Rv0006 - c.-574_-572delCTAinsTTG
Drug resistance types
117 Sensitive
7 RR-TB
71 HR-TB
19 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
120 Other
lineage Counts
| lineage | Count |
|---|---|
| 103 | |
| lineage4 | 89 |
| lineage4.9 | 56 |
| lineage4.1.3 | 2 |
| lineage4.1.2.1 | 12 |
| lineage2 | 3 |
| lineage1.2.2.2 | 1 |
| lineage3 | 4 |
| lineage2.2.1 | 21 |
| lineage4.5 | 2 |
| lineage4.6.1.1 | 1 |
| lineage1.1.2 | 3 |
| lineage4.1.1 | 3 |
| lineage4.3.2 | 1 |
| lineage4.6.2.2 | 3 |
| lineage4.8 | 2 |
| lineage4.8;lineage4.1 | 2 |
| La3 | 1 |
| lineage6.3.1 | 1 |
| lineage4.3.3 | 3 |
| lineage2.2 | 4 |
| lineage3.1 | 2 |
| lineage4.3.4.1 | 1 |
| lineage2.1 | 3 |
| lineage4.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3 | 1 |
| lineage4.8;La3 | 1 |
| La1.8.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage5.1.4 | 1 |
| lineage4.2.1 | 3 |
| lineage4.1.1.2 | 1 |
| lineage4;lineage1.1 | 1 |
| lineage4.7 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3.2.1 | 1 |
| La1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 341 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR5336148 | Other | None | ERR349265 | Sensitive | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797069 | Other | None | ERR3797071 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR400320 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4024991 | Other | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4407463 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797264 | Sensitive | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4798431 | HR-TB | None | ERR4797313 | HR-TB | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4800341 | Other | lineage3 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811030 | Sensitive | None | ERR4811022 | HR-TB | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4812155 | Sensitive | None | ERR4811142 | MDR-TB | None | ERR6358979 | Other | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6866022 | Other | None | ERR6865502 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866547 | Sensitive | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR702404 | HR-TB | None | ERR736867 | HR-TB | None | ERR6866639 | Other | None | ERR702406 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9634265 | Sensitive | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR1172234 | Other | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR1169249 | Other | La3 | None | ERR9786843 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | SRR10808805 | Sensitive | None | SRR1158918 | Sensitive | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1169194 | Other | None | SRR1169306 | Other | None | SRR1172817 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1173118 | Other | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173363 | HR-TB | None | SRR1173153 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173629 | Other | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1175049 | RR-TB | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1175074 | MDR-TB | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175090 | Other | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175508 | Other | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1196494 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR12416824 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR13861484 | RR-TB | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR13861432 | Sensitive | lineage4.9 | None | SRR15368973 | Other | None | SRR1710057 | Other | lineage2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR4815604 | HR-TB | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | ERR4815296 | Sensitive | lineage4 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675477 | Other | lineage4.9 | None | SRR3675465 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675221 | HR-TB | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | SRR3675229 | Other | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675236 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675279 | Other | None | SRR3675266 | Sensitive | lineage4.9 | None | ERR176568 | Other | lineage4.3 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR3675311 | Other | None | SRR3675283 | Sensitive | lineage4.9 | None | ERR176643 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675318 | Other | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | ERR4815752 | Other | lineage4.9 | None | SRR3675455 | Sensitive | lineage4 | None | ERR2229542 | Other | lineage4.8 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675387 | Sensitive | None | SRR3675522 | Other | None | ERR4816999 | Other | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR212001 | HR-TB | None | SRR3675553 | Sensitive | lineage4.9 | None | ERR4817060 | RR-TB | None | ERR212033 | HR-TB | None | SRR3675572 | Other | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675574 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4817104 | Sensitive | lineage4 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4816734 | Sensitive | lineage4.9 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR5341453 | Sensitive | None | SRR7496472 | Other | None | ERR4817998 | Other | lineage3 | None | ERR4818021 | Other | La1.8.1 | None | ERR234659 | HR-TB | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4818615 | Other | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4819280 | Sensitive | lineage4 | None | SRR5341396 | Other | lineage4 | None | ERR2514929 | HR-TB | lineage1.1.2 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5266542 | Pre-XDR-TB | lineage2.2.1 | ru | ERR4819781 | Other | lineage2.2.1 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819932 | Other | lineage4.7 | None | ERR2446382 | Other | lineage4 | None | SRR5341333 | HR-TB | None | SRR5341323 | Sensitive | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | SRR5341469 | Other | lineage4 | None | ERR2517475 | Other | lineage4 | None | ERR2660539 | Other | lineage4.9 | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6045205 | Sensitive | lineage4.9 | None | SRR6045320 | Other | lineage4.9 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046482 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6046863 | Sensitive | lineage1.1.2 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046802 | Other | lineage4 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831638 | Sensitive | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6785227 | Other | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR6785527 | Sensitive | lineage2.2.1 | None | SRR6789626 | Other | None | ERR502532 | HR-TB | None | ERR502943 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7535086 | Other | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR1063896 | Sensitive | None | SRR7585435 | Other | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323107 | Other | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR1063883 | Sensitive | lineage4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR323043 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1035157 | Other | lineage4.9 | None | ERR137286 | Sensitive | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283043 | Other | lineage4.9 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None |
|---|
