TB-Profiler result

Run: ERR7821123
Summary

Run ID: ERR7821123

Sample name:

Date: 02-04-2023 06:21:15

Number of reads: 3068100

Percentage reads mapped: 85.41

Strain: lineage1.1.3.2

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage1 Indo-Oceanic EAI RD239 0.95
lineage1.1 Indo-Oceanic EAI3;EAI4;EAI5;EAI6 RD239 0.99
lineage1.1.3 Indo-Oceanic EAI6 RD239 0.99
lineage1.1.3.2 Indo-Oceanic NA RD239 0.96
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.22 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6112 p.Met291Ile missense_variant 0.97
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8188 p.Leu296Pro missense_variant 0.96
gyrA 8452 p.Ala384Val missense_variant 0.95
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 490905 c.123T>C synonymous_variant 0.13
fgd1 490911 c.129T>G synonymous_variant 0.14
fgd1 490917 c.135C>G synonymous_variant 0.13
fgd1 491013 c.231C>G synonymous_variant 0.15
fgd1 491043 c.261T>G synonymous_variant 0.17
fgd1 491241 p.Asp153Glu missense_variant 0.16
fgd1 491244 c.462T>C synonymous_variant 0.2
fgd1 491259 c.477T>C synonymous_variant 0.22
fgd1 491283 p.Asp167Glu missense_variant 0.21
fgd1 491286 c.504G>C synonymous_variant 0.16
fgd1 491289 c.507C>G synonymous_variant 0.17
fgd1 491292 c.510G>C synonymous_variant 0.17
fgd1 491295 c.513C>G synonymous_variant 0.17
fgd1 491296 p.Val172Ile missense_variant 0.17
fgd1 491302 p.Ile174Val missense_variant 0.16
fgd1 491307 c.525C>G synonymous_variant 0.21
fgd1 491313 c.531C>T synonymous_variant 0.21
fgd1 491319 c.537G>C synonymous_variant 0.21
fgd1 491325 c.543G>C synonymous_variant 0.2
fgd1 491337 c.555C>G synonymous_variant 0.2
fgd1 491340 c.558C>G synonymous_variant 0.2
fgd1 491349 c.567T>C synonymous_variant 0.24
fgd1 491742 c.960T>C synonymous_variant 1.0
ccsA 619695 c.-196G>A upstream_gene_variant 0.95
rpoB 760298 c.492G>C synonymous_variant 0.17
rpoB 760307 c.501T>C synonymous_variant 0.16
rpoB 760310 c.504G>C synonymous_variant 0.15
rpoB 760328 c.522G>C synonymous_variant 0.17
rpoB 760331 c.525G>C synonymous_variant 0.17
rpoB 760340 c.534G>T synonymous_variant 0.15
rpoB 760361 c.555T>C synonymous_variant 0.16
rpoB 760370 c.564C>G synonymous_variant 0.16
rpoB 760376 p.Asp190Glu missense_variant 0.15
rpoB 760380 p.Thr192Leu missense_variant 0.16
rpoB 760475 c.669A>G synonymous_variant 0.16
rpoB 760481 c.675G>C synonymous_variant 0.15
rpoB 760484 c.678A>G synonymous_variant 0.15
rpoB 760532 c.726T>C synonymous_variant 0.15
rpoB 760533 p.Val243Thr missense_variant 0.15
rpoB 760591 p.Val262Ala missense_variant 0.18
rpoB 760611 c.805T>C synonymous_variant 0.18
rpoB 760634 c.828T>C synonymous_variant 0.16
rpoB 760646 c.840C>G synonymous_variant 0.18
rpoB 760670 c.864G>C synonymous_variant 0.14
rpoB 760982 c.1176G>C synonymous_variant 0.15
rpoB 760985 c.1179G>C synonymous_variant 0.15
rpoB 761015 c.1209G>C synonymous_variant 0.17
rpoB 761021 c.1215G>C synonymous_variant 0.16
rpoB 761027 c.1221A>G synonymous_variant 0.16
rpoB 761150 c.1344A>C synonymous_variant 0.2
rpoB 761153 c.1347G>C synonymous_variant 0.21
rpoB 761165 c.1359G>C synonymous_variant 0.2
rpoB 761180 c.1374A>C synonymous_variant 0.25
rpoB 761189 c.1383T>C synonymous_variant 0.25
rpoB 761195 c.1389G>C synonymous_variant 0.27
rpoB 761207 c.1401C>T synonymous_variant 0.28
rpoB 761213 c.1407G>C synonymous_variant 0.28
rpoB 761219 c.1413G>C synonymous_variant 0.27
rpoB 761249 c.1443A>G synonymous_variant 0.31
rpoB 761255 c.1449T>G synonymous_variant 0.27
rpoB 761261 c.1455G>T synonymous_variant 0.24
rpoB 761306 c.1500C>G synonymous_variant 0.22
rpoB 761312 c.1506G>C synonymous_variant 0.23
rpoB 761327 c.1521A>G synonymous_variant 0.21
rpoB 761330 c.1524G>C synonymous_variant 0.17
rpoB 761537 c.1731C>G synonymous_variant 0.19
rpoB 761570 c.1764T>C synonymous_variant 0.25
rpoB 761573 c.1767C>G synonymous_variant 0.27
rpoB 761579 c.1773G>C synonymous_variant 0.24
rpoB 761588 c.1782C>T synonymous_variant 0.19
rpoB 761606 c.1800C>G synonymous_variant 0.22
rpoB 761612 c.1806G>C synonymous_variant 0.16
rpoB 761615 c.1809A>T synonymous_variant 0.16
rpoB 761636 c.1830G>T synonymous_variant 0.18
rpoB 761645 c.1839C>G synonymous_variant 0.15
rpoB 761648 c.1842T>C synonymous_variant 0.16
rpoB 761657 c.1851C>G synonymous_variant 0.15
rpoB 761727 p.Ser641Gly missense_variant 0.15
rpoB 761728 c.1923dupC frameshift_variant 0.15
rpoB 761732 c.1926C>G synonymous_variant 0.15
rpoB 761735 c.1929C>G synonymous_variant 0.15
rpoB 761747 c.1941G>C synonymous_variant 0.16
rpoB 761750 c.1944G>C synonymous_variant 0.18
rpoB 761909 c.2103T>C synonymous_variant 0.14
rpoB 761948 c.2142G>C synonymous_variant 0.15
rpoB 761954 c.2148C>G synonymous_variant 0.15
rpoB 762014 c.2208C>T synonymous_variant 0.15
rpoB 762083 c.2277T>C synonymous_variant 0.17
rpoB 762086 c.2280G>C synonymous_variant 0.17
rpoB 762114 p.Ile770Val missense_variant 0.15
rpoB 762131 c.2325C>G synonymous_variant 0.18
rpoB 762140 c.2334G>C synonymous_variant 0.15
rpoB 762143 c.2337T>C synonymous_variant 0.2
rpoB 762149 c.2343G>C synonymous_variant 0.22
rpoB 762167 c.2361T>C synonymous_variant 0.22
rpoB 762176 c.2370T>C synonymous_variant 0.23
rpoB 762185 c.2379G>C synonymous_variant 0.22
rpoB 762206 c.2400C>G synonymous_variant 0.23
rpoB 762233 c.2427G>C synonymous_variant 0.18
rpoB 762246 c.2440C>T synonymous_variant 0.17
rpoB 762254 c.2448T>G synonymous_variant 0.16
rpoB 762257 c.2451C>G synonymous_variant 0.17
rpoB 762266 c.2460T>C synonymous_variant 0.15
rpoB 762329 c.2523G>C synonymous_variant 0.16
rpoB 762338 c.2532T>C synonymous_variant 0.15
rpoB 762362 p.Glu852Asp missense_variant 0.15
rpoB 762369 c.2563T>C synonymous_variant 0.16
rpoC 762398 c.-972T>C upstream_gene_variant 0.16
rpoC 762401 c.-969G>C upstream_gene_variant 0.15
rpoC 762404 c.-966T>C upstream_gene_variant 0.16
rpoC 762410 c.-960T>C upstream_gene_variant 0.18
rpoC 762416 c.-954A>G upstream_gene_variant 0.15
rpoC 762419 c.-951C>G upstream_gene_variant 0.15
rpoC 762434 c.-936T>C upstream_gene_variant 0.17
rpoC 762449 c.-921C>A upstream_gene_variant 0.15
rpoC 762467 c.-903C>T upstream_gene_variant 0.17
rpoC 762929 c.-441G>C upstream_gene_variant 0.18
rpoC 762989 c.-381G>C upstream_gene_variant 0.17
rpoC 762995 c.-375G>T upstream_gene_variant 0.21
rpoC 763013 c.-357C>G upstream_gene_variant 0.21
rpoC 763028 c.-342T>C upstream_gene_variant 0.19
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.2
rpoC 763040 c.-330C>G upstream_gene_variant 0.23
rpoC 763070 c.-300T>C upstream_gene_variant 0.19
rpoC 763085 c.-285C>G upstream_gene_variant 0.18
rpoC 763115 c.-255T>C upstream_gene_variant 0.18
rpoC 763136 c.-234C>T upstream_gene_variant 0.15
rpoC 763402 c.33C>G synonymous_variant 0.16
rpoC 763411 c.42T>G synonymous_variant 0.14
rpoC 763441 c.72C>T synonymous_variant 0.14
rpoC 763444 c.75T>C synonymous_variant 0.16
rpoC 763456 c.87A>G synonymous_variant 0.17
rpoC 763486 c.117T>G synonymous_variant 0.18
rpoC 763528 c.159G>A synonymous_variant 0.19
rpoC 763546 c.177A>G synonymous_variant 0.18
rpoC 763570 c.201G>C synonymous_variant 0.18
rpoC 763573 c.204G>C synonymous_variant 0.21
rpoC 763594 c.225C>T synonymous_variant 0.2
rpoC 763603 c.234C>T synonymous_variant 0.18
rpoC 763636 c.267T>C synonymous_variant 0.2
rpoC 763660 c.291T>G synonymous_variant 0.17
rpoC 763675 c.306C>G synonymous_variant 0.17
rpoC 763717 c.348T>C synonymous_variant 0.16
rpoC 763723 c.354G>C synonymous_variant 0.18
rpoC 763732 c.363C>G synonymous_variant 0.19
rpoC 763741 c.372C>T synonymous_variant 0.19
rpoC 763744 c.375G>C synonymous_variant 0.19
rpoC 763765 c.396T>C synonymous_variant 0.19
rpoC 763774 c.405G>C synonymous_variant 0.19
rpoC 763807 c.438T>C synonymous_variant 0.19
rpoC 763816 c.447C>G synonymous_variant 0.19
rpoC 763825 c.456G>A synonymous_variant 0.18
rpoC 763835 p.Ala156Thr missense_variant 0.14
rpoC 763853 p.Val162Ile missense_variant 0.13
rpoC 763884 p.Ala172Val missense_variant 0.86
rpoC 763886 c.517C>A synonymous_variant 0.86
rpoC 764196 p.Ser276Leu missense_variant 0.13
rpoC 764353 c.984G>C synonymous_variant 0.18
rpoC 764405 c.1036A>C synonymous_variant 0.15
rpoC 764554 c.1185C>T synonymous_variant 0.17
rpoC 764560 c.1191T>C synonymous_variant 0.16
rpoC 764566 c.1197C>G synonymous_variant 0.18
rpoC 764575 c.1206T>G synonymous_variant 0.22
rpoC 764581 c.1212T>C synonymous_variant 0.19
rpoC 764593 c.1224C>T synonymous_variant 0.19
rpoC 764611 c.1242G>T synonymous_variant 0.17
rpoC 764650 c.1281G>C synonymous_variant 0.17
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 0.17
rpoC 764752 c.1383G>C synonymous_variant 0.21
rpoC 764764 c.1395T>C synonymous_variant 0.2
rpoC 764809 c.1440C>T synonymous_variant 0.2
rpoC 764815 c.1446A>G synonymous_variant 0.2
rpoC 764827 c.1458G>C synonymous_variant 0.19
rpoC 765171 p.Pro601Leu missense_variant 1.0
rpoC 765230 p.Ala621Thr missense_variant 0.99
rpoC 765478 c.2109T>C synonymous_variant 0.19
rpoC 765499 c.2130C>G synonymous_variant 0.22
rpoC 765529 c.2160C>T synonymous_variant 0.26
rpoC 765541 c.2172C>G synonymous_variant 0.28
rpoC 765553 c.2184C>T synonymous_variant 0.24
rpoC 765556 c.2187G>C synonymous_variant 0.22
rpoC 765559 c.2190G>C synonymous_variant 0.16
rpoC 765580 c.2211G>C synonymous_variant 0.22
rpoC 765613 p.His748Gln missense_variant 0.25
rpoC 765625 c.2256C>G synonymous_variant 0.24
rpoC 765631 p.Asp754Glu missense_variant 0.19
rpoC 765700 c.2331T>C synonymous_variant 0.21
rpoC 765734 c.2365T>C synonymous_variant 0.2
rpoC 765739 c.2370G>T synonymous_variant 0.21
rpoC 765751 c.2382C>G synonymous_variant 0.2
rpoC 765753 p.Asp795Ala missense_variant 0.22
rpoC 765772 c.2403C>G synonymous_variant 0.21
rpoC 765784 c.2415C>G synonymous_variant 0.21
rpoC 765787 c.2418C>T synonymous_variant 0.19
rpoC 765793 c.2424C>G synonymous_variant 0.22
rpoC 765796 c.2427C>T synonymous_variant 0.22
rpoC 765814 c.2445A>G synonymous_variant 0.15
rpoC 765826 c.2457T>C synonymous_variant 0.19
rpoC 765835 c.2466C>T synonymous_variant 0.2
rpoC 765850 c.2481G>C synonymous_variant 0.18
rpoC 765883 c.2514C>G synonymous_variant 0.18
rpoC 765886 c.2517C>G synonymous_variant 0.23
rpoC 765892 c.2523T>C synonymous_variant 0.19
rpoC 765937 c.2568T>C synonymous_variant 0.19
rpoC 765967 c.2598C>T synonymous_variant 0.18
rpoC 765982 c.2613C>G synonymous_variant 0.16
rpoC 765994 c.2625A>T synonymous_variant 0.14
rpoC 766027 c.2658G>C synonymous_variant 0.17
rpoC 766043 p.Gln892Glu missense_variant 0.18
rpoC 766054 c.2685C>G synonymous_variant 0.16
rpoC 766540 p.Asp1057Glu missense_variant 0.15
rpoC 766582 c.3213C>G synonymous_variant 0.16
rpoC 766583 p.Gly1072Ser missense_variant 0.16
rpoC 766594 c.3225G>C synonymous_variant 0.17
rpoC 766597 c.3228C>G synonymous_variant 0.18
rpoC 766607 p.Ile1080Leu missense_variant 0.21
rpoC 766726 c.3357T>C synonymous_variant 0.16
rpoC 766738 c.3369G>C synonymous_variant 0.18
rpoC 766747 c.3378C>T synonymous_variant 0.15
rpoC 766774 c.3405T>C synonymous_variant 0.16
rpoC 766801 c.3432C>G synonymous_variant 0.18
rpoC 766804 c.3435A>G synonymous_variant 0.2
rpoC 766861 c.3492G>C synonymous_variant 0.21
rpoC 766864 c.3495G>C synonymous_variant 0.2
rpoC 766867 c.3498C>G synonymous_variant 0.19
rpoC 766882 c.3513C>T synonymous_variant 0.2
rpoC 766894 c.3525T>C synonymous_variant 0.25
rpoC 766900 c.3531T>C synonymous_variant 0.24
rpoC 766933 c.3564A>G synonymous_variant 0.25
rpoC 766945 c.3576A>G synonymous_variant 0.27
rpoC 766963 c.3594T>C synonymous_variant 0.27
rpoC 766972 c.3603G>C synonymous_variant 0.29
rpoC 766987 c.3618G>C synonymous_variant 0.26
rpoC 766996 c.3627C>T synonymous_variant 0.31
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.28
rpoC 767014 c.3645G>C synonymous_variant 0.27
rpoC 767033 c.3664_3666delTCGinsAGC synonymous_variant 0.28
rpoC 767059 c.3690T>G synonymous_variant 0.27
rpoC 767062 c.3693C>A synonymous_variant 0.25
rpoC 767098 c.3729T>C synonymous_variant 0.26
rpoC 767119 c.3750A>G synonymous_variant 0.26
rpoC 767134 c.3765C>A synonymous_variant 0.24
rpoC 767158 c.3789T>C synonymous_variant 0.24
rpoC 767180 p.Ala1271Gln missense_variant 0.25
rpoC 767191 c.3822C>G synonymous_variant 0.22
rpoC 767206 c.3837C>G synonymous_variant 0.21
rpoC 767209 c.3840T>C synonymous_variant 0.22
rpoC 767212 c.3843G>C synonymous_variant 0.22
rpoC 767221 c.3852C>G synonymous_variant 0.22
rpoC 767230 c.3861G>C synonymous_variant 0.18
rpoC 767233 c.3864T>C synonymous_variant 0.18
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781700 c.141G>C synonymous_variant 0.16
rpsL 781703 c.144G>T synonymous_variant 0.15
rpsL 781715 c.156T>C synonymous_variant 0.16
rpsL 781728 c.169T>C synonymous_variant 0.17
rpsL 781736 c.177T>C synonymous_variant 0.16
rpsL 781742 c.183C>T synonymous_variant 0.15
rpsL 781748 c.189C>G synonymous_variant 0.14
rpsL 781754 c.195G>C synonymous_variant 0.2
rpsL 781760 c.201T>C synonymous_variant 0.2
rpsL 781772 c.213C>A synonymous_variant 0.19
rpsL 781808 c.249C>T synonymous_variant 0.24
rpsL 781811 c.252C>T synonymous_variant 0.23
rpsL 781832 c.273T>C synonymous_variant 0.24
rpsL 781838 c.279G>C synonymous_variant 0.27
rpsL 781841 c.282C>G synonymous_variant 0.27
rpsL 781865 c.306G>C synonymous_variant 0.26
rpsL 781868 c.309T>C synonymous_variant 0.25
rpsL 781871 c.312G>C synonymous_variant 0.24
rpsL 781877 c.318T>C synonymous_variant 0.21
rpsL 781892 c.333A>G synonymous_variant 0.22
rpsL 781898 c.339A>T synonymous_variant 0.22
rpsL 781916 c.357T>C synonymous_variant 0.2
rpsL 781929 p.Gly124Ser missense_variant 0.23
rplC 801166 p.Gly120Ser missense_variant 0.95
fbiC 1303860 c.930A>C synonymous_variant 0.15
fbiC 1303905 c.975G>C synonymous_variant 0.15
fbiC 1304613 c.1683T>C synonymous_variant 0.15
fbiC 1304711 p.Ala594Asp missense_variant 0.14
fbiC 1304727 c.1797A>G synonymous_variant 0.17
fbiC 1304742 c.1812T>C synonymous_variant 0.17
fbiC 1304778 c.1848T>C synonymous_variant 0.17
fbiC 1304784 c.1854T>C synonymous_variant 0.17
fbiC 1304787 c.1857T>G synonymous_variant 0.15
fbiC 1304808 c.1878C>G synonymous_variant 0.15
fbiC 1304811 c.1881C>G synonymous_variant 0.16
fbiC 1304817 c.1887T>C synonymous_variant 0.16
fbiC 1304893 p.Gly655Ser missense_variant 0.14
fbiC 1304907 c.1977C>G synonymous_variant 0.17
fbiC 1304910 c.1980G>C synonymous_variant 0.16
fbiC 1304916 c.1986T>C synonymous_variant 0.16
fbiC 1304928 c.1998T>C synonymous_variant 0.19
fbiC 1304937 c.2007G>C synonymous_variant 0.19
fbiC 1304958 c.2028T>G synonymous_variant 0.2
fbiC 1304994 c.2064A>G synonymous_variant 0.16
embR 1417019 p.Cys110Tyr missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.15
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.15
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.14
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.16
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.16
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.13
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.16
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.15
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.2
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.29
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.29
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.26
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.17
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.16
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.16
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.13
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.12
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.16
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.16
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.33
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.23
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.18
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.19
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.16
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.16
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.19
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.19
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.14
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.15
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.13
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.15
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.17
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.16
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.2
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.2
rrl 1476031 n.2374C>T non_coding_transcript_exon_variant 0.14
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.14
rrl 1476034 n.2377C>A non_coding_transcript_exon_variant 0.18
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.14
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.14
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.16
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.15
inhA 1674480 c.279T>C synonymous_variant 0.16
inhA 1674486 c.285T>C synonymous_variant 0.16
inhA 1674537 c.336C>G synonymous_variant 0.16
inhA 1674542 p.Ala114Glu missense_variant 0.15
inhA 1674561 c.360C>T synonymous_variant 0.14
inhA 1674883 p.Ile228Val missense_variant 0.9
rpsA 1833721 c.180A>G synonymous_variant 0.16
rpsA 1833724 c.183C>G synonymous_variant 0.16
rpsA 1833727 c.186G>C synonymous_variant 0.18
rpsA 1833742 c.201A>G synonymous_variant 0.18
rpsA 1833745 c.204G>C synonymous_variant 0.18
rpsA 1833748 c.207C>G synonymous_variant 0.19
rpsA 1833787 c.246C>G synonymous_variant 0.2
rpsA 1833790 c.249T>C synonymous_variant 0.19
rpsA 1833802 c.261A>G synonymous_variant 0.17
rpsA 1833811 c.270G>T synonymous_variant 0.17
rpsA 1834451 c.910T>C synonymous_variant 0.16
rpsA 1834465 c.924T>C synonymous_variant 0.15
rpsA 1834468 c.927A>G synonymous_variant 0.17
rpsA 1834489 c.948T>C synonymous_variant 0.19
rpsA 1834513 c.972C>G synonymous_variant 0.22
rpsA 1834528 c.987T>C synonymous_variant 0.2
rpsA 1834540 c.999G>C synonymous_variant 0.21
rpsA 1834546 c.1005T>C synonymous_variant 0.2
rpsA 1834555 c.1014T>G synonymous_variant 0.17
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 0.99
katG 2155661 p.Val151Ile missense_variant 0.14
katG 2155680 c.432G>C synonymous_variant 0.16
katG 2155691 c.421T>C synonymous_variant 0.16
katG 2155695 c.417C>G synonymous_variant 0.16
katG 2155704 c.408C>G synonymous_variant 0.18
katG 2155716 c.396T>G synonymous_variant 0.17
katG 2155722 c.390G>C synonymous_variant 0.16
katG 2155728 c.384G>T synonymous_variant 0.15
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2167983 p.Gly877Asp missense_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
kasA 2518480 c.366T>C synonymous_variant 0.14
kasA 2518504 c.390T>C synonymous_variant 0.16
kasA 2518506 p.Ala131Glu missense_variant 0.16
kasA 2518519 c.405G>C synonymous_variant 0.17
kasA 2518528 c.414C>A synonymous_variant 0.16
kasA 2518561 c.447T>C synonymous_variant 0.16
kasA 2518574 p.Ile154Val missense_variant 0.14
kasA 2518714 c.600A>C synonymous_variant 0.16
kasA 2518732 c.618C>G synonymous_variant 0.22
kasA 2518744 c.630C>T synonymous_variant 0.21
kasA 2518747 c.633C>G synonymous_variant 0.21
kasA 2518768 c.654C>T synonymous_variant 0.25
kasA 2518777 c.663C>T synonymous_variant 0.22
kasA 2518783 c.669T>C synonymous_variant 0.26
kasA 2518789 c.675G>C synonymous_variant 0.2
kasA 2518792 c.678C>A synonymous_variant 0.17
kasA 2518795 c.681C>G synonymous_variant 0.19
kasA 2518825 c.711T>C synonymous_variant 0.17
kasA 2519173 c.1059C>G synonymous_variant 0.16
ahpC 2726051 c.-142G>A upstream_gene_variant 1.0
Rv2752c 3064632 c.1560C>T synonymous_variant 0.99
thyX 3067515 p.Ser144Thr missense_variant 0.16
thyX 3067530 p.Ala139Ser missense_variant 0.14
thyX 3067545 p.Glu134Ala missense_variant 0.18
thyX 3067556 p.His130Gln missense_variant 0.16
thyX 3067559 c.387C>G synonymous_variant 0.14
thyX 3067565 p.Asp127Glu missense_variant 0.15
thyX 3067611 p.Lys112Thr missense_variant 0.17
thyX 3067619 c.327A>C synonymous_variant 0.18
thyX 3067634 c.312C>G synonymous_variant 0.14
thyX 3067652 c.294T>C synonymous_variant 0.16
thyX 3067718 c.228C>G synonymous_variant 0.15
thyX 3067727 c.219A>C synonymous_variant 0.14
thyX 3067736 c.210C>T synonymous_variant 0.15
thyX 3067739 c.207T>C synonymous_variant 0.16
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3448714 p.Asp71His missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474597 c.591C>A synonymous_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
fbiB 3642173 c.639G>A synonymous_variant 1.0
rpoA 3877587 c.921A>G synonymous_variant 0.18
rpoA 3877613 p.Ile299Val missense_variant 0.19
rpoA 3877656 c.852T>G synonymous_variant 0.16
rpoA 3877668 c.840A>G synonymous_variant 0.18
rpoA 3877679 p.Ala277Ser missense_variant 0.18
rpoA 3877686 c.822A>G synonymous_variant 0.2
rpoA 3877692 c.816G>C synonymous_variant 0.2
rpoA 3877704 c.804G>C synonymous_variant 0.16
rpoA 3877743 c.765T>C synonymous_variant 0.15
rpoA 3878143 p.Gly122Asp missense_variant 0.14
rpoA 3878163 c.345C>T synonymous_variant 0.17
rpoA 3878187 c.321C>G synonymous_variant 0.16
rpoA 3878193 c.315T>C synonymous_variant 0.14
rpoA 3878331 c.177A>G synonymous_variant 0.14
rpoA 3878337 c.171T>C synonymous_variant 0.17
rpoA 3878346 c.162T>C synonymous_variant 0.18
rpoA 3878364 c.144A>C synonymous_variant 0.22
rpoA 3878367 c.141C>G synonymous_variant 0.26
rpoA 3878376 c.132G>C synonymous_variant 0.22
rpoA 3878385 c.123C>G synonymous_variant 0.25
rpoA 3878388 c.120C>G synonymous_variant 0.22
rpoA 3878391 c.117T>C synonymous_variant 0.23
rpoA 3878415 c.93C>T synonymous_variant 0.22
rpoA 3878424 c.84G>C synonymous_variant 0.22
rpoA 3878436 c.72A>G synonymous_variant 0.22
rpoA 3878442 c.66G>C synonymous_variant 0.2
rpoA 3878454 c.54A>C synonymous_variant 0.2
rpoA 3878463 c.45C>A synonymous_variant 0.14
rpoA 3878484 c.24C>A synonymous_variant 0.16
rpoA 3878490 c.18C>A synonymous_variant 0.18
rpoA 3878496 c.12A>T synonymous_variant 0.15
rpoA 3878672 c.-165A>T upstream_gene_variant 0.14
rpoA 3878687 c.-180A>C upstream_gene_variant 0.83
rpoA 3878698 c.-191A>G upstream_gene_variant 0.15
clpC1 4038755 c.1950G>T synonymous_variant 0.16
clpC1 4038773 c.1932T>C synonymous_variant 0.18
clpC1 4038782 c.1923G>C synonymous_variant 0.18
clpC1 4038812 c.1893T>C synonymous_variant 0.19
clpC1 4038845 c.1860G>C synonymous_variant 0.19
clpC1 4038860 c.1845G>C synonymous_variant 0.18
clpC1 4038878 c.1827A>G synonymous_variant 0.24
clpC1 4038908 c.1797C>G synonymous_variant 0.25
clpC1 4038914 c.1791G>C synonymous_variant 0.26
clpC1 4038923 c.1780_1782delCTAinsTTG synonymous_variant 0.25
clpC1 4038953 c.1752A>G synonymous_variant 0.21
clpC1 4038956 c.1749T>C synonymous_variant 0.18
clpC1 4038965 c.1740T>C synonymous_variant 0.17
clpC1 4038971 c.1734T>C synonymous_variant 0.15
clpC1 4038974 c.1731T>C synonymous_variant 0.15
clpC1 4038989 c.1716T>C synonymous_variant 0.19
clpC1 4038997 c.1708T>C synonymous_variant 0.17
clpC1 4039004 c.1701C>G synonymous_variant 0.16
clpC1 4039022 c.1683A>G synonymous_variant 0.17
clpC1 4039694 c.1011G>C synonymous_variant 0.18
clpC1 4039724 c.981A>G synonymous_variant 0.15
clpC1 4039831 c.874T>C synonymous_variant 0.16
clpC1 4039850 c.855T>C synonymous_variant 0.17
clpC1 4039865 c.840T>C synonymous_variant 0.18
clpC1 4039898 c.807C>G synonymous_variant 0.2
clpC1 4039930 p.Ser259Cys missense_variant 0.14
clpC1 4039931 c.774T>C synonymous_variant 0.16
clpC1 4039952 c.753T>C synonymous_variant 0.14
clpC1 4040517 p.Val63Ala missense_variant 0.94
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4240685 p.Thr275Ala missense_variant 0.16
embC 4240693 c.831T>G synonymous_variant 0.14
embC 4240699 c.837C>G synonymous_variant 0.15
embC 4240726 c.864G>C synonymous_variant 0.17
embC 4240780 c.918T>C synonymous_variant 0.18
embC 4240783 c.921G>C synonymous_variant 0.18
embC 4240789 c.927T>C synonymous_variant 0.17
embC 4241042 p.Asn394Asp missense_variant 0.95
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243848 p.Val206Met missense_variant 1.0
embA 4245092 c.1860C>G synonymous_variant 0.14
embA 4245101 c.1869G>C synonymous_variant 0.14
embA 4245137 c.1905T>C synonymous_variant 0.23
embA 4245146 c.1914G>A synonymous_variant 0.23
embA 4245149 c.1917C>T synonymous_variant 0.23
embA 4245153 p.Ile641Val missense_variant 0.22
embA 4245182 c.1950T>C synonymous_variant 0.23
embA 4245189 c.1957C>T synonymous_variant 0.22
embA 4245198 p.Leu656Ile missense_variant 0.21
embA 4245207 c.1975T>C synonymous_variant 0.2
embA 4245215 c.1983A>C synonymous_variant 0.2
embA 4245222 p.Tyr664Gln missense_variant 0.19
embA 4245784 p.Thr851Met missense_variant 0.95
embA 4245969 p.Pro913Ser missense_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
embB 4247951 p.Ser480Ala missense_variant 0.2
embB 4247974 c.1461C>G synonymous_variant 0.15
embB 4248172 c.1659G>C synonymous_variant 0.17
embB 4248199 c.1686A>G synonymous_variant 0.15
embB 4248200 p.Ile563Val missense_variant 0.14
embB 4248205 c.1692C>G synonymous_variant 0.14
embB 4248206 p.Ser565Gly missense_variant 0.14
embB 4248220 c.1707A>C synonymous_variant 0.15
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
whiB6 4338603 c.-82C>T upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407780 c.423G>A synonymous_variant 1.0
gid 4407873 c.330G>T synonymous_variant 1.0