Rv0006 - c.-560A>G


Drug resistance types
41 Sensitive 10 RR-TB 86 HR-TB 35 MDR-TB 8 Pre-XDR-TB 1 XDR-TB 144 Other
lineage Counts
lineage Count
lineage4.1.2.1 8
lineage4.9 94
lineage1.1.1 1
La1.7;lineage4.9 2
M.canetti;lineage2.1;lineage4.9;lineage6.3 4
22
lineage2.2.1 13
La1;lineage4.9 1
lineage4.9;lineage6.3 7
lineage4.9;lineage7 5
lineage4.7 2
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
M.canetti;lineage2.1;lineage4.9 17
lineage4.3.3 4
La3;M.canetti;lineage4.8;lineage4.9 1
La1.8.1 2
La1.2.BCG;La1.8.1 1
lineage2.1;lineage4.9 20
lineage4.6.1.1 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage4.8 1
lineage2.2.1.2 1
lineage4.3.4.2.1 1
La3;lineage2.1;lineage4.9 2
lineage4.6.4 2
La3;lineage4.9 2
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage2.1 5
La3;lineage1.1.2 1
lineage4.3.1;lineage4.9;lineage6 1
La3;M.canetti;lineage2.1;lineage4.9 12
lineage2.2.1;lineage4 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 5
lineage4.8 2
lineage2.2.1;lineage3 1
lineage3 3
lineage2.1;lineage4.9;lineage6.3 8
lineage4 3
La3 2
La1.7.1;La1.7.X-unk4;lineage7 1
lineage4.6.2.2 1
lineage2.2.1;lineage4.9 2
La1.2.BCG 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.3.2.1 2
lineage4.4.1.1.1 2
La3;M.canetti;lineage4.9 2
La3;lineage2.1;lineage6.3 1
La3;lineage2 1
lineage6.3.1 1
La3;lineage2.2.1 1
La2;lineage2.2 1
La3;M.canetti;lineage2.1;lineage3.1 1
lineage2.1;lineage4.3.2 1
lineage4.2.1 1
La2;lineage4.9 1
lineage2.2.2 1
lineage2.2.1;lineage6.3 1
lineage1.2.2.2 2
lineage4.3.2 1
lineage4.1.1.3 3
lineage4.1.3 2
lineage2.1;lineage6.3 2
lineage4.4.1.2 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
M.canetti;lineage2.1;lineage6.3 1
lineage3.1 1
lineage2.1;lineage2.2;lineage6.3 1
La1.7;lineage4.9;lineage7 2
lineage2.2.1.1 1
La3;M.canetti;lineage3.1 1
La1.7;M.canetti;lineage4.9 1
lineage2.1;lineage4.9;lineage7 1
lineage3.1.2.1;lineage4 1
lineage4.9;lineage6.1.3 1
La3;lineage2.1;lineage4.9;lineage6.3 3
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 1
lineage4.5 1
La3;M.canetti;lineage2.2.1 1
La1.7.1 1
lineage2.2 1
La1.2;La1.8.1 1
lineage4.2.2.2 1
lineage4.1.1.1 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage4.9 1
lineage4.8.1 1
La1.4 1
spoligotype Counts
spoligotype Count
None 325
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR7131023 Other lineage4.1.2.1 None
SRR11662690 HR-TB lineage4.9 None
ERR3797070 Other lineage4.9 None
SRR14066533 Sensitive lineage1.1.1 None
ERR176560 HR-TB La1.7;lineage4.9 None
SRR3675221 Other lineage4.9 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR234659 Other None
ERR4814352 Other lineage2.2.1 None
ERR4769497 Other La1;lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR3675539 HR-TB lineage4.9;lineage7 None
SRR1184372 MDR-TB None
SRR7496523 Other lineage4.7 None
SRR9971270 RR-TB lineage2.2.1 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR6046382 Sensitive lineage2.2.1 None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR6046141 Other lineage4.9 None
ERR13265528 Other lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR21732980 Other lineage4.3.3 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3797023 HR-TB La1.8.1 None
ERR4796577 HR-TB None
ERR926157 Sensitive lineage4.9 None
SRR1173778 Other lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR4769444 HR-TB lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797029 Other lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR29016780 Other lineage4.9 None
ERR6358755 Other lineage4.6.1.1 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR4817893 Other La3;lineage4.8 None
ERR387051 Other lineage4.9 None
ERR4799989 Pre-XDR-TB lineage2.2.1.2 None
ERR161034 HR-TB lineage4.3.4.2.1 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
ERR9119508 MDR-TB lineage4.6.4 None
SRR26399973 Other La3;lineage4.9 None
ERR4819932 Other lineage4.7 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR3416776 Other lineage2.1 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR7496517 Other None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675495 Other lineage2.1;lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR736848 Other lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6046492 Other lineage4.9 None
SRR10315751 MDR-TB lineage4.8 None
ERR6359066 HR-TB lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR3675216 Other lineage2.1;lineage4.9 None
SRR5341330 Other lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4816470 HR-TB lineage3 None
ERR4797588 MDR-TB lineage3 None
SRR12708392 Other lineage2.2.1 None
ERR4820854 Other lineage4.1.2.1 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3283021 HR-TB lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
SRR1181349 Sensitive lineage4 None
SRR7535086 Other None
ERR926154 Sensitive lineage4.9 None
SRR1172728 RR-TB La3 None
ERR9117709 Other None
SRR3675549 Other lineage4.9 None
SRR6785527 Sensitive lineage2.2.1 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR473332 Other lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR3675456 RR-TB lineage4.9;lineage7 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4769452 Other lineage4.9 None
ERR9786645 Other lineage4.6.2.2 None
SRR3675311 Other lineage4.9 None
ERR5908228 RR-TB lineage4.3.3 None
SRR7496472 Other lineage4.9 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
SRR5341456 Other lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184381 MDR-TB None
ERR212001 HR-TB None
ERR9787197 Other None
SRR28119805 Other lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786671 Other None
SRR12142341 HR-TB lineage2.1 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR12708396 MDR-TB lineage4.3.2.1 None
SRR1180312 Sensitive lineage4.9 None
ERR9786604 Other None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
ERR4815752 Other lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR1175513 Sensitive lineage4.9 None
SRR1196566 Other lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR6045832 Other lineage4.9 None
ERR926155 Sensitive lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR4407463 HR-TB None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1196768 MDR-TB None
ERR3468607 Other lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR5341373 Other lineage4.9 None
SRR3675275 Other lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
SRR1710057 Other lineage2.1 None
SRR29055629 MDR-TB La3;lineage2.2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1180391 Sensitive lineage4.9 None
ERR4872102 MDR-TB lineage4.6.4 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
SRR18003019 Other lineage2.2.1 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
ERR9786682 Other lineage4.1.2.1 None
SRR1173355 Other lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR926162 Sensitive lineage4.9 None
ERR176741 Other lineage4.9 None
SRR1184114 Sensitive lineage2.2.1;lineage4.9 None
SRR12708418 HR-TB lineage2.2.1 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6785262 Sensitive lineage4.2.1 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
SRR12708407 HR-TB lineage4.3.2.1 None
ERR926160 Sensitive lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
ERR2027263 Other lineage4 None
ERR2446566 Other lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR4816999 Other None
ERR4769450 Other lineage4.9 None
ERR926161 Sensitive lineage4.9 None
SRR1196546 Other lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
SRR12708411 HR-TB lineage1.2.2.2 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR1791696 Other La1.8.1 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR926163 Other lineage4.9 None
ERR9117805 Other lineage4.3.2 None
ERR4797201 Other lineage1.2.2.2 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR11465025 Other lineage4.1.1.3 None
SRR1165699 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR4596910 Sensitive lineage4.9 None
ERR4800341 Other lineage3 None
ERR971389 Sensitive lineage4.9 None
ERR4769493 Other lineage4.9 None
SRR28119777 Other lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
ERR3797047 MDR-TB lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR1173400 Other lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
SRR29017461 Other La3;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR1184346 HR-TB lineage3.1 None
SRR1180413 Sensitive lineage4.9 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6079962 HR-TB lineage2.2.1.1 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR9119096 RR-TB lineage4.3.3 None
ERR9786642 Other lineage4.1.2.1 None
SRR20632814 Sensitive lineage4.9 None
SRR1173118 Other lineage2.2.1 None
SRR25827682 Other None
SRR1172857 Other None
SRR6789621 Other lineage4.9 None
ERR4817060 Other None
SRR28119752 Other lineage4.9 None
ERR4769442 Sensitive lineage4.9 None
ERR11465024 Other lineage4.1.1.3 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
ERR926156 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
ERR3445502 Sensitive lineage4.9;lineage7 None
ERR4819781 Other lineage2.2.1 None
SRR1173633 Other lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR926165 Sensitive lineage4.9 None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR1173363 Other None
SRR3675572 Other None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675457 Other lineage4.9 None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1180410 Sensitive lineage4.9 None
SRR28351455 Other lineage3.1.2.1;lineage4 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR1175506 Sensitive lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR9786569 Other lineage4.8 None
ERR752229 Other lineage4.5 None
SRR1196583 Other lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4769439 HR-TB lineage4.9 None
ERR4769417 Pre-XDR-TB lineage4.9 None
SRR18213713 HR-TB None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1180375 Sensitive lineage4.9 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR6045191 Sensitive lineage4.9 None
SRR12708413 HR-TB lineage4.1.1.3 None
ERR3797083 RR-TB lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045053 Other lineage4 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR20969708 HR-TB lineage2.2 None
SRR6046046 Other lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1184312 Other lineage2.2.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR1173384 Other lineage4.9 None
ERR1063855 Other lineage4.9 None
SRR6045347 Other lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR7240033 Other La1.2;La1.8.1 None
ERR2513470 Other lineage4.2.2.2 None
SRR6789626 Other None
ERR926158 Sensitive lineage4.9 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR1063846 HR-TB lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR3675236 Other None
ERR176793 Other lineage4.1.1.1 None
ERR926159 Sensitive lineage4.9 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4816466 HR-TB lineage4.9 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR702406 Other lineage2.1 None
ERR926164 Other lineage4.9 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR1172817 Other La3 None
SRR1172234 Other lineage4.9 None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR16278274 Other La1.4 None
SRR1181351 Sensitive lineage4.9 None
SRR1184294 Other lineage4.9 None