SRR18213713
|
HR-TB
|
|
None
|
ERR987729
|
HR-TB
|
lineage3.1.2.1;lineage3.1.2.2
|
None
|
SRR20969677
|
HR-TB
|
La3;lineage2
|
None
|
SRR29055629
|
MDR-TB
|
La3;lineage2.2.1
|
None
|
ERR4831546
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
SRR3675214
|
Other
|
lineage4.9
|
None
|
ERR550636
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4817896
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4811022
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR9119669
|
HR-TB
|
lineage4.9
|
None
|
SRR19303884
|
Other
|
lineage2.1;lineage6.3
|
None
|
SRR3675501
|
Other
|
La1.7;lineage4.9
|
None
|
ERR4811142
|
RR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR323039
|
HR-TB
|
La2;lineage4.9
|
None
|
SRR20969731
|
Other
|
lineage2.2.1
|
None
|
ERR323107
|
Sensitive
|
lineage4.9
|
None
|
ERR4799025
|
Other
|
lineage4.8
|
None
|
SRR6785262
|
Sensitive
|
lineage4.2.1
|
None
|
ERR1063857
|
MDR-TB
|
La2;lineage4.9
|
None
|
ERR4811105
|
HR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4815604
|
Other
|
|
None
|
ERR1035157
|
Other
|
lineage4.9
|
None
|
SRR14782054
|
Other
|
lineage4.9
|
None
|
ERR181887
|
Other
|
lineage4.9
|
None
|
SRR1174897
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
ERR2446566
|
Other
|
lineage4.9
|
None
|
SRR6046133
|
HR-TB
|
lineage4.9
|
None
|
SRR6045347
|
Other
|
lineage4.9
|
None
|
SRR28119811
|
Other
|
lineage2.2.1;lineage6.3
|
None
|
ERR9119525
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SAMEA2533358
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4797588
|
MDR-TB
|
lineage3
|
None
|
ERR1873492
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
ERR3797036
|
HR-TB
|
lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR6045327
|
Other
|
lineage2.1;lineage4.3.2;lineage4.9
|
None
|
ERR4820854
|
Other
|
lineage4.1.2.1
|
None
|
SRR6458423
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6785263
|
Sensitive
|
lineage2.2.1
|
None
|
SRR3675236
|
Other
|
|
None
|
ERR176793
|
Other
|
lineage4.1.1.1
|
None
|
SRR3675524
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR9117805
|
Other
|
lineage4.3.2
|
None
|
ERR3283044
|
Other
|
lineage4
|
None
|
ERR323053
|
MDR-TB
|
La2;lineage4.9;lineage9
|
None
|
ERR4797201
|
Other
|
lineage1.2.2.2
|
None
|
ERR108471
|
HR-TB
|
lineage4.9
|
None
|
ERR3804169
|
HR-TB
|
lineage4.1.3
|
None
|
ERR4816466
|
HR-TB
|
lineage4.9
|
None
|
ERR9786711
|
Sensitive
|
lineage4.6.2.2
|
None
|
SRR13583478
|
HR-TB
|
lineage4.3.4.1
|
None
|
ERR702406
|
Other
|
lineage2.1
|
None
|
ERR9117709
|
Other
|
|
None
|
ERR2026696
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR3675549
|
Other
|
lineage4.9
|
None
|
ERR5336148
|
Other
|
lineage2.1;lineage6.3
|
None
|
SRR3675581
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR323056
|
HR-TB
|
lineage4.4.1.2
|
None
|
SRR1172234
|
Other
|
lineage4.9
|
None
|
ERR736867
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR702404
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4797054
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR5341302
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
ERR502532
|
Other
|
M.canetti;lineage2.1;lineage6.3
|
None
|
ERR4798493
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1183111
|
HR-TB
|
lineage4.9
|
None
|
SRR3675517
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6045785
|
MDR-TB
|
lineage4.2;lineage4.8.1;lineage4.9
|
None
|
SRR23961559
|
Other
|
La1.7;lineage4.2
|
None
|
SRR6046225
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR1184294
|
Other
|
lineage4.9
|
None
|
ERR3283018
|
HR-TB
|
lineage4.9
|
None
|
ERR4798262
|
HR-TB
|
La1.2.BCG
|
None
|
ERR3804155
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045233
|
Other
|
M.canetti;lineage4.9
|
None
|
ERR3797070
|
Other
|
lineage4.9
|
None
|
SRR12416824
|
HR-TB
|
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
ERR3283025
|
MDR-TB
|
La1.7;lineage4.9
|
None
|
ERR9786642
|
Other
|
lineage4.1.2.1
|
None
|
SRR6046196
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR11252612
|
Other
|
La3;lineage4.9
|
None
|
ERR9787197
|
Other
|
|
None
|
SRR28119805
|
Other
|
lineage4.9
|
None
|
ERR2706950
|
MDR-TB
|
lineage5.2
|
cd
|
SRR8552928
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR181824
|
HR-TB
|
lineage4.9
|
None
|
ERR502908
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9786601
|
Other
|
lineage4.1.2.1
|
None
|
ERR9786671
|
Other
|
|
None
|
SRR12142341
|
HR-TB
|
lineage2.1
|
None
|
ERR3801503
|
Sensitive
|
lineage4.6.2.2
|
None
|
ERR9786421
|
Other
|
lineage4.1.2.1
|
None
|
ERR736875
|
HR-TB
|
lineage4.9
|
None
|
SRR6045555
|
Other
|
lineage4.9
|
None
|
SRR1167384
|
Other
|
La3;lineage4.9
|
None
|
SRR6045380
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR13265528
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR3283036
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR9786694
|
Other
|
lineage4.1.2.1
|
None
|
ERR4407463
|
HR-TB
|
|
None
|
ERR9787165
|
Other
|
lineage6.1.3
|
None
|
SRR1172951
|
Other
|
lineage4.9
|
None
|
SRR19304036
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR176651
|
Other
|
lineage4.9
|
None
|
SRR25827418
|
XDR-TB
|
lineage3.1;lineage9
|
None
|
SRR6046540
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR29097026
|
Other
|
lineage4.9
|
None
|
SRR1172310
|
HR-TB
|
lineage4.9
|
None
|
ERR2026698
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR6785267
|
Other
|
lineage2.2.1
|
None
|
ERR6358755
|
Other
|
lineage4.6.1.1
|
None
|
SRR3742665
|
HR-TB
|
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
SRR28119717
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR3283019
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR9787139
|
Other
|
lineage6.3.1
|
None
|
ERR4811075
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1184388
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR1063839
|
MDR-TB
|
La2;lineage2.2
|
None
|
SRR1184298
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR26399973
|
Other
|
La3;lineage4.9
|
None
|
SRR5535933
|
Other
|
lineage4.9
|
None
|
ERR2026695
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3
|
None
|
SRR3675529
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR2026697
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR6044790
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR1165628
|
Other
|
La3;lineage4.9
|
None
|
SRR3675467
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1184312
|
Other
|
lineage2.2.1
|
None
|
SRR12708407
|
HR-TB
|
lineage4.3.2.1
|
None
|
SRR15368973
|
Other
|
lineage4.9
|
None
|
SRR3675216
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4769521
|
RR-TB
|
lineage4.9
|
None
|
ERR4821655
|
HR-TB
|
lineage4.9
|
None
|
SRR13423649
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6046783
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR4798504
|
RR-TB
|
lineage3
|
None
|
ERR3445503
|
Other
|
La1.7.1;La1.7.X-unk4
|
None
|
SRR5341470
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
ERR294266
|
HR-TB
|
lineage4.2;lineage4.8.1;lineage4.9
|
None
|
SRR3675248
|
Other
|
lineage4.9
|
None
|
ERR9786515
|
Other
|
lineage4.1.2.1
|
None
|
ERR3797043
|
Sensitive
|
lineage4.9
|
None
|
SRR1184380
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR29096150
|
Other
|
lineage4.9
|
None
|
SRR6045399
|
Other
|
M.canetti;lineage4.9
|
None
|
SRR23961542
|
Other
|
La1;lineage4.9
|
None
|
ERR4800341
|
Other
|
lineage3
|
None
|
SRR28119777
|
Other
|
lineage4.9
|
None
|
ERR176643
|
Other
|
La3;lineage4.9
|
None
|
ERR736859
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6046594
|
Sensitive
|
lineage4.9
|
None
|
ERR9786611
|
HR-TB
|
lineage4.1.3
|
None
|
SRR1172817
|
Other
|
La3
|
None
|
SRR1173400
|
Other
|
lineage4.9
|
None
|
SRR12416840
|
MDR-TB
|
lineage4.9
|
None
|
ERR3797046
|
HR-TB
|
lineage4.9
|
None
|
SRR29017461
|
Other
|
La3;lineage4.9
|
None
|
ERR1334034
|
Other
|
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3
|
None
|
ERR9787153
|
Other
|
lineage6.1.3
|
None
|
ERR9786645
|
Other
|
lineage4.6.2.2
|
None
|
SRR3675311
|
Other
|
lineage4.9
|
None
|
SRR6045887
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR6359082
|
Other
|
lineage4.9
|
None
|
SRR6046485
|
Other
|
lineage4.9
|
None
|
SRR7131023
|
Other
|
lineage4.1.2.1
|
None
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
SRR6046026
|
RR-TB
|
lineage4.2;lineage4.9
|
None
|
SRR14066533
|
Sensitive
|
lineage1.1.1
|
None
|
ERR9119500
|
MDR-TB
|
lineage5.2
|
None
|
SRR3675221
|
Other
|
lineage4.9
|
None
|
ERR987722
|
MDR-TB
|
|
None
|
ERR234659
|
Other
|
|
None
|
SRR29093105
|
Other
|
lineage2.2.2;lineage4
|
None
|
SRR6046295
|
HR-TB
|
lineage4.2;lineage4.9
|
None
|
ERR3283055
|
HR-TB
|
lineage4.9
|
None
|
ERR7911670
|
XDR-TB
|
M.canetti;lineage2.2
|
None
|
SRR1180226
|
HR-TB
|
lineage4.9
|
None
|
SRR29231479
|
RR-TB
|
lineage4.9
|
None
|
ERR4819781
|
Other
|
lineage2.2.1
|
None
|
ERR736865
|
HR-TB
|
lineage4.3.2;lineage4.9
|
None
|
SRR6785227
|
Other
|
lineage2.2.1
|
None
|
SRR3675572
|
Other
|
|
None
|
SRR5341333
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4818615
|
Sensitive
|
|
None
|
ERR4830088
|
Sensitive
|
lineage4.8
|
None
|
ERR6866807
|
Other
|
lineage4.9
|
None
|
SRR3675465
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR1063858
|
HR-TB
|
lineage4.9
|
None
|
SRR6045242
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR3283042
|
Other
|
lineage4.9
|
None
|
ERR3283027
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR9786569
|
Other
|
lineage4.8
|
None
|
SRR3675508
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4810741
|
HR-TB
|
La3;lineage2.1;lineage6.3
|
None
|
ERR4810624
|
MDR-TB
|
lineage2.2
|
None
|
ERR4817893
|
Other
|
La3;lineage4.8
|
None
|
ERR736817
|
HR-TB
|
lineage4.3.4
|
None
|
SRR3742657
|
Pre-XDR-TB
|
La3;M.canetti;lineage2.2.1
|
None
|
ERR736871
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR736874
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
SRR1173629
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4819932
|
Other
|
lineage4.7
|
None
|
ERR9117721
|
HR-TB
|
La3;lineage1.1.2
|
None
|
ERR473277
|
HR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR20969708
|
HR-TB
|
lineage2.2
|
None
|
SRR3675492
|
Other
|
La1.7;lineage4.9
|
None
|
ERR3797028
|
HR-TB
|
M.canetti;lineage4.9
|
None
|
ERR736863
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR14801759
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SRR3675574
|
Other
|
lineage4.6.3;lineage4.9;lineage6.3
|
None
|
SRR3675267
|
Other
|
La1.7;lineage4.9
|
None
|
SRR6045526
|
Other
|
lineage4.9
|
None
|
SRR18910194
|
HR-TB
|
lineage2.2.2
|
None
|
ERR2027263
|
Other
|
lineage4
|
None
|
SRR21733183
|
RR-TB
|
lineage1.1.2
|
None
|
ERR2513470
|
Other
|
lineage4.2.2.2
|
None
|
SRR6045219
|
HR-TB
|
lineage4.9
|
None
|
SRR6789626
|
Other
|
|
None
|
ERR4872119
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR4798648
|
MDR-TB
|
lineage3.1.2.2
|
None
|
SRR1196474
|
Other
|
lineage3.1.1
|
None
|
SRR1196546
|
Other
|
lineage4.9
|
None
|
SRR6511621
|
Sensitive
|
lineage4.9
|
None
|
ERR1063862
|
HR-TB
|
lineage4.9
|
None
|
ERR4811311
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6785268
|
Sensitive
|
lineage4.2.1
|
None
|
ERR1063859
|
HR-TB
|
La1.7.1;lineage4.9
|
None
|
SRR6044942
|
HR-TB
|
lineage4.9
|
None
|
SRR1165699
|
Other
|
lineage4.9
|
None
|
SRR7535086
|
Other
|
|
None
|
SRR1172728
|
RR-TB
|
La3
|
None
|
ERR4872094
|
MDR-TB
|
lineage5.2
|
None
|
ERR1063849
|
HR-TB
|
lineage4.9
|
None
|
SRR3675449
|
Other
|
M.canetti;lineage4.9
|
None
|
SRR14782405
|
HR-TB
|
lineage4.9
|
None
|
SRR7496509
|
Other
|
|
None
|
ERR13265748
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR4831117
|
HR-TB
|
lineage4.9;lineage7
|
None
|
ERR3797086
|
Sensitive
|
lineage4.9
|
None
|
SRR6045519
|
MDR-TB
|
M.canetti;lineage4.9
|
None
|
SRR12708389
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR323043
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4799513
|
HR-TB
|
lineage2.2
|
None
|
SRR1184346
|
HR-TB
|
lineage3.1
|
None
|
ERR6358991
|
HR-TB
|
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3
|
None
|
ERR9787030
|
RR-TB
|
lineage6.1.2
|
None
|
SRR3675490
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4800527
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4811493
|
HR-TB
|
lineage4.9
|
None
|
ERR11252558
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
ERR9786843
|
Other
|
|
None
|
SRR1184381
|
MDR-TB
|
|
None
|
ERR11252664
|
Other
|
lineage2.2.1
|
None
|
SRR26159047
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
ERR2514692
|
Other
|
|
None
|
ERR212033
|
Other
|
lineage4.9
|
None
|
SRR6789621
|
Other
|
lineage4.9
|
None
|
ERR4814352
|
Other
|
lineage2.2.1
|
None
|
SRR28119756
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR9786525
|
Other
|
lineage4.1;lineage4.8
|
None
|
SRR12006550
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR9786604
|
Other
|
|
None
|
SRR1165667
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR4831545
|
XDR-TB
|
M.canetti;lineage2.2
|
None
|
ERR502524
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
SRR3675232
|
Other
|
lineage4.1.2.1
|
None
|
SRR3675505
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR23961558
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR29096410
|
Other
|
lineage4.9
|
None
|
ERR4828872
|
Sensitive
|
lineage4.2;lineage4.9
|
None
|
SRR1173778
|
Other
|
lineage4.9
|
None
|
ERR4818021
|
Other
|
La1.2.BCG;La1.8.1
|
None
|
ERR9786986
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR1196583
|
Other
|
lineage4.9
|
None
|
SRR3675571
|
HR-TB
|
M.canetti;lineage4.2;lineage4.9
|
None
|
SRR3675275
|
Other
|
lineage4.9
|
None
|
SRR3675385
|
Other
|
La1.7;lineage4.9
|
None
|