Run ID: SRR6785227
Sample name:
Date: 04-04-2023 15:38:33
Number of reads: 3529150
Percentage reads mapped: 83.75
Strain: lineage2.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 0.98 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 0.99 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpsL | 781687 | p.Lys43Arg | missense_variant | 0.85 | streptomycin |
rrs | 1472307 | n.462C>T | non_coding_transcript_exon_variant | 0.25 | streptomycin |
embB | 4247448 | p.His312Arg | missense_variant | 0.15 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6238 | c.999G>A | synonymous_variant | 0.13 |
gyrB | 6242 | p.Arg335Ser | missense_variant | 0.13 |
gyrB | 6250 | c.1011A>G | synonymous_variant | 0.14 |
gyrB | 6256 | c.1017G>A | synonymous_variant | 0.15 |
gyrB | 6280 | c.1041T>C | synonymous_variant | 0.15 |
gyrB | 6286 | c.1047T>C | synonymous_variant | 0.13 |
gyrB | 6289 | c.1050C>T | synonymous_variant | 0.12 |
gyrB | 6292 | c.1053G>C | synonymous_variant | 0.13 |
gyrA | 6307 | c.-995T>G | upstream_gene_variant | 0.15 |
gyrA | 6649 | c.-653T>C | upstream_gene_variant | 0.15 |
gyrA | 6655 | c.-647T>C | upstream_gene_variant | 0.15 |
gyrA | 6670 | c.-632G>C | upstream_gene_variant | 0.15 |
gyrA | 6673 | c.-629A>C | upstream_gene_variant | 0.15 |
gyrA | 6676 | c.-626T>G | upstream_gene_variant | 0.15 |
gyrA | 6700 | c.-602T>C | upstream_gene_variant | 0.18 |
gyrA | 6703 | c.-599G>C | upstream_gene_variant | 0.14 |
gyrA | 6709 | c.-593A>G | upstream_gene_variant | 0.14 |
gyrA | 6712 | c.-590G>C | upstream_gene_variant | 0.14 |
gyrA | 6728 | c.-574_-572delCTAinsTTG | upstream_gene_variant | 0.14 |
gyrA | 6742 | c.-560A>G | upstream_gene_variant | 0.15 |
gyrA | 6745 | c.-557T>G | upstream_gene_variant | 0.15 |
gyrA | 6751 | c.-551G>C | upstream_gene_variant | 0.14 |
gyrA | 6811 | c.-491C>T | upstream_gene_variant | 0.12 |
gyrA | 7186 | c.-116C>G | upstream_gene_variant | 0.13 |
gyrA | 7216 | c.-86G>C | upstream_gene_variant | 0.17 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491106 | c.324T>C | synonymous_variant | 0.13 |
fgd1 | 491130 | c.348C>G | synonymous_variant | 0.15 |
fgd1 | 491144 | p.Ala121Asp | missense_variant | 0.15 |
fgd1 | 491151 | c.369G>A | synonymous_variant | 0.15 |
fgd1 | 491173 | c.391C>A | synonymous_variant | 0.13 |
fgd1 | 491181 | c.399T>C | synonymous_variant | 0.13 |
fgd1 | 491191 | p.Gly137Arg | missense_variant | 0.13 |
fgd1 | 491232 | c.450T>C | synonymous_variant | 0.14 |
fgd1 | 491241 | p.Asp153Glu | missense_variant | 0.15 |
fgd1 | 491244 | c.462T>C | synonymous_variant | 0.14 |
fgd1 | 491259 | c.477T>C | synonymous_variant | 0.16 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.97 |
mshA | 575907 | p.Ala187Val | missense_variant | 0.89 |
ccsA | 620625 | p.Ile245Met | missense_variant | 0.99 |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.14 |
rpoB | 760223 | c.417T>C | synonymous_variant | 0.14 |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.15 |
rpoB | 760283 | c.477G>C | synonymous_variant | 0.14 |
rpoB | 760298 | c.492G>C | synonymous_variant | 0.15 |
rpoB | 760307 | c.501T>C | synonymous_variant | 0.13 |
rpoB | 760328 | c.522G>C | synonymous_variant | 0.13 |
rpoB | 760340 | c.534G>T | synonymous_variant | 0.13 |
rpoB | 760361 | c.555T>C | synonymous_variant | 0.14 |
rpoB | 760370 | c.564C>G | synonymous_variant | 0.14 |
rpoB | 760376 | p.Asp190Glu | missense_variant | 0.14 |
rpoB | 760381 | p.Thr192Met | missense_variant | 0.13 |
rpoB | 760406 | c.600G>C | synonymous_variant | 0.14 |
rpoB | 760412 | c.606C>G | synonymous_variant | 0.12 |
rpoB | 760481 | c.675G>C | synonymous_variant | 0.12 |
rpoB | 760611 | c.805T>C | synonymous_variant | 0.15 |
rpoB | 760634 | c.828T>C | synonymous_variant | 0.13 |
rpoB | 760646 | c.840C>G | synonymous_variant | 0.16 |
rpoB | 760655 | c.849A>G | synonymous_variant | 0.15 |
rpoB | 760661 | c.855A>C | synonymous_variant | 0.14 |
rpoB | 760670 | c.864G>C | synonymous_variant | 0.15 |
rpoB | 760674 | c.868T>C | synonymous_variant | 0.14 |
rpoB | 760679 | c.873A>G | synonymous_variant | 0.14 |
rpoB | 760683 | c.877T>C | synonymous_variant | 0.15 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.17 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.14 |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.13 |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.13 |
rpoB | 761306 | c.1500C>G | synonymous_variant | 0.14 |
rpoB | 762101 | c.2295C>G | synonymous_variant | 0.14 |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.15 |
rpoB | 762131 | c.2325C>G | synonymous_variant | 0.16 |
rpoB | 762140 | c.2334G>C | synonymous_variant | 0.14 |
rpoB | 762143 | c.2337T>C | synonymous_variant | 0.13 |
rpoB | 762149 | c.2343G>C | synonymous_variant | 0.15 |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.15 |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.16 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.17 |
rpoB | 762206 | c.2400C>G | synonymous_variant | 0.17 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.14 |
rpoB | 762246 | c.2440C>T | synonymous_variant | 0.14 |
rpoC | 762419 | c.-951C>G | upstream_gene_variant | 0.12 |
rpoC | 762434 | c.-936T>C | upstream_gene_variant | 0.15 |
rpoC | 762449 | c.-921C>A | upstream_gene_variant | 0.17 |
rpoC | 762467 | c.-903C>T | upstream_gene_variant | 0.18 |
rpoC | 762488 | c.-882G>C | upstream_gene_variant | 0.15 |
rpoB | 762490 | p.Val895Asp | missense_variant | 0.12 |
rpoC | 762509 | c.-861T>G | upstream_gene_variant | 0.13 |
rpoB | 762510 | p.Ala902Pro | missense_variant | 0.13 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.16 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.17 |
rpoC | 763013 | c.-357C>G | upstream_gene_variant | 0.17 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.17 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.99 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.19 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.22 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.22 |
rpoC | 763085 | c.-285C>G | upstream_gene_variant | 0.2 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.16 |
rpoC | 763136 | c.-234C>T | upstream_gene_variant | 0.14 |
rpoC | 763158 | c.-212C>T | upstream_gene_variant | 0.13 |
rpoC | 763441 | c.72C>T | synonymous_variant | 0.14 |
rpoC | 763444 | c.75T>C | synonymous_variant | 0.13 |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.2 |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.24 |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.23 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.2 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.23 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.23 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.22 |
rpoC | 763603 | c.234C>T | synonymous_variant | 0.21 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.22 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.18 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.17 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.17 |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.16 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.19 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.17 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.18 |
rpoC | 763741 | c.372C>T | synonymous_variant | 0.17 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.18 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.2 |
rpoC | 763774 | c.405G>C | synonymous_variant | 0.2 |
rpoC | 763807 | c.438T>C | synonymous_variant | 0.17 |
rpoC | 763816 | c.447C>G | synonymous_variant | 0.16 |
rpoC | 763987 | c.618C>T | synonymous_variant | 0.12 |
rpoC | 764026 | p.Leu219Phe | missense_variant | 0.13 |
rpoC | 764098 | c.729A>G | synonymous_variant | 0.14 |
rpoC | 764101 | c.732C>G | synonymous_variant | 0.13 |
rpoC | 764102 | p.Val245Ile | missense_variant | 0.13 |
rpoC | 764112 | p.Tyr248Phe | missense_variant | 0.13 |
rpoC | 764140 | c.771C>T | synonymous_variant | 0.18 |
rpoC | 764188 | c.819A>G | synonymous_variant | 0.17 |
rpoC | 764195 | p.Ser276Ile | missense_variant | 0.13 |
rpoC | 764203 | c.834G>C | synonymous_variant | 0.13 |
rpoC | 764206 | c.837T>C | synonymous_variant | 0.13 |
rpoC | 764215 | c.846A>G | synonymous_variant | 0.16 |
rpoC | 764236 | c.867G>A | synonymous_variant | 0.19 |
rpoC | 764248 | c.879C>G | synonymous_variant | 0.14 |
rpoC | 764405 | c.1036A>C | synonymous_variant | 0.13 |
rpoC | 764489 | c.1120C>T | synonymous_variant | 0.13 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.13 |
rpoC | 765383 | p.Met672Leu | missense_variant | 0.15 |
rpoC | 765404 | p.Leu679Val | missense_variant | 0.17 |
rpoC | 765409 | c.2040T>C | synonymous_variant | 0.19 |
rpoC | 765421 | c.2052C>G | synonymous_variant | 0.21 |
rpoC | 765478 | c.2109T>C | synonymous_variant | 0.17 |
rpoC | 765499 | c.2130C>G | synonymous_variant | 0.17 |
rpoC | 765529 | c.2160C>T | synonymous_variant | 0.15 |
rpoC | 765580 | c.2211G>C | synonymous_variant | 0.13 |
rpoC | 765613 | p.His748Gln | missense_variant | 0.18 |
rpoC | 765625 | c.2256C>G | synonymous_variant | 0.16 |
rpoC | 765631 | p.Asp754Glu | missense_variant | 0.14 |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.17 |
rpoC | 765734 | c.2365T>C | synonymous_variant | 0.17 |
rpoC | 765739 | c.2370G>T | synonymous_variant | 0.15 |
rpoC | 766645 | p.Glu1092Asp | missense_variant | 0.9 |
rpoC | 766765 | c.3396A>C | synonymous_variant | 0.15 |
rpoC | 766774 | c.3405T>C | synonymous_variant | 0.16 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 0.99 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 0.96 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781703 | c.144G>T | synonymous_variant | 0.12 |
rpsL | 781728 | c.169T>C | synonymous_variant | 0.14 |
rpsL | 781736 | c.177T>C | synonymous_variant | 0.13 |
rpsL | 781742 | c.183C>T | synonymous_variant | 0.13 |
rpsL | 781748 | c.189C>G | synonymous_variant | 0.13 |
rpsL | 781754 | c.195G>C | synonymous_variant | 0.16 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.15 |
rpsL | 781772 | c.213C>A | synonymous_variant | 0.15 |
rpsL | 781808 | c.249C>T | synonymous_variant | 0.14 |
rpsL | 781811 | c.252C>T | synonymous_variant | 0.15 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.15 |
rpsL | 781838 | c.279G>C | synonymous_variant | 0.16 |
rpsL | 781841 | c.282C>G | synonymous_variant | 0.15 |
rpsL | 781865 | c.306G>C | synonymous_variant | 0.14 |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.14 |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.14 |
rpsL | 781877 | c.318T>C | synonymous_variant | 0.14 |
rpsL | 781892 | c.333A>G | synonymous_variant | 0.15 |
rpsL | 781898 | c.339A>T | synonymous_variant | 0.14 |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.14 |
rplC | 800693 | c.-116A>G | upstream_gene_variant | 0.13 |
rplC | 800703 | c.-106T>C | upstream_gene_variant | 0.14 |
rplC | 800715 | c.-94A>C | upstream_gene_variant | 0.15 |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.15 |
rplC | 800723 | c.-86C>G | upstream_gene_variant | 0.16 |
rplC | 800747 | c.-62C>G | upstream_gene_variant | 0.15 |
rplC | 800771 | c.-38C>T | upstream_gene_variant | 0.17 |
rplC | 800794 | c.-15A>G | upstream_gene_variant | 0.15 |
rplC | 800796 | c.-13A>G | upstream_gene_variant | 0.14 |
rplC | 800798 | c.-10_-9delGG | upstream_gene_variant | 0.14 |
rplC | 800814 | c.6A>G | synonymous_variant | 0.13 |
rplC | 800817 | c.9A>T | synonymous_variant | 0.13 |
fbiC | 1304832 | c.1902C>T | synonymous_variant | 0.14 |
fbiC | 1304856 | c.1926C>G | synonymous_variant | 0.14 |
fbiC | 1304869 | c.1939C>T | synonymous_variant | 0.14 |
fbiC | 1304875 | p.Ile649Val | missense_variant | 0.15 |
fbiC | 1304883 | p.Glu651Asp | missense_variant | 0.15 |
fbiC | 1304891 | p.Ile654Thr | missense_variant | 0.15 |
fbiC | 1304893 | p.Gly655Ser | missense_variant | 0.15 |
fbiC | 1304907 | c.1977C>G | synonymous_variant | 0.17 |
fbiC | 1304910 | c.1980G>C | synonymous_variant | 0.19 |
fbiC | 1304916 | c.1986T>C | synonymous_variant | 0.2 |
fbiC | 1304928 | c.1998T>C | synonymous_variant | 0.18 |
fbiC | 1304937 | c.2007G>C | synonymous_variant | 0.18 |
fbiC | 1304958 | c.2028T>G | synonymous_variant | 0.19 |
fbiC | 1304983 | c.2053C>T | synonymous_variant | 0.17 |
fbiC | 1304994 | c.2064A>G | synonymous_variant | 0.16 |
fbiC | 1304995 | p.Leu689Met | missense_variant | 0.16 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
atpE | 1460852 | c.-193C>G | upstream_gene_variant | 0.13 |
atpE | 1460855 | c.-190T>C | upstream_gene_variant | 0.13 |
atpE | 1460882 | c.-163T>C | upstream_gene_variant | 0.13 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472300 | n.455C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1473756 | n.99G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.45 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1473899 | n.242A>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473943 | n.286G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1473986 | n.329T>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1473987 | n.330G>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474012 | n.355C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474093 | n.436G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474099 | n.442G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474291 | n.635_649delTTCCTCTCCGGAGGA | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474376 | n.719T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474904 | n.1247G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474956 | n.1299C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474961 | n.1304T>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474963 | n.1306G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474964 | n.1307T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474970 | n.1313G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475088 | n.1431A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475199 | n.1542G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475206 | n.1549C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475209 | n.1552G>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475213 | n.1556C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475249 | n.1592T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475252 | n.1595C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1475266 | n.1609T>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1475275 | n.1618C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1475276 | n.1619T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475313 | n.1656G>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475369 | n.1712G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475402 | n.1745C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.42 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.45 |
rrl | 1475599 | n.1942A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475608 | n.1951T>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475638 | n.1981C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475642 | n.1985T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475657 | n.2000A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475659 | n.2002G>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1475765 | n.2111delG | non_coding_transcript_exon_variant | 0.41 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.46 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476089 | n.2432T>C | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476095 | n.2438C>G | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476117 | n.2460G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476214 | n.2557G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476583 | n.2926G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476689 | n.3032A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476690 | n.3033C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476693 | n.3036G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476695 | n.3038T>A | non_coding_transcript_exon_variant | 0.13 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.19 |
rpsA | 1833721 | c.180A>G | synonymous_variant | 0.14 |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.14 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.14 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.15 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.15 |
rpsA | 1833748 | c.207C>G | synonymous_variant | 0.15 |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.14 |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.14 |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.15 |
rpsA | 1833811 | c.270G>T | synonymous_variant | 0.15 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.14 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.14 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.15 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.15 |
rpsA | 1833940 | c.399C>G | synonymous_variant | 0.13 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.99 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.13 |
rpsA | 1834690 | c.1149T>C | synonymous_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169221 | c.1392T>C | synonymous_variant | 0.96 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.18 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.18 |
PPE35 | 2170623 | c.-11G>A | upstream_gene_variant | 0.98 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714955 | c.378C>T | synonymous_variant | 0.97 |
thyX | 3067439 | c.507A>G | synonymous_variant | 0.19 |
thyX | 3067445 | c.501C>G | synonymous_variant | 0.17 |
thyX | 3067457 | c.489C>G | synonymous_variant | 0.17 |
thyX | 3067465 | p.Ile161Val | missense_variant | 0.16 |
thyX | 3067475 | c.471A>G | synonymous_variant | 0.15 |
thyX | 3067490 | c.456C>G | synonymous_variant | 0.18 |
thyX | 3067493 | c.453A>G | synonymous_variant | 0.18 |
thyX | 3067515 | p.Ser144Thr | missense_variant | 0.17 |
thyX | 3067530 | p.Ala139Ser | missense_variant | 0.16 |
thyX | 3067545 | p.Glu134Ala | missense_variant | 0.17 |
thyX | 3067549 | p.Thr133Ala | missense_variant | 0.16 |
thyX | 3067559 | c.387C>G | synonymous_variant | 0.14 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 0.97 |
rpoA | 3877679 | p.Ala277Ser | missense_variant | 0.13 |
rpoA | 3877743 | c.765T>C | synonymous_variant | 0.14 |
rpoA | 3877764 | c.744C>G | synonymous_variant | 0.14 |
rpoA | 3877770 | c.738A>G | synonymous_variant | 0.15 |
rpoA | 3877776 | c.732T>C | synonymous_variant | 0.13 |
rpoA | 3877782 | c.726T>C | synonymous_variant | 0.13 |
rpoA | 3877791 | c.717C>G | synonymous_variant | 0.13 |
rpoA | 3877890 | c.618C>T | synonymous_variant | 0.12 |
rpoA | 3877896 | c.612G>C | synonymous_variant | 0.13 |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.14 |
rpoA | 3877909 | p.Asn200Ser | missense_variant | 0.15 |
rpoA | 3877920 | c.588G>C | synonymous_variant | 0.15 |
rpoA | 3877923 | c.585C>T | synonymous_variant | 0.13 |
rpoA | 3877926 | c.582G>C | synonymous_variant | 0.14 |
rpoA | 3877962 | c.546G>T | synonymous_variant | 0.14 |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.13 |
rpoA | 3878346 | c.162T>C | synonymous_variant | 0.14 |
rpoA | 3878376 | c.132G>C | synonymous_variant | 0.14 |
rpoA | 3878385 | c.123C>G | synonymous_variant | 0.13 |
rpoA | 3878388 | c.120C>G | synonymous_variant | 0.13 |
rpoA | 3878391 | c.117T>C | synonymous_variant | 0.13 |
rpoA | 3878415 | c.93C>T | synonymous_variant | 0.16 |
rpoA | 3878424 | c.84G>C | synonymous_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.13 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.13 |
embB | 4247434 | c.921C>G | synonymous_variant | 0.14 |
embB | 4247437 | c.924A>G | synonymous_variant | 0.14 |
embB | 4247440 | c.927C>G | synonymous_variant | 0.14 |
embB | 4247446 | c.933C>T | synonymous_variant | 0.14 |
embB | 4247464 | c.951C>G | synonymous_variant | 0.18 |
embB | 4247470 | c.957T>C | synonymous_variant | 0.17 |
embB | 4247491 | c.978G>C | synonymous_variant | 0.16 |
embB | 4247497 | c.984T>C | synonymous_variant | 0.16 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 0.98 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338711 | c.-190C>A | upstream_gene_variant | 0.93 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 0.99 |