Rv0668 - c.234C>T
Drug resistance types
55 Sensitive
14 RR-TB
104 HR-TB
30 MDR-TB
17 Pre-XDR-TB
0 XDR-TB
154 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 29 |
| lineage3.1 | 2 |
| 110 | |
| lineage4.3.3 | 6 |
| lineage2 | 2 |
| lineage1.1.3 | 2 |
| lineage4.9 | 59 |
| lineage4.3.4.1 | 2 |
| lineage2.1 | 3 |
| La1.8.1 | 6 |
| lineage4.5 | 3 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage1.2.1.2 | 1 |
| lineage1.2.2 | 1 |
| lineage2.2 | 8 |
| lineage4 | 46 |
| lineage4.1.2.1 | 14 |
| lineage4.3 | 1 |
| lineage4.8 | 10 |
| lineage4.3.2.1 | 3 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.1;lineage1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.1 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4;lineage1.1 | 1 |
| lineage3 | 5 |
| lineage4.6.2.2 | 5 |
| lineage4.7 | 2 |
| lineage1.1.2 | 2 |
| lineage4.9;lineage2.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage3.1.1 | 1 |
| lineage5.2 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.2.1 | 2 |
| lineage1.1.3.1 | 1 |
| La2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.4.2 | 1 |
| lineage4.4.1.2 | 2 |
| lineage4.9.1 | 1 |
| lineage3;La3 | 1 |
| lineage6.1.1 | 2 |
| lineage4.1.3 | 2 |
| La1.3 | 4 |
| lineage4.9;La1.3 | 1 |
| La1.2 | 2 |
| La1 | 1 |
| lineage3.1.2 | 1 |
| lineage4.5;lineage2.2.1 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.8;lineage4.1 | 2 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage6.1.3 | 1 |
| lineage4.6.1.1 | 1 |
| La3 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.1.2 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 374 |
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR11972258 | HR-TB | lineage1.1.3 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12142341 | HR-TB | None | SRR13837498 | Sensitive | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR14782405 | HR-TB | None | SRR13837707 | Other | lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | SRR15368973 | Other | None | SRR1710057 | Other | lineage2.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19303884 | HR-TB | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19304036 | HR-TB | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR22424765 | MDR-TB | lineage4 | None | ERR4815604 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675465 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675236 | HR-TB | None | SRR3675222 | Other | None | SRR3675501 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675246 | Sensitive | lineage4 | None | ERR176568 | Other | lineage4.3 | None | SRR3675270 | HR-TB | None | ERR176740 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | ERR4814976 | Other | lineage4.9 | None | SRR3675412 | Sensitive | lineage4.9 | None | ERR176751 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | SRR3675510 | Other | None | ERR4816964 | Other | lineage4.9 | None | ERR2229084 | Sensitive | lineage4.8 | dk | ERR4816999 | Other | None | ERR2027263 | Other | lineage4 | None | ERR4815944 | HR-TB | lineage4.1.2.1 | None | ERR4817060 | RR-TB | None | ERR212033 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | SRR3675572 | Other | None | SRR3675571 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816466 | HR-TB | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816852 | Other | lineage4.9 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4817735 | Other | lineage4.8 | None | SRR4033483 | HR-TB | lineage4.3.2.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | SRR7496472 | Other | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR4818021 | Other | La1.8.1 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR2446566 | Other | lineage4.1 | None | SRR5007188 | Other | lineage4 | None | ERR4818615 | Other | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341453 | Sensitive | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR4819093 | Other | lineage4.3.3 | None | SRR5341387 | Other | lineage4 | None | SRR5341456 | Other | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819357 | Other | lineage4.9 | None | ERR4820335 | Other | lineage4.1.2.1 | None | SRR5341425 | Other | lineage4 | None | SRR5266542 | Pre-XDR-TB | lineage2.2.1 | ru | SRR5341455 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341333 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341330 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341469 | Other | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045450 | Other | lineage4.9 | None | SRR5341470 | HR-TB | None | SRR5431730 | Other | La1.8.1 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR5535683 | Sensitive | lineage1.2.1.2.1 | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR5535933 | HR-TB | None | ERR2706950 | MDR-TB | lineage5.2 | cd | SRR6045519 | HR-TB | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4821578 | Other | lineage4.1.2.1 | None | SRR6045053 | Other | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6045957 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045817 | Sensitive | lineage4.8 | gb | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6045267 | RR-TB | lineage4 | None | SRR6046299 | HR-TB | None | SRR6045399 | Other | None | SRR6046305 | Other | lineage4.9 | None | SRR6046250 | Other | lineage4.9 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | ERR4830353 | Other | None | SRR6046397 | Other | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046492 | Other | None | SRR6046540 | HR-TB | None | ERR485006 | HR-TB | lineage4.9 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6511621 | HR-TB | None | ERR323037 | HR-TB | lineage4 | None | SRR6046737 | Other | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831117 | HR-TB | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6785267 | Other | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4972574 | MDR-TB | lineage4.1.2.1.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | SRR6785227 | Other | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR6785268 | Sensitive | lineage4.2.1 | None | SRR6785527 | Sensitive | lineage2.2.1 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR6797797 | Sensitive | lineage1.1.3.1 | None | SRR6789626 | Other | None | SRR6832644 | Other | lineage4.3.3 | None | ERR294266 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR502524 | HR-TB | La2 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR8217918 | HR-TB | None | SRR7496517 | Other | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | SRR7496509 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | DRR188519 | Other | lineage4.4.2 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR323039 | HR-TB | None | ERR323053 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323066 | Sensitive | lineage4 | None | ERR1035122 | Sensitive | None | ERR323085 | Sensitive | lineage4 | None | ERR037504 | Other | lineage4.9.1 | None | ERR1023302 | MDR-TB | lineage3;La3 | None | ERR1063896 | Sensitive | None | ERR1035157 | Other | lineage4.9 | None | ERR3797058 | Other | lineage4.9 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283058 | Other | lineage4.9 | None | ERR3439265 | Other | lineage4.9 | None | ERR349264 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR3797046 | HR-TB | None | ERR11049020 | Other | lineage4.8 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3468613 | RR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797071 | Other | lineage4.9 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797069 | Other | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4024991 | Other | None | ERR4596910 | Sensitive | lineage4 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769552 | Other | La1.3 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769516 | Other | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769418 | Other | La1.2 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4798262 | HR-TB | La1 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4769555 | Other | La1.3 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4799025 | Pre-XDR-TB | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800222 | Sensitive | lineage1.1.2 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6359069 | Other | lineage4.9 | None | ERR6866022 | Other | None | ERR702404 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811493 | HR-TB | None | ERR5336148 | Other | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6866639 | Other | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR736865 | HR-TB | None | ERR736867 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR752229 | Other | lineage4.5 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR9786443 | Sensitive | lineage4.8 | None | ERR9117709 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9657191 | Sensitive | lineage1.1.3 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR987722 | HR-TB | None | SRR10315567 | Other | lineage2.2.1 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR990545 | Other | lineage3 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1169249 | Other | La3 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1172728 | MDR-TB | None | SRR1169306 | Other | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1172717 | Other | lineage4.9 | None | SRR1172817 | HR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173118 | Other | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173153 | HR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173400 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1175074 | MDR-TB | None | SRR1173706 | Other | lineage4.9 | None | SRR1173740 | Other | None | SRR1173777 | Other | lineage4 | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1173778 | Other | None | SRR1174897 | HR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175090 | Other | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1183049 | Other | lineage2.2 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None |
|---|
