Rv0001 - c.1299G>C


Drug resistance types
5 Sensitive 2 RR-TB 43 HR-TB 14 MDR-TB 4 Pre-XDR-TB 3 XDR-TB 101 Other
lineage Counts
lineage Count
19
lineage4.1.2.1 4
lineage4.9;lineage6.3 6
lineage4.9;lineage7 1
lineage2.2.1 8
lineage4.7 1
lineage4.9 24
lineage2.1;lineage4.9 14
lineage6.1.3 1
La1.2.BCG;La1.8.1 1
lineage4.8 1
La3;lineage2.1;lineage6.3 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage3.1.2.1;lineage3.1.2.2 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
lineage4.3.4.2.1 2
lineage2.1;lineage4.9;lineage6.3 8
lineage2.1 5
La3;lineage2.1;lineage4.9 2
M.canetti;lineage2.1;lineage4.9 2
lineage4.3.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
La3;lineage2.1;lineage4.9;lineage6.3 3
M.canetti;lineage4.9 2
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La1.6;La3;lineage4.6.4;lineage4.9 1
lineage3 3
M.canetti;lineage2.2.2;lineage6.2 2
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage4.9;lineage9 3
lineage1.2.1.2.1 2
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage4.1.3 2
lineage2.1;lineage6.3 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.4.1.1 1
lineage3.1 1
lineage4.6.2.2 1
La1.7;M.canetti;lineage4.9 2
lineage4 2
lineage4.3.2;lineage4.9 1
M.canetti;lineage4.9;lineage9 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La3;lineage1.1.2 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage4.6.3;lineage4.9;lineage6.3 1
La3 1
La3;lineage4.9 1
La1.7.1;La1.7.X-unk4;lineage7 1
M.canetti;lineage2.1;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
La1.7;lineage4.2 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.2 2
lineage3.1;lineage9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
lineage4.6.1.1 1
La3;lineage4.8 1
La3;lineage2 1
lineage6.3.1 1
La3;M.canetti;lineage2.2.1 1
lineage2.2.2 1
lineage4.2.2.2 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.1.1.1 1
lineage4.3.2 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
La1.2.BCG 1
spoligotype Counts
spoligotype Count
None 172
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR987722 MDR-TB None
SRR1172857 Other None
ERR9786601 Other lineage4.1.2.1 None
ERR9786671 Other None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR3445502 Sensitive lineage4.9;lineage7 None
ERR4819781 Other lineage2.2.1 None
SRR7496523 Other lineage4.7 None
ERR9786604 Other None
SRR1196566 Other lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR9787165 Other lineage6.1.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR9786569 Other lineage4.8 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3675275 Other lineage4.9 None
ERR11252736 Other lineage4.9 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
ERR161034 HR-TB lineage4.3.4.2.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1710057 Other lineage2.1 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
SRR1169194 Other lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR7496517 Other None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
SRR15368973 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
SRR29096879 Sensitive lineage4.9 None
SRR6789626 Other None
ERR4797588 MDR-TB lineage3 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR3675236 Other None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR9125164 Sensitive lineage1.2.1.2.1 None
ERR4800341 Other lineage3 None
ERR702406 Other lineage2.1 None
ERR9117709 Other None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR9786611 HR-TB lineage4.1.3 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR7496509 Other None
ERR176751 Other lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR4816559 MDR-TB lineage4.4.1.1 None
SRR1184346 HR-TB lineage3.1 None
ERR9786645 Other lineage4.6.2.2 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR7821163 Other lineage2.2.1 None
SRR11715718 Sensitive lineage2.1 None
SRR1184294 Other lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1184381 MDR-TB None
SRR3675221 Other lineage4.9 None
SRR28351339 MDR-TB lineage4 None
ERR212001 HR-TB None
SRR28119752 Other lineage4.9 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
SRR1173633 Other lineage4.9 None
SRR1184372 MDR-TB None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR4407463 HR-TB None
SRR1172951 Other lineage4.9 None
SRR1510042 Sensitive lineage1.2.1.2.1 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR5341332 Pre-XDR-TB lineage3 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR1184312 Other lineage2.2.1 None
SRR6046066 Other lineage4.9 None
ERR4816999 Other None
SRR5341470 MDR-TB lineage4.9;lineage9 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR3675524 Other lineage4.9;lineage6.3 None
SRR6045399 Other M.canetti;lineage4.9 None
SRR1165699 Other lineage4.9 None
SRR1172728 RR-TB La3 None
ERR176643 Other La3;lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR23961559 Other La1.7;lineage4.2 None
SRR7496472 Other lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR9786642 Other lineage4.1.2.1 None
ERR9787197 Other None
SRR6789621 Other lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4814352 Other lineage2.2.1 None
SRR12142341 HR-TB lineage2.1 None
ERR176549 Other lineage4.3.4.2.1 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR6785227 Other lineage2.2.1 None
SRR1173363 Other None
SRR3675572 Other None
SRR3675457 Other lineage4.9 None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR1196768 MDR-TB None
SRR25827418 XDR-TB lineage3.1;lineage9 None
SRR1196583 Other lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR6358755 Other lineage4.6.1.1 None
SRR18213713 HR-TB None
ERR4817893 Other La3;lineage4.8 None
SRR20969677 HR-TB La3;lineage2 None
ERR9787139 Other lineage6.3.1 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR3675214 Other lineage4.9 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR2027263 Other lineage4 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR2513470 Other lineage4.2.2.2 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR9117805 Other lineage4.3.2 None
SRR6044942 HR-TB lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR1173400 Other lineage4.9 None
SRR1172234 Other lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR4798262 HR-TB La1.2.BCG None
ERR3804155 Other lineage4.1.2.1 None