Rv0005 - c.999G>A


Drug resistance types
16 Sensitive 8 RR-TB 69 HR-TB 27 MDR-TB 3 Pre-XDR-TB 3 XDR-TB 150 Other
lineage Counts
lineage Count
18
lineage3.1.2.1;lineage3.1.2.2 1
La3;lineage2 1
La3;lineage2.2.1 1
M.canetti;lineage2.2.2;lineage6.2 2
lineage4.9 65
lineage4.1.1.3 2
lineage2.2.1 14
M.canetti;lineage2.1;lineage4.9 2
lineage2.1;lineage6.3 2
La1.7;lineage4.9 6
La3;lineage2.1;lineage4.9;lineage6.3 4
La2;lineage4.9 2
lineage4.8 3
lineage4.2.1 2
lineage4.9;lineage9 2
lineage2.2.1;lineage6.3 1
lineage4.6.2.2 5
lineage3 3
lineage2.1;lineage4.1.4;lineage4.9 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.1.2.1 10
lineage4.1.1.1 1
lineage4.9;lineage6.3 9
lineage4.3.2 1
lineage4 2
La2;lineage4.9;lineage9 1
lineage1.2.2.2 1
lineage4.1.3 2
lineage4.3.4.1 1
lineage2.1 3
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage2.1;lineage4.9 14
lineage4.4.1.2 1
lineage2.1;lineage4.9;lineage6.3 11
La3;lineage2.1;lineage4.9 2
M.canetti;lineage2.1;lineage6.3 1
lineage4.2;lineage4.8.1;lineage4.9 2
La1.7;lineage4.2 1
La1.2.BCG 1
M.canetti;lineage4.9 5
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La1.7;M.canetti;lineage4.9 4
La3;lineage4.9 6
lineage5.2 3
lineage6.1.3 2
lineage3.1;lineage9 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage4.6.1.1 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage6.3.1 1
La2;lineage2.2 1
lineage4.3.3 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage4.3.2.1 1
La1.7.1;La1.7.X-unk4 1
La1;lineage4.9 1
La3 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.2;lineage4.9 3
lineage1.1.1 1
lineage2.2.2;lineage4 1
M.canetti;lineage2.2 2
lineage4.3.2;lineage4.9 1
La3;lineage2.1;lineage6.3 1
lineage2.2 3
La3;lineage4.8 1
lineage4.3.4 1
La3;M.canetti;lineage2.2.1 1
lineage4.7 1
La3;lineage1.1.2 1
La3;M.canetti;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage2.2.2 1
lineage1.1.2 1
lineage4.2.2.2 1
lineage3.1.2.2 1
lineage3.1.1 1
La1.7.1;lineage4.9 1
lineage4.9;lineage7 1
lineage4.8.1 1
lineage3.1 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage6.1.2 1
lineage4.6.3;lineage4.9 2
lineage4.1;lineage4.8 1
lineage1.2.1.2 1
La1.2.BCG;La1.8.1 1
M.canetti;lineage4.2;lineage4.9 1
spoligotype Counts
spoligotype Count
None 276
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR18213713 HR-TB None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None
SRR20969677 HR-TB La3;lineage2 None
SRR29055629 MDR-TB La3;lineage2.2.1 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR3675214 Other lineage4.9 None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR4817896 HR-TB lineage2.2.1 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9119669 HR-TB lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR3675501 Other La1.7;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR323039 HR-TB La2;lineage4.9 None
SRR20969731 Other lineage2.2.1 None
ERR323107 Sensitive lineage4.9 None
ERR4799025 Other lineage4.8 None
SRR6785262 Sensitive lineage4.2.1 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4815604 Other None
ERR1035157 Other lineage4.9 None
SRR14782054 Other lineage4.9 None
ERR181887 Other lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR2446566 Other lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
SRR6045347 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR9119525 MDR-TB lineage4.6.2.2 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
ERR4797588 MDR-TB lineage3 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6785263 Sensitive lineage2.2.1 None
SRR3675236 Other None
ERR176793 Other lineage4.1.1.1 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR9117805 Other lineage4.3.2 None
ERR3283044 Other lineage4 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR4797201 Other lineage1.2.2.2 None
ERR108471 HR-TB lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR4816466 HR-TB lineage4.9 None
ERR9786711 Sensitive lineage4.6.2.2 None
SRR13583478 HR-TB lineage4.3.4.1 None
ERR702406 Other lineage2.1 None
ERR9117709 Other None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR3675549 Other lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
SRR1172234 Other lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR4798493 MDR-TB lineage2.2.1 None
SRR1183111 HR-TB lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR23961559 Other La1.7;lineage4.2 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR1184294 Other lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR3804155 Other lineage4.1.2.1 None
SRR6045233 Other M.canetti;lineage4.9 None
ERR3797070 Other lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR11252612 Other La3;lineage4.9 None
ERR9787197 Other None
SRR28119805 Other lineage4.9 None
ERR2706950 MDR-TB lineage5.2 cd
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR181824 HR-TB lineage4.9 None
ERR502908 HR-TB lineage2.2.1 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786671 Other None
SRR12142341 HR-TB lineage2.1 None
ERR3801503 Sensitive lineage4.6.2.2 None
ERR9786421 Other lineage4.1.2.1 None
ERR736875 HR-TB lineage4.9 None
SRR6045555 Other lineage4.9 None
SRR1167384 Other La3;lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR13265528 Other lineage4.9;lineage6.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR4407463 HR-TB None
ERR9787165 Other lineage6.1.3 None
SRR1172951 Other lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR176651 Other lineage4.9 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR29097026 Other lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR6785267 Other lineage2.2.1 None
ERR6358755 Other lineage4.6.1.1 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR26399973 Other La3;lineage4.9 None
SRR5535933 Other lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR1165628 Other La3;lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184312 Other lineage2.2.1 None
SRR12708407 HR-TB lineage4.3.2.1 None
SRR15368973 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
ERR4821655 HR-TB lineage4.9 None
SRR13423649 Sensitive lineage2.2.1 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR4798504 RR-TB lineage3 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR3675248 Other lineage4.9 None
ERR9786515 Other lineage4.1.2.1 None
ERR3797043 Sensitive lineage4.9 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR29096150 Other lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
SRR23961542 Other La1;lineage4.9 None
ERR4800341 Other lineage3 None
SRR28119777 Other lineage4.9 None
ERR176643 Other La3;lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046594 Sensitive lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR1172817 Other La3 None
SRR1173400 Other lineage4.9 None
SRR12416840 MDR-TB lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
SRR29017461 Other La3;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR9787153 Other lineage6.1.3 None
ERR9786645 Other lineage4.6.2.2 None
SRR3675311 Other lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR6359082 Other lineage4.9 None
SRR6046485 Other lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
SRR11662690 HR-TB lineage4.9 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
SRR14066533 Sensitive lineage1.1.1 None
ERR9119500 MDR-TB lineage5.2 None
SRR3675221 Other lineage4.9 None
ERR987722 MDR-TB None
ERR234659 Other None
SRR29093105 Other lineage2.2.2;lineage4 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR1180226 HR-TB lineage4.9 None
SRR29231479 RR-TB lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
SRR6785227 Other lineage2.2.1 None
SRR3675572 Other None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR4818615 Sensitive None
ERR4830088 Sensitive lineage4.8 None
ERR6866807 Other lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR1063858 HR-TB lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR3283042 Other lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR9786569 Other lineage4.8 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR4810624 MDR-TB lineage2.2 None
ERR4817893 Other La3;lineage4.8 None
ERR736817 HR-TB lineage4.3.4 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR4819932 Other lineage4.7 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR20969708 HR-TB lineage2.2 None
SRR3675492 Other La1.7;lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR14801759 HR-TB La1.7;lineage4.9 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR3675267 Other La1.7;lineage4.9 None
SRR6045526 Other lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
ERR2027263 Other lineage4 None
SRR21733183 RR-TB lineage1.1.2 None
ERR2513470 Other lineage4.2.2.2 None
SRR6045219 HR-TB lineage4.9 None
SRR6789626 Other None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4798648 MDR-TB lineage3.1.2.2 None
SRR1196474 Other lineage3.1.1 None
SRR1196546 Other lineage4.9 None
SRR6511621 Sensitive lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6785268 Sensitive lineage4.2.1 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
SRR1165699 Other lineage4.9 None
SRR7535086 Other None
SRR1172728 RR-TB La3 None
ERR4872094 MDR-TB lineage5.2 None
ERR1063849 HR-TB lineage4.9 None
SRR3675449 Other M.canetti;lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
SRR7496509 Other None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR3797086 Sensitive lineage4.9 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
SRR1184346 HR-TB lineage3.1 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR9787030 RR-TB lineage6.1.2 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4800527 MDR-TB lineage2.2.1 None
ERR4811493 HR-TB lineage4.9 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
ERR9786843 Other None
SRR1184381 MDR-TB None
ERR11252664 Other lineage2.2.1 None
SRR26159047 Other lineage4.6.3;lineage4.9 None
ERR2514692 Other None
ERR212033 Other lineage4.9 None
SRR6789621 Other lineage4.9 None
ERR4814352 Other lineage2.2.1 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR9786525 Other lineage4.1;lineage4.8 None
SRR12006550 Sensitive lineage1.2.1.2 None
ERR9786604 Other None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
SRR3675232 Other lineage4.1.2.1 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
SRR29096410 Other lineage4.9 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
SRR1173778 Other lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR9786986 HR-TB lineage4.1.2.1 None
SRR1196583 Other lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
SRR3675275 Other lineage4.9 None
SRR3675385 Other La1.7;lineage4.9 None