR25827497 Pre-XDR-TB lineage3;lineage2.2.1 None
SRR25827605 Pre-XDR-TB lineage4;lineage3;lineage2.2.1 None
SRR3675464 HR-TB lineage4.1 None
ERR4813861 Other lineage4.3.3 None
ERR1035297 MDR-TB lineage4.3.4.1 br
SRR3675465 HR-TB None
SRR6325445 HR-TB None
ERR1035239 HR-TB None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR176793 Other lineage4.1.1 None
ERR161034 Other lineage4.3.4.2.1 None
ERR4814352 HR-TB lineage2.2.1 None
ERR161033 HR-TB None
SRR3675482 HR-TB None
ERR4815778 Sensitive lineage4.9 None
SRR3675486 HR-TB None
SRR3619764 Pre-XDR-TB lineage2.2 None
SRR3416776 Other lineage2.1 None
SRR3601585 Pre-XDR-TB lineage2.2 None
ERR4814536 MDR-TB lineage3;lineage2.1 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
SRR3675221 HR-TB None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
ERR4814643 Other lineage4.1.2.1 None
ERR171142 Other lineage4.9;lineage3.1.1 None
SRR3675383 HR-TB None
SRR3675311 Other None
SRR3675232 Other lineage4.1.2.1 None
ERR176568 Other lineage4.3 None
ERR176643 HR-TB None
ERR4815752 Other lineage4.9 None
ERR4815022 Other lineage3.1.2.1 None
ERR176740 HR-TB None
ERR4816999 Other None
ERR176751 HR-TB None
SRR3675510 Other None
ERR212001 HR-TB None
ERR2027209 MDR-TB lineage1.2.1.1 None
ERR2027263 Other lineage4 None
ERR2027290 RR-TB lineage3.1 None
ERR4817037 Other lineage4.9 None
ERR1034902 Pre-XDR-TB lineage4.3.4.2 pt
ERR212033 HR-TB None
SRR3675572 Other None
SRR3675574 HR-TB None
SRR3675571 HR-TB None
ERR4816466 HR-TB None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR1034907 Pre-XDR-TB lineage4.3.4.1 pt
SRR3742665 HR-TB None
ERR4816559 MDR-TB lineage4.4.1.1 None
ERR4816585 Other lineage2.2 None
ERR4817692 HR-TB lineage4;lineage1.1.2 None
ERR4816656 HR-TB None
ERR4817893 Other lineage4.8;La3 None
ERR553132 MDR-TB lineage4.1.2.1 None
ERR4817896 HR-TB lineage2.2.1 None
ERR3275196 Other lineage2.2.1 nl
SRR7496472 Other None
ERR4817915 RR-TB lineage4.9 None
ERR234659 HR-TB None
ERR4820854 Other lineage4.1.2.1 None
ERR2229143 Other lineage4.1.1 None
ERR4818929 HR-TB None
ERR2513470 Other lineage4.2.2.2 None
ERR2509673 Other lineage2.2.1 None
ERR2514327 HR-TB lineage4.8 None
ERR4819377 Other lineage4;lineage3.1.2.1 None
ERR4819322 Other lineage4;lineage1.1 None
ERR4820742 Other lineage4.3.4.2.1 None
SAMN02414850 Other lineage4.1.2.1 None
ERR4819781 Other lineage2.2.1 None
SRR5341333 HR-TB None
ERR4819864 RR-TB lineage1.1.3.1 None
ERR4819932 Other lineage4.7 None
SRR5341332 Pre-XDR-TB lineage3 None
ERR2514692 Other None
SRR5341302 HR-TB None
SRR5341470 HR-TB None
ERR2515228 Other lineage2.2.1 None
ERR2446563 Other lineage2.2.1 nl
ERR2693239 HR-TB None
ERR4821053 Other lineage3 None
SRR6046133 HR-TB None
SRR6045555 HR-TB None
SRR6045843 Other lineage4.2.2.2 None
ERR278594 HR-TB None
SRR6045526 HR-TB None
SRR6044769 Other lineage1.1.2 None
SRR6044790 HR-TB None
SRR6045952 HR-TB None
SRR6044841 Other lineage4.9 None
SRR6044855 Other lineage4.9 None
SRR6045909 Other lineage4.8 None
SRR6046066 HR-TB None
SRR6045327 HR-TB None
SRR6046225 HR-TB None
SRR6325442 HR-TB None
ERR1213875 Sensitive lineage4.3.3 de
SRR6046397 Other None
ERR1213930 Other lineage4.3.2 pe
SRR6325448 HR-TB None
ERR2815606 Other La1.7.1 None
SRR6046440 Other lineage3.1.2.2 None
SRR6046514 HR-TB None
SRR6325444 HR-TB None
SRR6046540 HR-TB None
SRR6046848 Other lineage4.6.5 None
SRR6046815 Other lineage3 None
SRR6325447 HR-TB None
ERR4872093 MDR-TB lineage5.2 None
SRR6079962 HR-TB lineage2.2.1.1 None
ERR3077978 Other lineage1.1 None
ERR502470 RR-TB lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6397654 HR-TB lineage4.1.2.1 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4872096 MDR-TB lineage4.6.2.2 None
ERR4872102 MDR-TB lineage4.6.4 None
ERR4872094 MDR-TB lineage5.2 None
ERR11466146 Other lineage4.3.4.2.1 None
ERR4831546 HR-TB lineage2.2 None
ERR4831545 Pre-XDR-TB lineage2.2 None
SRR6982365 Other lineage2.2.1 None
SRR6831950 Other lineage4.3.3 None
SRR6785227 Other lineage2.2.1 None
SRR6785281 Other lineage4.2.1.1 None
SRR6785413 Other lineage2.2.1 None
SRR6785527 Sensitive lineage2.2.1 None
ERR294248 HR-TB None
SRR6789626 Other None
ERR323034 HR-TB lineage3.1 None
ERR294266 HR-TB None
ERR5087596 Other La1.8.1 None
ERR502524 HR-TB La2 None
ERR502532 HR-TB None
ERR323036 HR-TB None
ERR502908 HR-TB lineage2.2.1 None
ERR5311099 HR-TB None
ERR5311077 RR-TB La1.8.1 None
SRR7131123 Other lineage4.8 None
ERR5311081 HR-TB None
SRR7131023 Other lineage4.1.2.1 None
ERR5311090 HR-TB None
ERR323038 HR-TB None
SRR7496509 Other None
SRR7496517 Other None
SRR9971333 MDR-TB lineage4.1.1.3 None
SRR7131216 Other lineage4.1.2.1 None
SRR7535086 Other None
SRR7645901 MDR-TB lineage2.2.1 None
SRR7585435 Other lineage4.9 None
SRR7645899 RR-TB lineage2.2.1 None
SRR7645906 Other lineage2.2.1 None
SRR7645927 Other lineage4.8 None
SRR7755645 Pre-XDR-TB lineage2.2.1 None
SRR7645928 RR-TB lineage4.7 None
SRR7645971 Other lineage2.2.1 None
SRR7755655 Other lineage4.1.2.1 None
SRR7755649 MDR-TB lineage4.2.1 None
SRR7755688 Pre-XDR-TB lineage4.2.1 None
SRR9971122 MDR-TB lineage4.8 None
ERR323039 HR-TB None
ERR323041 HR-TB None
ERR036207 Other lineage4.9 None
ERR323055 HR-TB None
ERR323053 HR-TB None
ERR323054 HR-TB lineage3.1 None
ERR323063 HR-TB None
ERR11641184 Pre-XDR-TB lineage4.3.4.2 None
ERR323043 HR-TB None
ERR11466499 Other lineage4.3.4.1 None
ERR11465025 Other lineage4.1.1.3 None
ERR10796572 Other lineage4.3.4.1 None
ERR1023295 HR-TB lineage4.1.2.1 None
ERR1034647 MDR-TB lineage4.1.1.3 None
ERR11465024 Other lineage4.1.1.3 None
ERR1035157 Other lineage4.9 None
ERR10796560 MDR-TB lineage4.9;lineage4.1 None
ERR10796576 RR-TB lineage4.9 None
ERR10796571 Other lineage4.9 None
ERR10796589 Other lineage4.9 None
ERR10796626 Other lineage4.1.2 None
ERR10796591 MDR-TB lineage4.9 None
ERR10796597 Other lineage4 None
ERR10796618 Other lineage4.3.4.1 None
ERR10796598 RR-TB lineage4.9 None
ERR10796633 RR-TB lineage4.3.4 None
ERR10796629 Other lineage4 None
ERR10796631 Other lineage4.3.4 None
ERR10796635 Other lineage4 None
ERR1213867 Other lineage4.3.4.2 None
ERR126597 MDR-TB lineage4.4.1.2 None
ERR12015084 Other lineage4.8 None
ERR3470647 Other lineage3 None
ERR12015086 Other lineage4.8 None
ERR3283027 HR-TB None
ERR3283036 HR-TB None
ERR3283046 MDR-TB lineage4.9 None
ERR3283017 HR-TB None
ERR3283048 HR-TB lineage4.9 None
ERR3283051 Other lineage4.9 None
ERR3468488 RR-TB La1.8.1 None
ERR3468544 HR-TB None
ERR3797016 HR-TB None
ERR3797062 RR-TB lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
ERR3797036 HR-TB None
ERR3797065 MDR-TB lineage4 None
ERR3799304 Other lineage6.1.1 None
ERR3797069 Other None
ERR3797082 Other lineage4.9 None
ERR3797083 HR-TB None
ERR3804169 HR-TB lineage4.1.3 None
ERR3804155 Other lineage4.1.2.1 None
ERR4188350 HR-TB None
ERR4187652 Other lineage4.9 None
ERR4772225 Other La1.2 None
ERR4407452 Sensitive lineage3 None
ERR4407463 HR-TB None
ERR4798504 Other lineage3 None
ERR4797054 Pre-XDR-TB lineage2 None
ERR4797201 Other lineage1.2.2.2 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR12015085 Other lineage4.8 None
ERR4798648 HR-TB lineage3.1.2 None
ERR4799171 Pre-XDR-TB lineage4.8 None
ERR12015083 Other lineage4.8;La3 None
ERR4800341 Other lineage3 None
ERR4800527 MDR-TB lineage2.2.1 None