Rv0668 - c.2658G>C
Drug resistance types
70 Sensitive
5 RR-TB
97 HR-TB
25 MDR-TB
14 Pre-XDR-TB
0 XDR-TB
136 Other
lineage Counts
| lineage | Count |
|---|---|
| 113 | |
| lineage4 | 50 |
| lineage2 | 3 |
| lineage9;lineage3.1 | 1 |
| lineage2.2.1;La3 | 1 |
| lineage4.8 | 11 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| lineage4.9;La3 | 1 |
| lineage4.9 | 37 |
| lineage4.2;La1.7 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage3;lineage2.2.1 | 1 |
| lineage4.1.1 | 3 |
| lineage4.3.4.2.1 | 3 |
| lineage2.2.1 | 24 |
| lineage2.1 | 2 |
| lineage4.1.2.1 | 15 |
| lineage4.3 | 1 |
| lineage4.4.1.1 | 2 |
| lineage2.2 | 6 |
| La1.8.1 | 3 |
| lineage4.8;La3 | 2 |
| lineage4.1.2 | 1 |
| lineage5.1.4 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4;lineage1.1 | 1 |
| lineage3.1 | 3 |
| lineage4.9;lineage3.1.2.1 | 1 |
| lineage4.7 | 2 |
| lineage4.1.3;lineage1.1.2 | 1 |
| lineage4.3.3 | 4 |
| lineage4.2.1 | 3 |
| lineage2.2.1.1 | 4 |
| lineage4.1.2.1.1 | 1 |
| lineage5.2 | 2 |
| lineage4.6.2.2 | 5 |
| lineage4.3.4.1 | 4 |
| lineage4.1 | 1 |
| lineage3;La3 | 1 |
| lineage4.1.2.1;lineage2.2.1 | 1 |
| La1 | 2 |
| lineage4.1.3 | 2 |
| lineage4;lineage3.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage3 | 4 |
| lineage4.5 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4.9.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage1.1.3.2 | 1 |
| lineage1.2.2.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.8;lineage4.1 | 1 |
| lineage6.1.3 | 1 |
| lineage6 | 1 |
| lineage6.3.1 | 1 |
| La3 | 1 |
| lineage1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 347 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR25827682 | Other | None | ERR11081257 | Other | lineage4.8 | None | ERR11081258 | Other | lineage4.8 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR26159043 | Other | lineage4.9 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675455 | Sensitive | lineage4 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675477 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675229 | Other | lineage4 | None | SRR3675221 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR176643 | HR-TB | None | SRR3675236 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675279 | Other | None | SRR3675510 | Other | None | SRR3675311 | Other | None | SRR3675312 | HR-TB | lineage4 | None | ERR4815752 | Other | lineage4.9 | None | ERR176751 | HR-TB | None | ERR2229542 | Other | lineage4.8 | None | ERR2027263 | Other | lineage4 | None | SRR3675522 | Other | None | SRR3675547 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | ERR4816999 | Other | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR4816151 | Other | lineage4.8 | None | ERR212033 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675572 | Other | None | ERR4817060 | RR-TB | None | SRR3675574 | HR-TB | None | SRR3675571 | HR-TB | None | ERR212121 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816585 | Other | lineage2.2 | None | ERR4816466 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4817735 | Other | lineage4.8 | None | ERR4818021 | Other | La1.8.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | SRR7496472 | Other | None | ERR4818347 | Other | lineage4.1.2 | None | ERR234659 | HR-TB | None | ERR2513283 | Other | lineage5.1.4 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4818394 | Other | lineage4.9 | None | SRR5007188 | Other | lineage4 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR4820335 | Other | lineage4.1.2.1 | None | ERR3275201 | Sensitive | lineage4.8 | nl | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341302 | HR-TB | None | SRR5341222 | Sensitive | lineage3.1 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR2514390 | Sensitive | lineage4.9;lineage3.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR2514692 | Other | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341333 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | SRR6045503 | HR-TB | None | ERR2446570 | Sensitive | lineage4.8 | nl | ERR4822101 | Sensitive | lineage4.1.3;lineage1.1.2 | None | ERR2693257 | Other | None | SRR6045526 | HR-TB | None | SRR6045555 | HR-TB | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046397 | Other | None | SRR6046362 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046802 | Other | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR4972483 | Pre-XDR-TB | lineage4.1.2.1.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR6785267 | Other | lineage2.2.1 | None | SRR6785268 | Sensitive | lineage4.2.1 | None | ERR294266 | HR-TB | None | SRR6785413 | Other | lineage2.2.1 | None | SRR6789626 | Other | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR6785527 | Sensitive | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR502943 | HR-TB | None | ERR502532 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7585435 | Other | lineage4.9 | None | SRR7535086 | Other | None | ERR1023302 | MDR-TB | lineage3;La3 | None | ERR323043 | HR-TB | None | ERR11466499 | Other | lineage4.3.4.1 | None | ERR11488822 | Pre-XDR-TB | lineage4.1.2.1;lineage2.2.1 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR1035157 | Other | lineage4.9 | None | ERR1023525 | HR-TB | lineage4 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR3283010 | Other | La1 | None | ERR3283027 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR363449 | Sensitive | lineage4 | None | ERR3283051 | Other | lineage4.9 | None | ERR349264 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR3283036 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797069 | Other | None | ERR3797081 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR400336 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4797313 | HR-TB | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4407463 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4798262 | HR-TB | La1 | None | ERR4798431 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811022 | HR-TB | None | ERR4812155 | Sensitive | None | ERR4811030 | Sensitive | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR5336148 | Other | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR702406 | HR-TB | None | ERR6866410 | Sensitive | None | ERR702404 | HR-TB | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736874 | HR-TB | None | ERR245758 | Other | lineage4.9.1 | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR736835 | HR-TB | None | ERR736848 | HR-TB | None | ERR9117709 | HR-TB | None | ERR7821163 | Other | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR7821210 | Sensitive | lineage1.2.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786604 | Other | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786569 | Other | lineage4.8 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR990545 | Other | lineage3 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787197 | Other | None | ERR9787165 | Other | lineage6 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1169194 | Other | None | SRR1167384 | Other | lineage4 | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172857 | MDR-TB | None | SRR1173118 | Other | None | SRR1173166 | Other | lineage4.9 | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1173363 | HR-TB | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173384 | Other | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173778 | Other | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175074 | MDR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1184294 | HR-TB | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184381 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12416824 | HR-TB | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR15368973 | Other | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR17658565 | Other | lineage3 | None | SRR16156832 | RR-TB | None | SRR1710057 | Other | lineage2.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR18213713 | HR-TB | lineage4.5 | None |
|---|
