Rv0668 - c.3369G>C
Drug resistance types
39 Sensitive
3 RR-TB
121 HR-TB
26 MDR-TB
12 Pre-XDR-TB
0 XDR-TB
146 Other
lineage Counts
| lineage | Count |
|---|---|
| 140 | |
| lineage4.9 | 39 |
| lineage4 | 20 |
| lineage2.2.1 | 19 |
| lineage1.2.2.2 | 3 |
| lineage3 | 10 |
| La1 | 2 |
| lineage2 | 3 |
| lineage3.1.2 | 1 |
| lineage2.2 | 8 |
| lineage4.6.1.1 | 3 |
| lineage1.1.3.2 | 1 |
| lineage1.1.2 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.3.2 | 1 |
| lineage5.2 | 2 |
| lineage4.8 | 10 |
| lineage4.1.2.1 | 15 |
| lineage4.6.2.2 | 6 |
| lineage4.1 | 3 |
| lineage4.1.3 | 2 |
| lineage4.8;lineage4.1 | 2 |
| lineage4.1.1 | 2 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage6.1.3 | 1 |
| lineage6 | 1 |
| lineage6.3.1 | 3 |
| lineage6.1.1 | 2 |
| La3 | 1 |
| lineage4.4.1.1 | 3 |
| lineage2.2.1.2 | 2 |
| lineage4.3.3 | 4 |
| lineage2.2.1.1 | 5 |
| lineage3.1 | 2 |
| lineage1.2.1.2 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.3.4.1 | 1 |
| lineage2.1 | 2 |
| lineage1.1.1 | 1 |
| lineage4.5 | 1 |
| lineage4.3.4 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3 | 1 |
| lineage4.8;La3 | 1 |
| La1.8.1 | 1 |
| lineage4.9.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4;lineage1.1 | 1 |
| lineage4.9;lineage3.1.2.1 | 1 |
| lineage4.7 | 2 |
| lineage4.2.1 | 2 |
| lineage4.1.2.1.1 | 1 |
| La2 | 1 |
| lineage4.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 347 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4407463 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798262 | HR-TB | La1 | None | ERR4796577 | MDR-TB | None | ERR4796584 | Sensitive | lineage1.2.2.2 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798504 | Other | lineage3 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR702404 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR702406 | HR-TB | None | ERR736839 | Other | None | ERR736837 | Other | lineage4.9 | None | ERR736835 | HR-TB | None | ERR736865 | HR-TB | None | ERR736867 | HR-TB | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR736874 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117709 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786604 | Other | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | ERR9787223 | Sensitive | lineage6.3.1 | None | ERR987722 | HR-TB | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786843 | Other | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR990545 | Other | lineage3 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR1169194 | Other | None | SRR1167384 | Other | lineage4 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172310 | HR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173153 | HR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173629 | Other | None | SRR1173778 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1175049 | RR-TB | None | SRR1173788 | Other | None | SRR1174897 | HR-TB | None | SRR1175074 | MDR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1196494 | MDR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196566 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR12142341 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13837424 | Sensitive | lineage4.9 | None | SRR1710057 | Other | lineage2.1 | None | SRR13837702 | Sensitive | lineage4.9 | None | SRR13837846 | Sensitive | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR13837660 | Other | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR14782405 | HR-TB | None | SRR15368973 | Other | None | SRR17658565 | Other | lineage3 | None | SRR20969677 | HR-TB | lineage2 | None | SRR17832802 | HR-TB | lineage3 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19303884 | HR-TB | None | SRR18003019 | Other | lineage2.2.1 | None | SRR19304036 | HR-TB | None | ERR11081258 | Other | lineage4.8 | None | ERR176793 | Other | lineage4.1.1 | None | ERR4815604 | HR-TB | None | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | ERR11138607 | Pre-XDR-TB | lineage2.2.1 | None | SRR3416776 | Other | lineage2.1 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR181744 | HR-TB | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675222 | Other | None | SRR3675501 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675234 | Other | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675270 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR3275201 | Sensitive | lineage4.8 | nl | ERR176643 | HR-TB | None | SRR3675311 | Other | None | ERR176751 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR176740 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | SRR3675510 | Other | None | ERR4816999 | Other | None | ERR2229542 | Other | lineage4.8 | None | ERR2027263 | Other | lineage4 | None | ERR212033 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | ERR212121 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675574 | HR-TB | None | SRR3675572 | Other | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816466 | HR-TB | None | ERR4816470 | Other | lineage3 | None | SRR3675571 | HR-TB | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4816585 | Other | lineage2.2 | None | ERR4816656 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | SRR7898221 | MDR-TB | lineage1.1.2 | None | SRR3742665 | HR-TB | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR2446566 | Other | lineage4.1 | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR245758 | Other | lineage4.9.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | ERR4818394 | Other | lineage4.9 | None | ERR4819051 | Other | lineage4 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR2446570 | Sensitive | lineage4.8 | nl | ERR4818929 | HR-TB | None | SRR5007188 | Other | lineage4 | None | ERR4818615 | Other | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2514197 | RR-TB | lineage1.1.1.1 | None | ERR4819462 | Other | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4820335 | Other | lineage4.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341456 | Other | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR2514390 | Sensitive | lineage4.9;lineage3.1.2.1 | None | ERR2514692 | Other | None | ERR2693231 | Other | None | SRR5341302 | HR-TB | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR5341333 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR5341470 | HR-TB | None | ERR2693230 | Other | None | ERR2517514 | Sensitive | lineage4.8 | None | SRR6045555 | HR-TB | None | ERR2693257 | Other | None | SRR6045526 | HR-TB | None | SRR5535933 | HR-TB | None | ERR2693254 | Other | None | SRR6045503 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045577 | Sensitive | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6046152 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045892 | Sensitive | None | ERR2693232 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6044911 | Sensitive | lineage4.9 | None | SRR6044925 | Sensitive | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6046299 | HR-TB | None | SRR6046046 | Other | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045399 | Other | None | SRR6046305 | Other | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046397 | Other | None | SRR6046521 | Other | lineage4.4.1.1 | None | ERR4830353 | Other | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046540 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6785413 | Other | lineage2.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6785268 | Sensitive | lineage4.2.1 | None | ERR4972483 | Pre-XDR-TB | lineage4.1.2.1.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | ERR294266 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6789626 | Other | None | ERR502524 | HR-TB | La2 | None | SRR7496471 | Sensitive | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR502532 | HR-TB | None | SRR8217918 | HR-TB | None | SRR7496517 | Other | None | SRR7496509 | Other | None | SRR7535086 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR323039 | HR-TB | None | ERR323043 | HR-TB | None | ERR323053 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR1023525 | HR-TB | lineage4 | None | DRR188519 | Other | lineage4.4.2 | None | ERR1034634 | HR-TB | None | ERR1063855 | Other | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR11049020 | Other | lineage4.8 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283036 | HR-TB | None | ERR3283024 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3283058 | Other | lineage4.9 | None | ERR3445504 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797061 | Other | None | ERR3797044 | Other | None | ERR3797069 | Other | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804162 | Sensitive | lineage6.3.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR400529 | Other | lineage3 | None |
|---|
