Run ID: SRR6785262
Sample name:
Date: 04-04-2023 15:40:31
Number of reads: 1269697
Percentage reads mapped: 81.71
Strain: lineage4.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.98 |
lineage4.2 | Euro-American | H;T;LAM | None | 0.94 |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None | 0.94 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6238 | c.999G>A | synonymous_variant | 0.24 |
gyrB | 6242 | p.Arg335Lys | missense_variant | 0.21 |
gyrB | 6250 | c.1011A>G | synonymous_variant | 0.19 |
gyrB | 6256 | c.1017G>A | synonymous_variant | 0.18 |
gyrB | 6265 | c.1026C>T | synonymous_variant | 0.15 |
gyrB | 6268 | c.1029C>G | synonymous_variant | 0.18 |
gyrB | 6280 | c.1041T>C | synonymous_variant | 0.15 |
gyrB | 6289 | c.1050C>T | synonymous_variant | 0.12 |
gyrA | 6577 | c.-725T>C | upstream_gene_variant | 0.17 |
gyrA | 6580 | c.-722C>G | upstream_gene_variant | 0.15 |
gyrA | 6598 | c.-704C>G | upstream_gene_variant | 0.21 |
gyrA | 6610 | c.-692C>G | upstream_gene_variant | 0.23 |
gyrA | 6613 | c.-689A>G | upstream_gene_variant | 0.24 |
gyrA | 6616 | c.-686A>G | upstream_gene_variant | 0.24 |
gyrA | 6622 | c.-680C>T | upstream_gene_variant | 0.26 |
gyrA | 6634 | c.-668T>C | upstream_gene_variant | 0.24 |
gyrA | 6637 | c.-665T>G | upstream_gene_variant | 0.25 |
gyrA | 6640 | c.-662A>G | upstream_gene_variant | 0.22 |
gyrA | 6649 | c.-653T>C | upstream_gene_variant | 0.27 |
gyrA | 6655 | c.-647T>C | upstream_gene_variant | 0.3 |
gyrA | 6670 | c.-632G>C | upstream_gene_variant | 0.25 |
gyrA | 6673 | c.-629A>C | upstream_gene_variant | 0.26 |
gyrA | 6676 | c.-626T>G | upstream_gene_variant | 0.27 |
gyrA | 6700 | c.-602T>C | upstream_gene_variant | 0.29 |
gyrA | 6703 | c.-599G>C | upstream_gene_variant | 0.28 |
gyrA | 6709 | c.-593A>G | upstream_gene_variant | 0.3 |
gyrA | 6712 | c.-590G>C | upstream_gene_variant | 0.33 |
gyrA | 6728 | c.-574_-572delCTAinsTTG | upstream_gene_variant | 0.26 |
gyrA | 6742 | c.-560A>G | upstream_gene_variant | 0.24 |
gyrA | 6745 | c.-557T>G | upstream_gene_variant | 0.21 |
gyrA | 6751 | c.-551G>C | upstream_gene_variant | 0.19 |
gyrA | 6760 | c.-542G>C | upstream_gene_variant | 0.18 |
gyrA | 6763 | c.-539G>C | upstream_gene_variant | 0.17 |
gyrA | 6775 | c.-527G>C | upstream_gene_variant | 0.18 |
gyrA | 6793 | c.-509T>C | upstream_gene_variant | 0.2 |
gyrB | 6797 | p.Gly520Thr | missense_variant | 0.18 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8619 | c.1318T>C | synonymous_variant | 0.16 |
gyrA | 8624 | c.1323G>C | synonymous_variant | 0.17 |
gyrA | 8636 | c.1335A>C | synonymous_variant | 0.2 |
gyrA | 8642 | c.1341A>G | synonymous_variant | 0.17 |
gyrA | 8672 | c.1371A>G | synonymous_variant | 0.18 |
gyrA | 8678 | c.1377G>A | synonymous_variant | 0.22 |
gyrA | 8693 | c.1392T>C | synonymous_variant | 0.21 |
gyrA | 8696 | c.1395G>C | synonymous_variant | 0.21 |
gyrA | 8699 | c.1398A>G | synonymous_variant | 0.2 |
gyrA | 8711 | c.1410A>C | synonymous_variant | 0.22 |
gyrA | 8714 | c.1413A>G | synonymous_variant | 0.23 |
gyrA | 8729 | c.1428T>C | synonymous_variant | 0.17 |
gyrA | 8740 | p.Arg480His | missense_variant | 0.17 |
gyrA | 8816 | c.1515C>G | synonymous_variant | 0.15 |
gyrA | 8818 | p.Ser506Asn | missense_variant | 0.16 |
gyrA | 8828 | c.1527T>C | synonymous_variant | 0.14 |
gyrA | 8867 | c.1566A>G | synonymous_variant | 0.23 |
gyrA | 8870 | c.1569G>C | synonymous_variant | 0.22 |
gyrA | 8873 | c.1572A>C | synonymous_variant | 0.21 |
gyrA | 8891 | c.1590G>A | synonymous_variant | 0.21 |
gyrA | 8897 | c.1596T>C | synonymous_variant | 0.2 |
gyrA | 8903 | c.1602T>C | synonymous_variant | 0.19 |
gyrA | 8933 | c.1632G>C | synonymous_variant | 0.13 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491130 | c.348C>G | synonymous_variant | 0.13 |
fgd1 | 491144 | p.Ala121Asp | missense_variant | 0.16 |
fgd1 | 491151 | c.369G>A | synonymous_variant | 0.15 |
fgd1 | 491247 | c.465C>T | synonymous_variant | 0.88 |
fgd1 | 491259 | c.477T>C | synonymous_variant | 0.13 |
mshA | 575659 | c.312A>G | synonymous_variant | 0.13 |
mshA | 575662 | c.315C>G | synonymous_variant | 0.13 |
mshA | 575752 | c.405G>C | synonymous_variant | 0.14 |
mshA | 575824 | c.477T>G | synonymous_variant | 0.14 |
mshA | 575830 | c.483C>G | synonymous_variant | 0.14 |
mshA | 575833 | c.486C>G | synonymous_variant | 0.14 |
mshA | 575845 | c.498C>T | synonymous_variant | 0.15 |
mshA | 575907 | p.Ala187Val | missense_variant | 0.17 |
rpoB | 760101 | c.295T>C | synonymous_variant | 0.17 |
rpoB | 760112 | c.306T>C | synonymous_variant | 0.2 |
rpoB | 760118 | c.312T>G | synonymous_variant | 0.22 |
rpoB | 760121 | c.315T>C | synonymous_variant | 0.2 |
rpoB | 760130 | p.Asp108Glu | missense_variant | 0.19 |
rpoB | 760139 | c.333A>G | synonymous_variant | 0.22 |
rpoB | 760142 | c.336C>G | synonymous_variant | 0.2 |
rpoB | 760181 | c.375T>C | synonymous_variant | 0.18 |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.17 |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.16 |
rpoB | 760223 | c.417T>C | synonymous_variant | 0.14 |
rpoB | 760298 | c.492G>C | synonymous_variant | 0.13 |
rpoB | 760376 | p.Asp190Glu | missense_variant | 0.15 |
rpoB | 760380 | p.Thr192Leu | missense_variant | 0.15 |
rpoB | 760406 | c.600G>C | synonymous_variant | 0.18 |
rpoB | 760412 | c.606C>G | synonymous_variant | 0.2 |
rpoB | 760424 | c.618C>G | synonymous_variant | 0.19 |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.22 |
rpoB | 760475 | c.669A>G | synonymous_variant | 0.27 |
rpoB | 760481 | c.675G>C | synonymous_variant | 0.29 |
rpoB | 760484 | c.678A>G | synonymous_variant | 0.29 |
rpoB | 760522 | p.Ser239Asn | missense_variant | 0.27 |
rpoB | 760532 | c.726T>C | synonymous_variant | 0.23 |
rpoB | 760533 | p.Val243Thr | missense_variant | 0.23 |
rpoB | 760541 | c.735G>C | synonymous_variant | 0.27 |
rpoB | 760547 | c.741G>C | synonymous_variant | 0.28 |
rpoB | 760563 | p.Arg253Met | missense_variant | 0.22 |
rpoB | 760591 | p.Val262Ala | missense_variant | 0.27 |
rpoB | 760595 | c.789C>T | synonymous_variant | 0.13 |
rpoB | 760598 | c.792C>A | synonymous_variant | 0.13 |
rpoB | 760611 | c.805T>C | synonymous_variant | 0.22 |
rpoB | 760646 | c.840C>G | synonymous_variant | 0.14 |
rpoB | 760655 | c.849A>G | synonymous_variant | 0.15 |
rpoB | 760946 | c.1140A>G | synonymous_variant | 0.17 |
rpoB | 760982 | c.1176G>C | synonymous_variant | 0.2 |
rpoB | 760985 | c.1179G>C | synonymous_variant | 0.21 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.2 |
rpoB | 761006 | c.1200C>G | synonymous_variant | 0.2 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.18 |
rpoB | 761021 | c.1215G>C | synonymous_variant | 0.2 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.15 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.14 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.14 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.17 |
rpoB | 761153 | c.1347G>C | synonymous_variant | 0.14 |
rpoB | 761657 | c.1851C>G | synonymous_variant | 0.14 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.14 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.15 |
rpoC | 763013 | c.-357C>G | upstream_gene_variant | 0.17 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.16 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.19 |
rpoC | 763085 | c.-285C>G | upstream_gene_variant | 0.15 |
rpoC | 763441 | c.72C>T | synonymous_variant | 0.2 |
rpoC | 763444 | c.75T>C | synonymous_variant | 0.2 |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.28 |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.28 |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.28 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.31 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.29 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.28 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.26 |
rpoC | 763603 | c.234C>T | synonymous_variant | 0.24 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.23 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.24 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.23 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.16 |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.18 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.21 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.18 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.18 |
rpoC | 763741 | c.372C>T | synonymous_variant | 0.15 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.15 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.17 |
rpoC | 763774 | c.405G>C | synonymous_variant | 0.18 |
rpoC | 763987 | c.618C>T | synonymous_variant | 0.15 |
rpoC | 763991 | p.Ile208Leu | missense_variant | 0.15 |
rpoC | 763996 | c.627T>C | synonymous_variant | 0.14 |
rpoC | 764002 | c.633C>G | synonymous_variant | 0.15 |
rpoC | 764005 | c.636G>C | synonymous_variant | 0.16 |
rpoC | 764044 | c.675T>C | synonymous_variant | 0.17 |
rpoC | 764059 | c.690G>T | synonymous_variant | 0.18 |
rpoC | 764083 | c.714A>G | synonymous_variant | 0.16 |
rpoC | 764116 | c.747C>T | synonymous_variant | 0.14 |
rpoC | 764131 | c.762T>C | synonymous_variant | 0.16 |
rpoC | 764140 | c.771C>T | synonymous_variant | 0.17 |
rpoC | 764188 | c.819A>G | synonymous_variant | 0.15 |
rpoC | 764195 | p.Ser276Ile | missense_variant | 0.15 |
rpoC | 764203 | c.834G>C | synonymous_variant | 0.16 |
rpoC | 764206 | c.837T>C | synonymous_variant | 0.2 |
rpoC | 764215 | c.846A>G | synonymous_variant | 0.21 |
rpoC | 764236 | c.867G>A | synonymous_variant | 0.19 |
rpoC | 764248 | c.879C>G | synonymous_variant | 0.2 |
rpoC | 764257 | c.888G>C | synonymous_variant | 0.18 |
rpoC | 764266 | c.897T>C | synonymous_variant | 0.14 |
rpoC | 764269 | c.900G>C | synonymous_variant | 0.14 |
rpoC | 764278 | c.909A>G | synonymous_variant | 0.15 |
rpoC | 764338 | c.969G>A | synonymous_variant | 0.16 |
rpoC | 764419 | c.1050C>G | synonymous_variant | 0.19 |
rpoC | 764428 | c.1059G>C | synonymous_variant | 0.2 |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.17 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.17 |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.15 |
rpoC | 764449 | c.1080G>C | synonymous_variant | 0.15 |
rpoC | 764452 | c.1083T>C | synonymous_variant | 0.15 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.15 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.15 |
rpoC | 764489 | c.1120C>T | synonymous_variant | 0.18 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.22 |
rpoC | 764510 | c.1141C>T | synonymous_variant | 0.18 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.17 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.16 |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.17 |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.16 |
rpoC | 764554 | c.1185C>T | synonymous_variant | 0.22 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.21 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.18 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.16 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.15 |
rpoC | 764593 | c.1224C>T | synonymous_variant | 0.14 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.2 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.2 |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.21 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.18 |
rpoC | 764827 | c.1458G>C | synonymous_variant | 0.21 |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.18 |
rpoC | 764872 | c.1503A>G | synonymous_variant | 0.15 |
rpoC | 765478 | c.2109T>C | synonymous_variant | 0.27 |
rpoC | 765499 | c.2130C>G | synonymous_variant | 0.18 |
rpoC | 765529 | c.2160C>T | synonymous_variant | 0.18 |
rpoC | 765541 | c.2172C>G | synonymous_variant | 0.19 |
rpoC | 765553 | c.2184C>T | synonymous_variant | 0.13 |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.19 |
rpoC | 765982 | c.2613C>G | synonymous_variant | 0.14 |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.14 |
rpoC | 766010 | c.2641_2642delTCinsAG | synonymous_variant | 0.15 |
rpoC | 766021 | c.2652G>C | synonymous_variant | 0.16 |
rpoC | 766027 | c.2658G>C | synonymous_variant | 0.15 |
rpoC | 766327 | c.2958C>A | synonymous_variant | 0.14 |
rpoC | 766345 | c.2976T>C | synonymous_variant | 0.15 |
rpoC | 766348 | c.2979A>G | synonymous_variant | 0.15 |
rpoC | 766357 | c.2988C>T | synonymous_variant | 0.15 |
rpoC | 766363 | c.2994G>C | synonymous_variant | 0.15 |
rpoC | 766381 | c.3012C>T | synonymous_variant | 0.15 |
rpoC | 766384 | c.3015A>G | synonymous_variant | 0.15 |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.21 |
rpoC | 766447 | c.3078T>C | synonymous_variant | 0.21 |
rpoC | 766462 | c.3093G>C | synonymous_variant | 0.19 |
rpoC | 766522 | c.3153C>G | synonymous_variant | 0.15 |
rpoC | 766528 | c.3159T>C | synonymous_variant | 0.18 |
rpoC | 766531 | c.3162G>C | synonymous_variant | 0.18 |
rpoC | 766540 | p.Asp1057Glu | missense_variant | 0.23 |
rpoC | 766573 | c.3204T>C | synonymous_variant | 0.18 |
rpoC | 766582 | c.3213C>G | synonymous_variant | 0.14 |
rpoC | 766583 | p.Gly1072Ser | missense_variant | 0.15 |
rpoC | 766594 | c.3225G>C | synonymous_variant | 0.14 |
rpoC | 766597 | c.3228C>G | synonymous_variant | 0.14 |
rpoC | 766607 | p.Ile1080Leu | missense_variant | 0.15 |
rpoC | 766738 | c.3369G>C | synonymous_variant | 0.17 |
rpoC | 766765 | c.3396A>C | synonymous_variant | 0.2 |
rpoC | 766774 | c.3405T>C | synonymous_variant | 0.17 |
rpoC | 766801 | c.3432C>G | synonymous_variant | 0.32 |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.32 |
rpoC | 766861 | c.3492G>C | synonymous_variant | 0.27 |
rpoC | 766864 | c.3495G>C | synonymous_variant | 0.27 |
rpoC | 766867 | c.3498C>G | synonymous_variant | 0.24 |
rpoC | 766933 | c.3564A>G | synonymous_variant | 0.16 |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.15 |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.18 |
rpoC | 766972 | c.3603G>C | synonymous_variant | 0.17 |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.17 |
rpoC | 767033 | p.Ser1222Thr | missense_variant | 0.12 |
rpoC | 767059 | c.3690T>G | synonymous_variant | 0.21 |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.22 |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.26 |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.21 |
rpoC | 767134 | c.3765C>A | synonymous_variant | 0.21 |
rpoC | 767158 | c.3789T>C | synonymous_variant | 0.24 |
rpoC | 767180 | p.Ala1271Gln | missense_variant | 0.21 |
rpoC | 767191 | c.3822C>G | synonymous_variant | 0.19 |
rpoC | 767206 | c.3837C>G | synonymous_variant | 0.17 |
rpoC | 767209 | c.3840T>C | synonymous_variant | 0.14 |
rpoC | 767212 | c.3843G>C | synonymous_variant | 0.14 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 0.97 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781628 | c.69T>C | synonymous_variant | 0.23 |
rpsL | 781631 | c.72G>C | synonymous_variant | 0.19 |
rpsL | 781649 | c.90T>C | synonymous_variant | 0.23 |
rpsL | 781655 | c.96T>C | synonymous_variant | 0.24 |
rpsL | 781700 | c.141G>C | synonymous_variant | 0.29 |
rpsL | 781703 | c.144G>T | synonymous_variant | 0.29 |
rpsL | 781715 | c.156T>C | synonymous_variant | 0.31 |
rpsL | 781728 | c.169T>C | synonymous_variant | 0.33 |
rpsL | 781736 | c.177T>C | synonymous_variant | 0.33 |
rpsL | 781742 | c.183C>T | synonymous_variant | 0.35 |
rpsL | 781748 | c.189C>G | synonymous_variant | 0.34 |
rpsL | 781754 | c.195G>C | synonymous_variant | 0.32 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.27 |
rpsL | 781772 | c.213C>A | synonymous_variant | 0.23 |
rpsL | 781808 | c.249C>T | synonymous_variant | 0.25 |
rpsL | 781811 | c.252C>T | synonymous_variant | 0.26 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.18 |
rpsL | 781838 | c.279G>C | synonymous_variant | 0.14 |
rpsL | 781841 | c.282C>G | synonymous_variant | 0.14 |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.15 |
rpsL | 781877 | c.318T>C | synonymous_variant | 0.15 |
rpsL | 781892 | c.333A>G | synonymous_variant | 0.15 |
rpsL | 781898 | c.339A>T | synonymous_variant | 0.15 |
rpsL | 781916 | c.357T>C | synonymous_variant | 0.15 |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.16 |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.14 |
rplC | 800723 | c.-86C>G | upstream_gene_variant | 0.15 |
rplC | 800747 | c.-62C>G | upstream_gene_variant | 0.16 |
fbiC | 1303755 | c.825T>C | synonymous_variant | 0.14 |
fbiC | 1303761 | c.831T>C | synonymous_variant | 0.15 |
fbiC | 1303785 | c.855G>C | synonymous_variant | 0.14 |
fbiC | 1303789 | p.Ile287Val | missense_variant | 0.17 |
fbiC | 1303797 | c.867A>G | synonymous_variant | 0.23 |
fbiC | 1303818 | c.888C>G | synonymous_variant | 0.25 |
fbiC | 1303836 | c.906G>C | synonymous_variant | 0.16 |
fbiC | 1303846 | p.Phe306Val | missense_variant | 0.16 |
fbiC | 1303854 | c.924T>C | synonymous_variant | 0.16 |
fbiC | 1303860 | c.930A>C | synonymous_variant | 0.15 |
fbiC | 1303905 | c.975G>C | synonymous_variant | 0.15 |
fbiC | 1303914 | c.984C>G | synonymous_variant | 0.15 |
fbiC | 1303920 | c.990C>T | synonymous_variant | 0.15 |
fbiC | 1303980 | c.1050G>A | synonymous_variant | 0.19 |
fbiC | 1303998 | c.1068T>G | synonymous_variant | 0.2 |
fbiC | 1304004 | c.1074A>G | synonymous_variant | 0.17 |
fbiC | 1304008 | c.1078T>C | synonymous_variant | 0.14 |
fbiC | 1304022 | c.1092T>C | synonymous_variant | 0.14 |
fbiC | 1304031 | c.1101C>G | synonymous_variant | 0.14 |
fbiC | 1304034 | c.1104A>G | synonymous_variant | 0.14 |
fbiC | 1304553 | c.1623C>T | synonymous_variant | 0.14 |
fbiC | 1304559 | p.Glu543Asp | missense_variant | 0.16 |
fbiC | 1304565 | c.1635C>G | synonymous_variant | 0.15 |
fbiC | 1304568 | c.1638T>C | synonymous_variant | 0.15 |
fbiC | 1304613 | c.1683T>C | synonymous_variant | 0.18 |
fbiC | 1304634 | c.1704C>G | synonymous_variant | 0.19 |
fbiC | 1304640 | c.1710A>C | synonymous_variant | 0.18 |
fbiC | 1304646 | c.1716T>C | synonymous_variant | 0.16 |
fbiC | 1304658 | c.1728C>G | synonymous_variant | 0.14 |
fbiC | 1304983 | c.2053C>T | synonymous_variant | 0.14 |
fbiC | 1305033 | c.2103T>G | synonymous_variant | 0.12 |
atpE | 1461132 | p.Val30Ile | missense_variant | 0.14 |
atpE | 1461149 | c.105T>G | synonymous_variant | 0.13 |
atpE | 1461150 | p.Ile36Val | missense_variant | 0.13 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1473899 | n.242A>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1473943 | n.286G>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475006 | n.1349A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475013 | n.1356G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475088 | n.1431A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475199 | n.1542G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475249 | n.1592T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475266 | n.1609T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475275 | n.1618C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475276 | n.1619T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.14 |
inhA | 1674672 | c.471C>G | synonymous_variant | 0.13 |
inhA | 1674703 | c.502T>C | synonymous_variant | 0.14 |
inhA | 1674801 | c.600T>C | synonymous_variant | 0.14 |
inhA | 1674816 | c.615T>C | synonymous_variant | 0.13 |
inhA | 1674870 | c.669T>C | synonymous_variant | 0.14 |
inhA | 1674879 | c.678T>C | synonymous_variant | 0.13 |
inhA | 1674903 | c.702T>C | synonymous_variant | 0.13 |
rpsA | 1833554 | p.Thr5Ala | missense_variant | 0.15 |
rpsA | 1833568 | c.27G>C | synonymous_variant | 0.16 |
rpsA | 1833589 | c.48A>T | synonymous_variant | 0.26 |
rpsA | 1833595 | c.54T>C | synonymous_variant | 0.25 |
rpsA | 1833661 | c.120A>G | synonymous_variant | 0.18 |
rpsA | 1833667 | c.126C>G | synonymous_variant | 0.18 |
rpsA | 1833721 | c.180A>G | synonymous_variant | 0.19 |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.16 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.16 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.16 |
rpsA | 1833748 | c.207C>G | synonymous_variant | 0.14 |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.16 |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.16 |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.19 |
rpsA | 1833811 | c.270G>T | synonymous_variant | 0.17 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.14 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.14 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.18 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.19 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.18 |
rpsA | 1833886 | c.345C>G | synonymous_variant | 0.18 |
rpsA | 1834081 | c.540C>T | synonymous_variant | 0.17 |
rpsA | 1834096 | c.555G>C | synonymous_variant | 0.16 |
rpsA | 1834099 | c.558C>G | synonymous_variant | 0.16 |
rpsA | 1834102 | c.561T>C | synonymous_variant | 0.17 |
rpsA | 1834105 | c.564C>G | synonymous_variant | 0.18 |
rpsA | 1834108 | c.567C>G | synonymous_variant | 0.18 |
rpsA | 1834123 | c.582C>G | synonymous_variant | 0.15 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.16 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.15 |
rpsA | 1834435 | c.894G>C | synonymous_variant | 0.18 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.26 |
rpsA | 1834465 | c.924T>C | synonymous_variant | 0.24 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.24 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.24 |
rpsA | 1834513 | c.972C>G | synonymous_variant | 0.24 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.26 |
rpsA | 1834540 | c.999G>C | synonymous_variant | 0.24 |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.21 |
rpsA | 1834555 | c.1014T>G | synonymous_variant | 0.18 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.19 |
rpsA | 1834618 | c.1077G>C | synonymous_variant | 0.19 |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.23 |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.28 |
rpsA | 1834654 | p.Glu371Asp | missense_variant | 0.21 |
rpsA | 1834690 | c.1149T>C | synonymous_variant | 0.22 |
rpsA | 1834732 | c.1191T>C | synonymous_variant | 0.16 |
rpsA | 1834733 | p.Ala398Ser | missense_variant | 0.16 |
rpsA | 1834738 | c.1197A>G | synonymous_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170308 | p.Leu102Ala | missense_variant | 0.88 |
PPE35 | 2170313 | c.300G>C | synonymous_variant | 0.88 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518864 | c.750G>C | synonymous_variant | 0.16 |
kasA | 2518879 | c.765A>G | synonymous_variant | 0.15 |
kasA | 2518885 | c.771T>C | synonymous_variant | 0.16 |
kasA | 2518898 | c.784T>C | synonymous_variant | 0.17 |
kasA | 2518906 | c.792A>G | synonymous_variant | 0.18 |
kasA | 2518910 | p.Leu266Met | missense_variant | 0.14 |
kasA | 2518921 | c.807T>C | synonymous_variant | 0.15 |
kasA | 2518927 | c.813C>G | synonymous_variant | 0.16 |
kasA | 2518936 | c.822C>G | synonymous_variant | 0.16 |
kasA | 2518939 | c.825T>C | synonymous_variant | 0.13 |
kasA | 2518942 | c.828T>C | synonymous_variant | 0.13 |
folC | 2747275 | c.324T>C | synonymous_variant | 0.13 |
folC | 2747289 | p.Pro104Ala | missense_variant | 0.13 |
folC | 2747290 | c.309A>G | synonymous_variant | 0.13 |
folC | 2747302 | c.297A>C | synonymous_variant | 0.13 |
ribD | 2986910 | c.72C>A | synonymous_variant | 1.0 |
Rv2752c | 3065048 | c.1144C>T | synonymous_variant | 0.15 |
Rv2752c | 3065052 | c.1140G>A | synonymous_variant | 0.15 |
Rv2752c | 3065055 | c.1137T>C | synonymous_variant | 0.14 |
Rv2752c | 3065064 | c.1128G>C | synonymous_variant | 0.14 |
thyX | 3067274 | c.672C>G | synonymous_variant | 0.15 |
thyX | 3067355 | c.591A>C | synonymous_variant | 0.15 |
thyX | 3067367 | c.579G>C | synonymous_variant | 0.14 |
thyX | 3067391 | c.555G>C | synonymous_variant | 0.19 |
thyX | 3067394 | c.552G>C | synonymous_variant | 0.2 |
thyX | 3067439 | c.507A>G | synonymous_variant | 0.3 |
thyX | 3067445 | c.501C>G | synonymous_variant | 0.3 |
thyX | 3067457 | c.489C>G | synonymous_variant | 0.39 |
thyX | 3067465 | p.Ile161Val | missense_variant | 0.41 |
thyX | 3067475 | c.471A>G | synonymous_variant | 0.44 |
thyX | 3067490 | c.456C>G | synonymous_variant | 0.44 |
thyX | 3067493 | c.453A>G | synonymous_variant | 0.44 |
thyX | 3067515 | p.Ser144Thr | missense_variant | 0.42 |
thyX | 3067530 | p.Ala139Ser | missense_variant | 0.33 |
thyX | 3067545 | p.Glu134Ala | missense_variant | 0.32 |
thyX | 3067549 | p.Thr133Ala | missense_variant | 0.32 |
thyX | 3067556 | p.His130Gln | missense_variant | 0.33 |
thyX | 3067559 | c.387C>G | synonymous_variant | 0.35 |
thyX | 3067565 | p.Asp127Glu | missense_variant | 0.36 |
thyX | 3067570 | p.Ala126Pro | missense_variant | 0.33 |
thyX | 3067577 | c.369G>A | synonymous_variant | 0.32 |
thyX | 3067583 | c.363C>G | synonymous_variant | 0.31 |
thyX | 3067601 | p.Arg115His | missense_variant | 0.26 |
thyX | 3067611 | p.Lys112Thr | missense_variant | 0.26 |
thyX | 3067619 | c.327A>C | synonymous_variant | 0.26 |
thyX | 3067631 | c.315C>G | synonymous_variant | 0.26 |
thyX | 3067634 | c.312C>G | synonymous_variant | 0.26 |
thyX | 3067652 | c.294T>C | synonymous_variant | 0.26 |
thyX | 3067661 | c.285C>G | synonymous_variant | 0.26 |
thyX | 3067685 | c.261A>C | synonymous_variant | 0.21 |
thyX | 3067691 | p.Ile85Leu | missense_variant | 0.21 |
thyX | 3067694 | c.252G>C | synonymous_variant | 0.21 |
thyX | 3067718 | c.228C>G | synonymous_variant | 0.19 |
thyX | 3067721 | c.225T>C | synonymous_variant | 0.19 |
thyX | 3067762 | c.184C>A | synonymous_variant | 0.13 |
thyX | 3067765 | p.Leu61Ile | missense_variant | 0.13 |
thyX | 3067772 | c.174C>G | synonymous_variant | 0.14 |
thyX | 3067781 | c.165C>A | synonymous_variant | 0.18 |
thyX | 3067793 | c.153T>C | synonymous_variant | 0.16 |
thyX | 3067799 | c.147G>A | synonymous_variant | 0.17 |
thyX | 3067802 | c.144C>G | synonymous_variant | 0.2 |
thyX | 3067814 | c.132T>C | synonymous_variant | 0.22 |
thyX | 3067850 | c.96A>C | synonymous_variant | 0.29 |
thyX | 3067869 | p.Thr26Ser | missense_variant | 0.28 |
thyX | 3067874 | c.72C>G | synonymous_variant | 0.29 |
thyX | 3067883 | c.63C>G | synonymous_variant | 0.26 |
thyX | 3067886 | c.60A>C | synonymous_variant | 0.23 |
thyX | 3067889 | c.57C>G | synonymous_variant | 0.23 |
thyX | 3067898 | p.Asp16Glu | missense_variant | 0.21 |
thyX | 3067935 | p.Thr4Ile | missense_variant | 0.15 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 0.96 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3877848 | c.660C>T | synonymous_variant | 0.13 |
rpoA | 3877857 | c.651G>A | synonymous_variant | 0.16 |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.18 |
rpoA | 3877875 | c.633T>G | synonymous_variant | 0.14 |
rpoA | 3877878 | c.630G>C | synonymous_variant | 0.14 |
rpoA | 3877890 | c.618C>T | synonymous_variant | 0.17 |
rpoA | 3877896 | c.612G>C | synonymous_variant | 0.16 |
rpoA | 3877900 | p.Ser203Asn | missense_variant | 0.14 |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.14 |
rpoA | 3877920 | c.588G>C | synonymous_variant | 0.15 |
rpoA | 3877923 | c.585C>T | synonymous_variant | 0.14 |
rpoA | 3877926 | c.582G>C | synonymous_variant | 0.14 |
rpoA | 3877962 | c.546G>T | synonymous_variant | 0.14 |
rpoA | 3878391 | c.117T>C | synonymous_variant | 0.13 |
rpoA | 3878683 | c.-176G>C | upstream_gene_variant | 0.14 |
clpC1 | 4038356 | c.2349T>C | synonymous_variant | 0.23 |
clpC1 | 4038359 | c.2346A>G | synonymous_variant | 0.22 |
clpC1 | 4038368 | c.2337T>C | synonymous_variant | 0.21 |
clpC1 | 4038388 | c.2317T>C | synonymous_variant | 0.23 |
clpC1 | 4038392 | c.2313C>T | synonymous_variant | 0.21 |
clpC1 | 4038398 | c.2307G>T | synonymous_variant | 0.21 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 0.2 |
clpC1 | 4038407 | c.2298G>C | synonymous_variant | 0.25 |
clpC1 | 4038419 | c.2286T>C | synonymous_variant | 0.21 |
clpC1 | 4038433 | c.2272C>T | synonymous_variant | 0.17 |
clpC1 | 4038434 | c.2271G>A | synonymous_variant | 0.17 |
clpC1 | 4038456 | p.Val750Glu | missense_variant | 0.16 |
clpC1 | 4038460 | p.Leu749Met | missense_variant | 0.16 |
clpC1 | 4038486 | p.Gly740Asn | missense_variant | 0.14 |
clpC1 | 4038489 | p.Ala739Gly | missense_variant | 0.14 |
clpC1 | 4038494 | c.2211G>C | synonymous_variant | 0.14 |
clpC1 | 4038498 | p.Ser736His | missense_variant | 0.14 |
clpC1 | 4038530 | p.Glu725Asp | missense_variant | 0.15 |
clpC1 | 4038596 | c.2109A>G | synonymous_variant | 0.22 |
clpC1 | 4038623 | c.2082A>G | synonymous_variant | 0.18 |
clpC1 | 4038640 | p.Asp689Asn | missense_variant | 0.19 |
clpC1 | 4038653 | c.2052C>T | synonymous_variant | 0.19 |
clpC1 | 4038671 | c.2034T>C | synonymous_variant | 0.15 |
clpC1 | 4038683 | c.2022T>C | synonymous_variant | 0.15 |
clpC1 | 4038695 | c.2010C>G | synonymous_variant | 0.14 |
clpC1 | 4038953 | c.1752A>G | synonymous_variant | 0.17 |
clpC1 | 4038956 | c.1749T>C | synonymous_variant | 0.15 |
clpC1 | 4038971 | c.1734T>C | synonymous_variant | 0.14 |
clpC1 | 4038974 | c.1731T>C | synonymous_variant | 0.14 |
clpC1 | 4040291 | c.414G>C | synonymous_variant | 0.15 |
clpC1 | 4040318 | c.387C>G | synonymous_variant | 0.13 |
embC | 4241501 | p.Ser547Thr | missense_variant | 0.13 |
embC | 4241506 | c.1644G>C | synonymous_variant | 0.13 |
embC | 4241518 | c.1656A>G | synonymous_variant | 0.14 |
embC | 4241521 | c.1659T>C | synonymous_variant | 0.15 |
embC | 4241536 | c.1674A>G | synonymous_variant | 0.17 |
embC | 4241539 | c.1677T>C | synonymous_variant | 0.17 |
embC | 4241545 | c.1683T>C | synonymous_variant | 0.17 |
embC | 4241548 | c.1686T>C | synonymous_variant | 0.16 |
embC | 4241551 | c.1689A>G | synonymous_variant | 0.17 |
embC | 4241567 | p.Ile569Val | missense_variant | 0.24 |
embC | 4241572 | c.1710C>G | synonymous_variant | 0.2 |
embC | 4241578 | c.1716G>C | synonymous_variant | 0.2 |
embC | 4241584 | c.1722T>C | synonymous_variant | 0.22 |
embC | 4241587 | c.1725C>G | synonymous_variant | 0.17 |
embC | 4241591 | p.Leu577Val | missense_variant | 0.22 |
embC | 4241611 | c.1749G>C | synonymous_variant | 0.24 |
embC | 4241614 | c.1752A>C | synonymous_variant | 0.24 |
embC | 4241626 | c.1764T>C | synonymous_variant | 0.21 |
embC | 4241635 | c.1773G>C | synonymous_variant | 0.15 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242859 | c.-374C>T | upstream_gene_variant | 0.14 |
embA | 4242862 | c.-371A>G | upstream_gene_variant | 0.14 |
embC | 4242863 | p.Tyr1001Asn | missense_variant | 0.15 |
embA | 4242883 | c.-350C>G | upstream_gene_variant | 0.14 |
embA | 4244516 | c.1284G>C | synonymous_variant | 0.14 |
embA | 4244517 | p.Leu429Val | missense_variant | 0.14 |
embA | 4244523 | p.Pro431Ala | missense_variant | 0.14 |
embA | 4244534 | c.1302T>C | synonymous_variant | 0.16 |
embA | 4244537 | c.1305T>G | synonymous_variant | 0.16 |
embA | 4244543 | c.1311C>G | synonymous_variant | 0.14 |
embA | 4245182 | c.1950T>C | synonymous_variant | 0.15 |
embA | 4245198 | p.Leu656Ile | missense_variant | 0.13 |
embA | 4245207 | c.1975T>C | synonymous_variant | 0.18 |
embA | 4245215 | c.1983A>C | synonymous_variant | 0.18 |
embA | 4245222 | p.Tyr664Gln | missense_variant | 0.16 |
embA | 4245248 | c.2016G>C | synonymous_variant | 0.18 |
embA | 4245257 | c.2025A>G | synonymous_variant | 0.2 |
embA | 4245263 | c.2031A>G | synonymous_variant | 0.16 |
embA | 4245282 | p.Ile684Val | missense_variant | 0.14 |
embA | 4245290 | c.2058C>G | synonymous_variant | 0.15 |
embA | 4245293 | c.2061T>G | synonymous_variant | 0.16 |
embA | 4245296 | c.2064G>C | synonymous_variant | 0.16 |
embA | 4245299 | c.2067A>G | synonymous_variant | 0.15 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.13 |
embB | 4249594 | c.3081G>A | synonymous_variant | 0.95 |
aftB | 4268081 | c.756A>G | synonymous_variant | 0.17 |
aftB | 4268084 | c.753G>C | synonymous_variant | 0.17 |
aftB | 4268096 | c.741C>G | synonymous_variant | 0.14 |
aftB | 4268099 | c.738G>C | synonymous_variant | 0.14 |
aftB | 4268102 | c.735C>G | synonymous_variant | 0.14 |
aftB | 4268193 | p.Leu215Ala | missense_variant | 0.13 |
ethA | 4328376 | c.-903G>C | upstream_gene_variant | 0.91 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
PPE35 | 2167033 | c.343_*615del | stop_lost&conservative_inframe_deletion&splice_region_variant | 1.0 |