Rv0001 - c.1299G>C
Drug resistance types
5 Sensitive
2 RR-TB
43 HR-TB
14 MDR-TB
4 Pre-XDR-TB
3 XDR-TB
101 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage6.3 | 6 |
| M.canetti;lineage4.9 | 2 |
| lineage4.3.2 | 1 |
| lineage4.9 | 24 |
| La3 | 1 |
| La3;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| 19 | |
| lineage2.1;lineage4.9 | 14 |
| lineage2.1 | 5 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.4.1.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 8 |
| lineage2.2.1 | 8 |
| lineage4 | 2 |
| lineage4.1.2.1 | 4 |
| lineage4.3.4.2.1 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage6.1.3 | 1 |
| lineage1.2.1.2.1 | 2 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.8 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La3;lineage1.1.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage2.2.2 | 1 |
| lineage3 | 3 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage3.1 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| La1.7;lineage4.2 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La1.2.BCG | 1 |
| M.canetti;lineage2.2 | 2 |
| La3;lineage2.1;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage9 | 3 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.1.3 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.6.2.2 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.7 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.6.1.1 | 1 |
| La3;lineage4.8 | 1 |
| La3;lineage2 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage6.3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 172 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9117709 | Other | None | SRR1173400 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR11715718 | Sensitive | lineage2.1 | None | SRR7496472 | Other | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR987722 | MDR-TB | None | SRR28351339 | MDR-TB | lineage4 | None | ERR212001 | HR-TB | None | SRR1172857 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR1173633 | Other | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR3675457 | Other | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR9787165 | Other | lineage6.1.3 | None | SRR1172951 | Other | lineage4.9 | None | SRR1510042 | Sensitive | lineage1.2.1.2.1 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR9786569 | Other | lineage4.8 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR3675214 | Other | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR7496517 | Other | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR15368973 | Other | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | SRR6046066 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR29096879 | Sensitive | lineage4.9 | None | ERR4816999 | Other | None | SRR6789626 | Other | None | ERR4797588 | MDR-TB | lineage3 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR9125164 | Sensitive | lineage1.2.1.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR1172234 | Other | lineage4.9 | None | SRR7496509 | Other | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1710057 | Other | lineage2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4800341 | Other | lineage3 | None | ERR702406 | Other | lineage2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR176751 | Other | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR1184294 | Other | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | ERR9787197 | Other | None | SRR6789621 | Other | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR6785227 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1173363 | Other | None | SRR3675572 | Other | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1196768 | MDR-TB | None | SRR1196583 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR3675275 | Other | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR18213713 | HR-TB | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675236 | Other | None |
|---|
