lineage | Count |
---|---|
161 | |
lineage4 | 45 |
lineage4.9 | 25 |
lineage2.2.1 | 19 |
lineage4.1.2.1 | 10 |
lineage4.2.1 | 1 |
lineage4.2.1.1 | 1 |
lineage1.1 | 1 |
lineage3.1 | 4 |
La2 | 1 |
lineage4.1.2 | 2 |
lineage2.2 | 2 |
La1 | 2 |
lineage4.8 | 7 |
La1.8.1 | 4 |
lineage4;lineage3.1 | 1 |
lineage2 | 4 |
lineage1.1.2 | 4 |
lineage3 | 4 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 2 |
lineage4.3.2 | 2 |
lineage4.3.4.2.1 | 1 |
lineage4.3.4.2 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage4.3.3 | 3 |
lineage4.4.1.1 | 3 |
lineage2.2.1.1 | 2 |
lineage4.5 | 2 |
lineage2.1 | 3 |
lineage4.2;La1.7 | 1 |
lineage2.2.1;La3 | 1 |
lineage4.9;La3 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.1.1 | 1 |
lineage4.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4.8;La3 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.1.1.2 | 1 |
lineage4.7 | 1 |
spoligotype | Count |
---|---|
None | 333 |
ID | Drug resistance | Lineage | Country iso2 | SRR6325444 | HR-TB | None | SRR6046397 | Other | None | SRR6046514 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6832249 | Other | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR294248 | HR-TB | None | ERR323036 | HR-TB | None | SRR6789626 | Other | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502889 | Other | None | ERR502532 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502908 | HR-TB | lineage2.2.1 | None | SRR7496517 | Other | None | SRR8217918 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7535086 | Other | None | ERR323038 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323043 | HR-TB | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323045 | HR-TB | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323053 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR323063 | HR-TB | None | ERR067681 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR1035157 | Other | lineage4.9 | None | ERR067699 | HR-TB | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063859 | HR-TB | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR133825 | Sensitive | lineage4 | None | ERR11049020 | Other | lineage4.8 | None | ERR133986 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3439432 | Other | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR363426 | Sensitive | lineage4 | None | ERR3468544 | HR-TB | None | ERR363445 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797036 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797069 | Other | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR405209 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4407463 | HR-TB | None | ERR4178226 | Sensitive | lineage4 | None | ERR4188247 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769521 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4798262 | HR-TB | La1 | None | ERR4810741 | HR-TB | None | ERR4798431 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4811022 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR4811105 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6358979 | Other | None | ERR6865502 | Sensitive | lineage4 | None | ERR6359045 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR736874 | HR-TB | None | ERR702406 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR736848 | HR-TB | None | ERR736865 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9117709 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR8976043 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786604 | Other | None | ERR9787197 | Other | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR1172146 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10808805 | Sensitive | None | SRR1162740 | Other | lineage4.1.2.1 | None | ERR987722 | HR-TB | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | SRR069989 | HR-TB | lineage2 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1172234 | Other | None | SRR1172310 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1173363 | HR-TB | None | SRR1173153 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173400 | Other | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1174897 | HR-TB | None | SRR1173629 | Other | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1175074 | MDR-TB | None | SRR1175049 | RR-TB | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184381 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196566 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1204000 | Sensitive | lineage2.2.1 | None | SRR1196768 | MDR-TB | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR13837677 | Sensitive | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13837613 | Sensitive | lineage4.9 | None | SRR13837796 | Sensitive | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861484 | RR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR15368973 | Other | None | SRR14801749 | Sensitive | None | SRR1710057 | Other | lineage2.1 | None | SRR1640750 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR17658565 | Other | lineage3 | None | SRR19303884 | HR-TB | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19304036 | HR-TB | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR25827682 | Other | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR20969677 | HR-TB | lineage2 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | ERR176778 | HR-TB | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR176779 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675465 | HR-TB | None | ERR1035239 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3416776 | Other | lineage2.1 | None | ERR176651 | HR-TB | None | SRR3675221 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | SRR3675311 | Other | None | SRR3675236 | HR-TB | None | ERR176751 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675510 | Other | None | SRR3675502 | Other | None | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | ERR2229542 | Other | lineage4.8 | None | SRR3675550 | Other | None | ERR4816151 | Other | lineage4.8 | None | SRR3675545 | HR-TB | None | ERR4817037 | Other | lineage4.9 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212121 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675558 | HR-TB | None | SRR3675572 | Other | None | ERR212125 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3675571 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4816585 | Other | lineage2.2 | None | ERR4817735 | Other | lineage4.8 | None | ERR4818021 | Other | La1.8.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035162 | Other | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR234659 | HR-TB | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4819051 | Other | lineage4 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR3275201 | Sensitive | lineage4.8 | nl | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341373 | HR-TB | lineage4 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341418 | Other | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | ERR1035138 | MDR-TB | None | ERR2514692 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | SRR5341313 | HR-TB | None | ERR1023509 | Other | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341333 | HR-TB | None | SRR5341315 | Sensitive | None | ERR4819932 | Other | lineage4.7 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2446570 | Sensitive | lineage4.8 | nl | ERR2693239 | HR-TB | None | SRR5341470 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR6045952 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | SRR6045526 | HR-TB | None | ERR278594 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045010 | Other | lineage4 | None | SRR6046066 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6325442 | HR-TB | None |
---|