Rv0005 - c.999G>A


Drug resistance types
17 Sensitive 3 RR-TB 124 HR-TB 18 MDR-TB 8 Pre-XDR-TB 0 XDR-TB 99 Other
lineage Counts
lineage Count
lineage4.1.1.3 1
127
lineage2.2.1 17
lineage4.1.2.1 10
lineage4.3 1
lineage4 14
lineage4.9 23
lineage4.8 3
lineage2.2 10
lineage4.8;La3 1
lineage4.2.2.2 1
La1.8.1 2
lineage4.1 1
lineage4.7 2
lineage5.2 3
lineage4.6.2.2 5
lineage4.2.1 2
La2 1
lineage4.4.1.2 1
La1 2
lineage2 3
lineage4.1.3 2
La1.2 2
lineage3 3
lineage1.2.2.2 1
lineage3.1.2 1
lineage4.3.4 1
lineage4.6.1.1 1
lineage1.1.2 2
lineage4.3.2 1
lineage6.3.1 1
lineage4.8;lineage4.1 1
lineage6 2
lineage6.1.3 1
La3 1
lineage3.1.2.2;lineage3.1.2.1 1
lineage4.4.1.1 1
lineage4.3.3 3
lineage3.1 2
lineage4.3.4.1 1
lineage1.2.1.2 1
lineage1.1.1 1
lineage4.5 1
lineage4.9;La3 1
lineage9;lineage3.1 1
lineage4.9;La1 1
lineage6.3;lineage4.9;lineage2.1 1
lineage4.9;lineage4.6.3 1
lineage6.3;lineage2.2.1 1
lineage4.2;La1.7 1
lineage4.1.1 1
spoligotype Counts
spoligotype Count
None 269
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR550636 MDR-TB lineage4.1.1.3 None
SRR3675465 HR-TB None
ERR4814352 HR-TB lineage2.2.1 None
SRR3675236 HR-TB None
SRR3675221 HR-TB None
SRR3675222 Other None
SRR3675488 HR-TB None
SRR3675501 HR-TB None
ERR181887 HR-TB None
SRR3675232 Other lineage4.1.2.1 None
ERR176568 Other lineage4.3 None
ERR181824 HR-TB lineage4 None
SRR3675311 Other None
ERR176643 HR-TB None
ERR176740 HR-TB None
ERR176651 HR-TB None
SRR3675510 Other None
ERR176751 HR-TB None
ERR212001 HR-TB None
ERR4816999 Other None
ERR2027263 Other lineage4 None
ERR4817037 Other lineage4.9 None
SRR3675572 Other None
ERR4817060 RR-TB None
ERR212033 HR-TB None
ERR4817735 Other lineage4.8 None
ERR212125 HR-TB lineage4 None
SRR3675574 HR-TB None
SRR3675571 HR-TB None
ERR4816466 HR-TB None
ERR4816585 Other lineage2.2 None
SRR3742665 HR-TB None
ERR4817896 HR-TB lineage2.2.1 None
ERR4817893 Other lineage4.8;La3 None
ERR2513470 Other lineage4.2.2.2 None
ERR234659 HR-TB None
ERR4818021 Other La1.8.1 None
ERR2446566 Other lineage4.1 None
SRR5341456 Other None
ERR4818607 Sensitive lineage4.9 None
ERR4818615 Other None
SRR5341302 HR-TB None
ERR4819781 Other lineage2.2.1 None
ERR2514692 Other None
SRR5341333 HR-TB None
ERR4819932 Other lineage4.7 None
ERR2706950 MDR-TB lineage5.2 cd
SRR6045503 HR-TB None
ERR6359082 Other lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
ERR2693238 HR-TB lineage4.9 None
SRR5341470 HR-TB None
SRR6045450 Other lineage4.9 None
SRR6045519 HR-TB None
SRR6045526 HR-TB None
ERR4821655 Sensitive lineage4 None
SRR5535933 HR-TB None
SRR6045555 HR-TB None
SRR6044790 HR-TB None
SRR6046133 HR-TB None
SRR6046066 HR-TB None
SRR6044855 Other lineage4.9 None
SRR6045233 HR-TB None
SRR6044838 Other lineage4.9 None
SRR6044875 HR-TB lineage4.9 None
SRR6045327 HR-TB None
SRR6046253 HR-TB lineage4.9 None
SRR6046225 HR-TB None
SRR6045399 Other None
SRR6046594 HR-TB lineage4 None
SRR6046259 Sensitive lineage4.9 None
SRR6046305 Other lineage4.9 None
ERR4830088 Sensitive lineage4.8 None
SRR6046540 HR-TB None
SRR6458423 HR-TB lineage2.2.1 None
ERR4872094 MDR-TB lineage5.2 None
SRR6511621 HR-TB None
ERR4831117 HR-TB None
ERR4831546 HR-TB lineage2.2 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4831545 Pre-XDR-TB lineage2.2 None
SRR6785268 Sensitive lineage4.2.1 None
SRR6785263 Sensitive lineage2.2.1 None
SRR6785227 Other lineage2.2.1 None
SRR6785262 Sensitive lineage4.2.1 None
ERR502524 HR-TB La2 None
SRR6785267 Other lineage2.2.1 None
ERR294266 HR-TB None
SRR6789626 Other None
ERR502532 HR-TB None
SRR8217918 HR-TB None
ERR502908 HR-TB lineage2.2.1 None
SRR7131023 Other lineage4.1.2.1 None
SRR7496517 Other None
SRR7496509 Other None
SRR7496523 Other lineage4.7 None
ERR323043 HR-TB None
SRR7585435 Other lineage4.9 None
SRR7535086 Other None
ERR323039 HR-TB None
ERR1063862 HR-TB None
ERR323053 HR-TB None
ERR323056 HR-TB lineage4.4.1.2 None
ERR1035157 Other lineage4.9 None
ERR1063857 HR-TB None
ERR323107 Other lineage4 None
ERR1063839 HR-TB lineage2.2 None
ERR1063858 HR-TB None
ERR1063896 Sensitive None
ERR1063859 HR-TB None
ERR3283055 HR-TB None
ERR3283010 Other La1 None
ERR3283027 HR-TB None
ERR108471 HR-TB lineage4 None
ERR3283025 HR-TB None
ERR3283036 HR-TB None
ERR3283051 Other lineage4.9 None
ERR3801503 Sensitive lineage4.6.2.2 None
ERR3797036 HR-TB None
ERR3797058 Other lineage4.9 None
ERR3797069 Other None
ERR3797086 Other lineage4.9 None
ERR3445503 HR-TB None
ERR5336148 Other None
ERR3797043 HR-TB None
ERR3797046 HR-TB None
ERR4797054 Pre-XDR-TB lineage2 None
ERR3804155 Other lineage4.1.2.1 None
ERR3804169 HR-TB lineage4.1.3 None
ERR4407463 HR-TB None
ERR4769497 HR-TB La1.2 None
ERR4769457 Other lineage4.9 None
ERR4769521 HR-TB None
ERR4800341 Other lineage3 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4799025 Pre-XDR-TB None
ERR4797201 Other lineage1.2.2.2 None
ERR4797588 MDR-TB lineage3 None
ERR4798262 HR-TB La1 None
ERR4798504 Other lineage3 None
ERR4798648 HR-TB lineage3.1.2 None
ERR4799513 HR-TB lineage2.2 None
ERR736817 HR-TB lineage4.3.4 None
ERR4800527 MDR-TB lineage2.2.1 None
ERR4810624 HR-TB lineage2.2 None
ERR4810741 HR-TB None
ERR4811142 MDR-TB None
ERR6198317 Other La1.2 None
ERR6358755 Other lineage4.6.1.1 None
ERR6866807 HR-TB lineage4 None
ERR702404 HR-TB None
ERR4811022 HR-TB None
ERR4811105 HR-TB None
ERR4811493 HR-TB None
ERR6358991 HR-TB None
ERR6359045 HR-TB None
ERR702406 HR-TB None
ERR736867 HR-TB None
ERR736865 HR-TB None
ERR7821163 Other lineage2.2.1 None
ERR736875 HR-TB lineage4 None
ERR736874 HR-TB None
ERR7911670 Pre-XDR-TB lineage2.2 None
ERR9786421 Other lineage4.1.2.1 None
ERR9119525 MDR-TB lineage4.6.2.2 None
SRR21733183 RR-TB lineage1.1.2 None
ERR9117709 HR-TB None
ERR9117721 HR-TB lineage1.1.2 None
ERR9117805 Other lineage4.3.2 None
ERR9119500 MDR-TB lineage5.2 None
ERR9119669 HR-TB None
ERR9787139 Other lineage6.3.1 None
ERR9786525 Other lineage4.8;lineage4.1 None
ERR9786604 Other None
ERR9786671 Other None
ERR9786694 Other lineage4.1.2.1 None
ERR9786711 Sensitive lineage4.6.2.2 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR9787165 Other lineage6 None
ERR9786515 Other lineage4.1.2.1 None
ERR9786569 Other lineage4.8 None
ERR9786611 HR-TB lineage4.1.3 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786642 Other lineage4.1.2.1 None
ERR9786645 Other lineage4.6.2.2 None
ERR9786843 Other None
ERR9787030 Sensitive lineage6 None
ERR9787153 Other lineage6.1.3 None
SRR1169306 Other None
SRR10808399 Sensitive lineage4 None
SRR1169249 Other La3 None
ERR9787197 Other None
ERR987722 HR-TB None
ERR987729 HR-TB lineage3.1.2.2;lineage3.1.2.1 None
SRR1167384 Other lineage4 None
SRR1169194 Other None
SRR1172146 Sensitive lineage4.9 None
SRR1172817 HR-TB None
SRR1172234 Other None
SRR1172310 HR-TB None
SRR1172728 MDR-TB None
SRR1172951 Other None
SRR1172844 MDR-TB lineage4.4.1.1 None
SRR1172857 MDR-TB None
SRR1173218 Pre-XDR-TB lineage4.3.3 None
SRR1173118 Other None
SRR1173153 HR-TB None
SRR1173384 Other lineage4 None
SRR1173363 HR-TB None
SRR1173484 Other lineage4 None
SRR1173400 Other None
SRR1173562 HR-TB lineage4 None
SRR1173629 Other None
SRR1173633 HR-TB lineage4.9 None
SRR1173778 Other None
SRR1173706 Other lineage4.9 None
SRR1181020 Other lineage2.2.1 None
SRR1175049 RR-TB None
SRR1175090 Other lineage4.9 None
SRR1173788 Other None
SRR1174897 HR-TB None
SRR1181289 Other lineage2.2.1 None
SRR1183144 Other lineage2.2.1 None
SRR1183049 Other lineage2.2 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR1184294 HR-TB None
SRR1184372 MDR-TB None
SRR1184312 HR-TB lineage2.2.1 None
SRR1184346 HR-TB lineage3.1 None
SRR1184381 MDR-TB None
SRR1196546 HR-TB None
SRR1184388 Other None
SRR1196474 HR-TB lineage3.1 None
SRR1196494 MDR-TB None
SRR1184380 HR-TB None
SRR1196566 HR-TB None
SRR1196571 Pre-XDR-TB lineage4.3.3 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR1196768 MDR-TB None
SRR12142341 HR-TB None
SRR13423649 Sensitive lineage2.2.1 None
SRR1196677 HR-TB lineage2 None
SRR12006550 Other lineage1.2.1.2 None
SRR12416840 MDR-TB lineage4.9 None
SRR12416824 HR-TB None
SRR1791747 Other La1.8.1 None
SRR13837827 Sensitive lineage4.9 None
SRR14066533 Sensitive lineage1.1.1 None
SRR14782405 HR-TB None
SRR14801749 Sensitive None
SRR15368973 Other None
SRR20969677 HR-TB lineage2 None
SRR19303884 HR-TB None
SRR18213713 HR-TB lineage4.5 None
SRR18910194 HR-TB lineage2.2 None
SRR19304036 HR-TB None
SRR20969731 Other lineage2.2.1 None
SRR26399973 Other lineage4.9;La3 None
SRR20969708 HR-TB lineage2.2 None
SRR25827418 Pre-XDR-TB lineage9;lineage3.1 None
SRR23961542 Other lineage4.9;La1 None
ERR4815604 HR-TB None
SRR23961558 Other lineage6.3;lineage4.9;lineage2.1 None
SRR26159047 Other lineage4.9;lineage4.6.3 None
SRR28119811 Other lineage6.3;lineage2.2.1 None
SRR23961559 Other lineage4.2;La1.7 None
ERR176779 HR-TB None
ERR176778 HR-TB None
ERR176793 Other lineage4.1.1 None