Rv0668 - c.3789T>C


Drug resistance types
124 Sensitive 7 RR-TB 116 HR-TB 29 MDR-TB 15 Pre-XDR-TB 0 XDR-TB 159 Other
lineage Counts
lineage Count
lineage3.1 2
127
lineage4.9 106
lineage4.3.3 7
lineage4.3.4.1 1
lineage2 4
lineage1.1.2 5
lineage1.1.1 1
lineage4.2.1 4
La1.7.1 1
lineage2.1 3
lineage3 9
La1.8.1 3
lineage2.2.1 29
lineage4.5 3
lineage2.2 5
lineage4.1 3
lineage4.9;La3 1
lineage2.2.1;La3 1
lineage6.3;lineage4.9;lineage2.1 1
lineage6.3;lineage2.2.1 1
lineage3;lineage2.2.1 1
lineage4;lineage3;lineage2.2.1 1
lineage4 67
lineage4.1.1 2
lineage3;lineage2.1 1
lineage4.3.4.2.1 4
lineage4.1.2.1 13
lineage4.8 8
lineage4.4.1.1 2
lineage4.8;La3 1
lineage4.1.1.2 1
lineage4.2.2.2 1
lineage5.1.4 1
lineage4;lineage1.1 1
lineage4.6.2.2 1
lineage4.7 2
lineage4.9;lineage2.1 1
lineage2.2.1.1 2
lineage4.9.1 1
lineage4.1.2 2
lineage4.3.2.1 1
lineage4.1.2.1;lineage2.2.1 1
La1 2
lineage4.1.3 2
La1.2 1
lineage4.9;La1.3 1
lineage1.2.2.2 1
lineage4.6.1.1 1
lineage1.1.3.2 1
lineage4.3.2 1
lineage6.1.3 2
lineage6.3.1 1
lineage6 1
lineage2.2.1.2 2
lineage4.4.1.1.1 1
lineage4.9;lineage2.2 1
spoligotype Counts
spoligotype Count
None 450
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1184346 HR-TB lineage3.1 None
SRR1184372 MDR-TB None
SRR1184381 MDR-TB None
SRR1184380 HR-TB None
SRR1184388 Other None
SRR1196494 MDR-TB None
SRR1196474 HR-TB lineage3.1 None
SRR13837442 Sensitive lineage4.9 None
SRR1196546 HR-TB None
SRR1196566 HR-TB None
SRR1196571 Pre-XDR-TB lineage4.3.3 None
SRR12416840 MDR-TB lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR13837424 Sensitive lineage4.9 None
SRR1196677 HR-TB lineage2 None
SRR1196768 MDR-TB None
SRR12142341 HR-TB None
SRR13861153 Other lineage4.9 None
SRR13837495 Other lineage4.9 None
SRR13837530 Sensitive lineage4.9 None
SRR13837564 Sensitive lineage4.9 None
SRR13837972 Sensitive lineage4.9 None
SRR13861261 Sensitive lineage4.9 None
SRR13861304 Other lineage4.9 None
SRR13861428 Other lineage4.9 None
SRR13861322 Other lineage4.9 None
SRR13861332 Other lineage4.9 None
SRR13861397 HR-TB lineage4.9 None
SRR13861326 Other lineage4.9 None
SRR13861372 Other lineage4.9 None
SRR13861396 HR-TB lineage4.9 None
SRR13861575 Other lineage4.9 None
SRR13861549 RR-TB lineage4.9 None
SRR13861573 Other lineage4.9 None
SRR25827687 MDR-TB lineage1.1.2 None
SRR14801749 Sensitive None
SRR15368973 Other None
SRR13861646 Other lineage4.9 None
SRR14066533 Sensitive lineage1.1.1 None
SRR14802079 MDR-TB lineage4.2.1 None
SRR1792478 HR-TB La1.7.1 None
SRR1710057 Other lineage2.1 None
SRR17658565 Other lineage3 None
SRR1791747 Other La1.8.1 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR18213713 HR-TB lineage4.5 None
SRR19303884 HR-TB None
SRR18003019 Other lineage2.2.1 None
SRR18910194 HR-TB lineage2.2 None
SRR19304036 HR-TB None
SRR2010299 Pre-XDR-TB lineage2.2.1 None
SRR20969677 HR-TB lineage2 None
SRR21677886 Sensitive lineage4.9 None
SRR25827682 Other None
SRR21732980 Other lineage4.3.3 None
SRR12708416 Sensitive lineage4.1 None
SRR26399973 Other lineage4.9;La3 None
SRR26937071 MDR-TB lineage2.2.1;La3 None
SRR28119741 Pre-XDR-TB lineage2.2.1 None
SRR26159043 Other lineage4.9 None
SRR23961558 Other lineage6.3;lineage4.9;lineage2.1 None
SRR3675473 Sensitive lineage4.9 None
SRR28119811 Other lineage6.3;lineage2.2.1 None
SRR25827497 Pre-XDR-TB lineage3;lineage2.2.1 None
SRR25827605 Pre-XDR-TB lineage4;lineage3;lineage2.2.1 None
ERR4815604 HR-TB None
SRR3675455 Sensitive lineage4 None
SRR3675464 HR-TB lineage4.1 None
SRR3675472 Sensitive lineage4.9 None
ERR176793 Other lineage4.1.1 None
SRR3675477 Other lineage4.9 None
ERR4814536 MDR-TB lineage3;lineage2.1 None
SRR3675465 HR-TB None
ERR4814352 HR-TB lineage2.2.1 None
ERR161034 Other lineage4.3.4.2.1 None
SRR3416776 Other lineage2.1 None
SRR3675221 HR-TB None
SRR3675210 Sensitive lineage4.9 None
SRR3675246 Sensitive lineage4 None
SRR3675236 HR-TB None
ERR702405 Sensitive lineage2.1 None
ERR181824 HR-TB lineage4 None
ERR3275450 Other lineage4 None
SRR3675229 Other lineage4 None
SRR3675232 Other lineage4.1.2.1 None
SRR3675247 Other lineage4.9 None
SRR3675249 Sensitive lineage4.9 None
SRR3675270 HR-TB None
SRR3675311 Other None
SRR3675279 Other None
SRR3675283 Sensitive lineage4.9 None
SRR3675312 HR-TB lineage4 None
SRR3675510 Other None
SRR3675318 Other lineage4.9 None
SRR3675387 Sensitive None
ERR4815752 Other lineage4.9 None
SRR3675542 Other lineage4.9 None
ERR2229542 Other lineage4.8 None
SRR3675514 Sensitive lineage4.9 None
SRR3675522 Other None
SRR3675537 Sensitive lineage4.9 None
SRR3675547 Other lineage4.9 None
ERR4816999 Other None
SRR3675541 Sensitive lineage4.9 None
SRR3675553 Sensitive lineage4.9 None
ERR4817037 Other lineage4.9 None
SRR3675548 Sensitive lineage4.9 None
ERR2027263 Other lineage4 None
SRR3675545 HR-TB None
ERR4817060 RR-TB None
ERR212001 HR-TB None
SRR3675572 Other None
SRR3675558 HR-TB None
ERR161149 Sensitive lineage4.3.4.2.1 mw
SRR3675577 Sensitive lineage4.9 None
SRR3675574 HR-TB None
ERR4816470 Other lineage3 None
ERR212138 HR-TB lineage4 None
ERR4816475 Sensitive lineage4.9 None
ERR4816466 HR-TB None
SRR3742665 HR-TB None
SRR5341384 Sensitive lineage4.9 None
ERR4816559 MDR-TB lineage4.4.1.1 None
ERR4816550 Sensitive lineage4.9 None
ERR4816585 Other lineage2.2 None
ERR502912 Other lineage2.2.1 None
ERR4816656 HR-TB None
ERR4816734 Sensitive lineage4.9 None
ERR4817893 Other lineage4.8;La3 None
ERR4815815 Sensitive lineage4 None
ERR4817735 Other lineage4.8 None
ERR4818021 Other La1.8.1 None
ERR4817896 HR-TB lineage2.2.1 None
SRR7496472 Other None
ERR234659 HR-TB None
ERR2446566 Other lineage4.1 None
ERR3275196 Other lineage2.2.1 nl
ERR4819051 Other lineage4 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR4818252 Other lineage4.1.1.2 None
ERR3275709 HR-TB lineage3 nl
ERR2513470 Other lineage4.2.2.2 None
ERR4818929 HR-TB None
ERR2513283 Other lineage5.1.4 None
ERR2512770 Other lineage4.2.1 None
ERR4820854 Other lineage4.1.2.1 None
ERR4818615 Other None
SRR5341453 Sensitive None
SRR5007188 Other lineage4 None
ERR4819280 Sensitive lineage4 None
SRR5341387 Other lineage4 None
ERR4819322 Other lineage4;lineage1.1 None
SRR5341396 Other lineage4 None
ERR2514327 HR-TB lineage4.8 None
SRR5341425 Other lineage4 None
SRR5341456 Other None
SRR5341412 Pre-XDR-TB lineage3 None
ERR2514552 Sensitive lineage3 None
SRR5341437 Sensitive lineage4.9 None
SRR5341299 Sensitive lineage4 None
SRR5341455 Sensitive lineage4 None
ERR4819781 Other lineage2.2.1 None
SRR5341296 Sensitive lineage4.9 None
SRR5341298 Sensitive lineage4 None
SRR5341300 Other lineage4 None
SRR5341303 RR-TB lineage4 None
ERR4819809 HR-TB lineage4.6.2.2 None
ERR2514692 Other None
SRR5341308 Sensitive lineage4 None
SRR5341302 HR-TB None
ERR2446382 Other lineage4 None
ERR4819910 Other lineage4.9 None
ERR2514821 Other lineage2.2.1 None
ERR4819932 Other lineage4.7 None
SRR5341332 Pre-XDR-TB lineage3 None
SRR5341310 Other lineage1.1.2 None
SRR5341323 Sensitive lineage4 None
SRR5341333 HR-TB None
ERR4820043 Sensitive lineage4.1.2.1 None
SRR5341345 Sensitive lineage4.9 None
SRR5341467 Other lineage4 None
SRR5341461 Sensitive lineage4 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR5341366 Sensitive lineage4 None
ERR2446563 Other lineage2.2.1 nl
ERR2693238 HR-TB lineage4.9 None
ERR2517475 Other lineage4 None
SRR5341465 Pre-XDR-TB lineage2.2.1 None
SRR5341469 Other lineage4 None
SRR6046210 Other lineage4 None
ERR4821053 Other lineage3 None
ERR502511 Sensitive lineage4.9;lineage2.1 None
SRR6045503 HR-TB None
SRR5535933 HR-TB None
SRR6045526 HR-TB None
ERR4821655 Sensitive lineage4 None
ERR2660539 Other lineage4.9 None
ERR4821686 Sensitive lineage4.1.2.1 None
SRR6044819 Sensitive lineage4.9 None
SRR6044780 Other lineage4.9 None
SRR6044790 HR-TB None
SRR6044876 Sensitive lineage4 None
SRR6044855 Other lineage4.9 None
SRR6045010 Other lineage4 None
SRR6045233 HR-TB None
SRR6045053 Other None
SRR6045191 Sensitive lineage4.9 None
SRR6046460 HR-TB None
SRR6046046 Other None
SRR6046253 HR-TB lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR6046066 HR-TB None
SRR6045327 HR-TB None
SRR6046305 Other lineage4.9 None
SRR6046299 HR-TB None
SRR6046362 HR-TB None
SRR6046514 HR-TB None
SRR6046492 Other None
SRR6458423 HR-TB lineage2.2.1 None
SRR6046878 HR-TB lineage4 None
SRR6079962 HR-TB lineage2.2.1.1 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR6046540 HR-TB None
ERR11466062 Sensitive lineage4.9.1 None
SRR6511621 HR-TB None
ERR4831546 HR-TB lineage2.2 None
ERR4831117 HR-TB None
ERR4831617 MDR-TB lineage2.2.1 None
ERR4831620 MDR-TB lineage2.2.1 None
ERR4831657 MDR-TB lineage2.2.1 None
ERR4831638 Sensitive None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4831621 MDR-TB lineage2.2.1.1 None
SRR6785262 Sensitive lineage4.2.1 None
SRR6789626 Other None
SRR6785268 Sensitive lineage4.2.1 None
SRR6785527 Sensitive lineage2.2.1 None
ERR294248 HR-TB None
ERR502510 Sensitive lineage4 None
SRR7496471 Sensitive None
ERR502908 HR-TB lineage2.2.1 None
ERR502943 HR-TB None
SRR7131023 Other lineage4.1.2.1 None
ERR502532 HR-TB None
SRR7496523 Other lineage4.7 None
SRR7496509 Other None
SRR7496517 Other None
SRR9971041 MDR-TB lineage4.3.3 None
SRR9970979 Sensitive lineage4.8 None
SRR9970980 Other lineage4.1.2 None
SRR7535082 Sensitive lineage4 None
SRR7535086 Other None
SRR9970978 Sensitive lineage4.1.2 None
SRR7585435 Other lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR323107 Other lineage4 None
SRR9971080 RR-TB lineage2.2.1 None
SRR9971114 Other lineage2.2.1 None
SRR9971113 Other lineage2.2.1 None
ERR11488822 Pre-XDR-TB lineage4.1.2.1;lineage2.2.1 None
SRR9971112 Other lineage2.2.1 None
ERR323041 HR-TB None
ERR323066 Sensitive lineage4 None
ERR323085 Sensitive lineage4 None
ERR067699 HR-TB lineage4 None
ERR1035122 Sensitive None
ERR1034634 HR-TB None
ERR1063858 HR-TB None
ERR3273109 MDR-TB lineage4 None
ERR1063896 Sensitive None
ERR133825 Sensitive lineage4 None
ERR137286 Sensitive lineage4 None
ERR323115 Sensitive lineage4 None
ERR1063883 Sensitive lineage4 None
ERR11049020 Other lineage4.8 None
ERR12015084 Other lineage4.8 None
ERR3283036 HR-TB None
ERR3283010 Other La1 None
ERR3283030 HR-TB lineage4.9 None
ERR3283027 HR-TB None
ERR3283043 Other lineage4.9 None
ERR3283040 HR-TB None
ERR3283051 Other lineage4.9 None
ERR3283048 HR-TB lineage4.9 None
ERR3283055 HR-TB None
ERR3283058 Other lineage4.9 None
ERR3797043 HR-TB None
ERR3445504 HR-TB None
ERR3797015 HR-TB None
ERR3797019 Other La1.8.1 None
ERR3797046 HR-TB None
ERR3804169 HR-TB lineage4.1.3 None
ERR3797069 Other None
ERR3797080 HR-TB lineage4.9 None
ERR3797058 Other lineage4.9 None
ERR3797083 HR-TB None
ERR400320 Sensitive lineage4 None
ERR3806850 HR-TB lineage4.1.2.1 None
ERR400336 Sensitive lineage4 None
ERR400326 Sensitive lineage4 None
ERR4024991 Other None
ERR400345 Other lineage4 None
ERR4769457 Other lineage4.9 None
ERR4596910 Sensitive lineage4 None
ERR4769452 HR-TB None
ERR4769417 Pre-XDR-TB lineage4.9 None
ERR4769497 HR-TB La1.2 None
ERR4769450 HR-TB None
ERR4769493 Pre-XDR-TB lineage4.9;La1.3 None
ERR4796254 Sensitive lineage4 None
ERR4796929 Sensitive lineage4 None
ERR4796577 MDR-TB None
ERR4797054 Pre-XDR-TB lineage2 None
ERR4797193 HR-TB lineage1.1.2 None
ERR4797184 Sensitive lineage4 None
ERR4797201 Other lineage1.2.2.2 None
ERR4797264 Sensitive None
ERR4797313 HR-TB None
ERR4798099 Other None
ERR4797350 Sensitive lineage4.9 None
ERR4797474 Other None
ERR4797588 MDR-TB lineage3 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4798262 HR-TB La1 None
ERR4799378 Sensitive lineage4 None
ERR4810741 HR-TB None
ERR4799513 HR-TB lineage2.2 None
ERR4800341 Other lineage3 None
ERR4811022 HR-TB None
ERR4811493 HR-TB None
ERR4811031 Sensitive lineage4.5 None
ERR4811105 HR-TB None
ERR12268496 Sensitive lineage4.4.1.1 None
ERR4811030 Sensitive None
ERR4811142 MDR-TB None
ERR6358755 Other lineage4.6.1.1 None
ERR4812155 Sensitive None
ERR5336148 Other None
ERR5908228 Other lineage4.3.3 None
ERR6866639 Other None
ERR6358979 Other None
ERR6866547 Sensitive lineage4 None
ERR6359045 HR-TB None
ERR6359070 Other lineage4.9 None
ERR6866022 Other None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR736834 Sensitive lineage4 None
ERR702404 HR-TB None
ERR702406 HR-TB None
ERR736835 HR-TB None
ERR736867 HR-TB None
ERR736856 HR-TB lineage4 None
ERR736874 HR-TB None
ERR736872 Sensitive lineage4 None
ERR751326 Sensitive lineage4 None
ERR9117721 HR-TB lineage1.1.2 None
ERR7821123 Other lineage1.1.3.2 None
SRR21733183 RR-TB lineage1.1.2 None
ERR176549 Other lineage4.3.4.2.1 None
ERR9117709 HR-TB None
ERR752229 Other lineage4.5 None
ERR9786515 Other lineage4.1.2.1 None
ERR9786421 Other lineage4.1.2.1 None
ERR9117805 Other lineage4.3.2 None
ERR9119096 Other lineage4.3.3 None
ERR9786639 Sensitive lineage4.8 None
ERR9786617 Other lineage4.1.1 None
ERR9786611 HR-TB lineage4.1.3 None
ERR9787153 Other lineage6.1.3 None
ERR9786682 Other lineage4.1.2.1 None
ERR9786911 HR-TB lineage4.1.2.1 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR9786694 Other lineage4.1.2.1 None
ERR9787139 Other lineage6.3.1 None
ERR9787165 Other lineage6 None
ERR9787256 Other lineage6.1.3 None
SRR1158918 Sensitive lineage4 None
SRR10315567 Other lineage2.2.1 None
SRR10315751 MDR-TB lineage4.8 None
SRR10808399 Sensitive lineage4 None
SRR10808668 Sensitive lineage2.2.1 None
SRR10808805 Sensitive None
SRR10809074 Sensitive lineage4 None
SRR1169194 Other None
SRR1172807 Sensitive lineage4.9 None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR1172234 Other None
SRR1172717 Other lineage4.9 None
SRR1172728 MDR-TB None
SRR1172817 HR-TB None
SRR1172857 MDR-TB None
SRR1172951 Other None
SRR1173118 Other None
SRR1173218 Pre-XDR-TB lineage4.3.3 None
SRR1173153 HR-TB None
SRR1173384 Other lineage4 None
SRR1173363 HR-TB None
SRR1173484 Other lineage4 None
SRR1173400 Other None
SRR1173562 HR-TB lineage4 None
SRR1175049 RR-TB None
SRR1173568 Other lineage4.9 None
SRR1173633 HR-TB lineage4.9 None
SRR1173706 Other lineage4.9 None
SRR1173778 Other None
SRR1173629 Other None
SRR1173788 Other None
SRR1175506 Sensitive lineage4.9 None
SRR1175074 MDR-TB None
SRR1175090 Other lineage4.9 None
SRR1175487 Sensitive lineage4.9 None
SRR1175496 HR-TB lineage4.9 None
SRR1175500 MDR-TB lineage4 None
SRR1175127 Sensitive lineage2.2.1.2 None
SRR1180300 Sensitive lineage4.9 None
SRR1175507 MDR-TB lineage4 None
SRR1175508 Other lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
SRR1180148 Sensitive lineage4.9 None
SRR1175513 Other lineage4.9 None
SRR1180250 Other lineage4.9 None
SRR1181349 Sensitive lineage4.4.1.1.1 None
SRR1180312 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
SRR1180406 Sensitive lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR1180996 HR-TB lineage4 None
SRR1181283 Sensitive lineage4.9 None
SRR1181325 Sensitive lineage4.9 None
SRR1180319 Sensitive lineage4.9 None
SRR1180345 Other lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR1180410 Sensitive lineage4.9;lineage2.2 None
SRR1180413 Sensitive lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
SRR1180977 Sensitive lineage4.9 None
SRR1181214 Other lineage4.9 None
SRR1181237 Sensitive lineage2.2 None
SRR1181402 Sensitive lineage4.9 None
SRR1181368 Other lineage4.9 None
SRR1181351 Sensitive lineage4.9 None
SRR1181390 Sensitive lineage2 None
SRR1183965 Sensitive lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
SRR1184021 Sensitive lineage4.9 None
SRR1184294 HR-TB None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR1184312 HR-TB lineage2.2.1 None