TB-Profiler result

Run: ERR4821578
Summary

Run ID: ERR4821578

Sample name:

Date: 01-04-2023 17:19:55

Number of reads: 1555803

Percentage reads mapped: 87.27

Strain: lineage4.1.2.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 0.99
lineage4.1.2 Euro-American T;H None 0.99
lineage4.1.2.1 Euro-American (Haarlem) T1;H1 RD182 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.67 streptomycin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.5 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7595 c.294C>G synonymous_variant 0.15
gyrA 7601 c.300C>G synonymous_variant 0.15
gyrA 7607 c.306C>G synonymous_variant 0.15
gyrA 7622 c.321C>T synonymous_variant 0.14
gyrA 7625 c.324G>C synonymous_variant 0.14
gyrA 7631 c.330G>C synonymous_variant 0.13
gyrA 7637 c.336C>G synonymous_variant 0.13
gyrA 7683 c.382A>C synonymous_variant 0.12
gyrA 8111 c.810G>C synonymous_variant 0.17
gyrA 8121 c.820T>C synonymous_variant 0.16
gyrA 8129 c.828T>C synonymous_variant 0.13
gyrA 8135 c.834C>G synonymous_variant 0.14
gyrA 8156 c.855T>C synonymous_variant 0.15
gyrA 8168 c.867A>G synonymous_variant 0.15
gyrA 8177 c.876A>C synonymous_variant 0.14
gyrA 8189 c.888G>C synonymous_variant 0.15
gyrA 8198 c.897T>C synonymous_variant 0.14
gyrA 8711 c.1410A>C synonymous_variant 0.14
gyrA 8829 c.1528T>C synonymous_variant 0.13
gyrA 8891 c.1590G>A synonymous_variant 0.14
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491591 p.Lys270Met missense_variant 0.91
mshA 575679 p.Asn111Ser missense_variant 0.97
rpoB 760060 p.Tyr85Leu missense_variant 0.13
rpoB 760091 c.285G>C synonymous_variant 0.16
rpoB 760101 c.295T>C synonymous_variant 0.14
rpoB 760112 c.306T>C synonymous_variant 0.14
rpoB 760115 c.309C>T synonymous_variant 0.86
rpoB 760121 c.315T>C synonymous_variant 0.15
rpoB 760130 p.Asp108Glu missense_variant 0.17
rpoB 760139 c.333A>G synonymous_variant 0.13
rpoB 760142 c.336C>G synonymous_variant 0.14
rpoB 760181 c.375T>C synonymous_variant 0.15
rpoB 760196 c.390C>G synonymous_variant 0.16
rpoB 760223 c.417T>C synonymous_variant 0.16
rpoB 760235 c.429T>C synonymous_variant 0.14
rpoB 760406 c.600G>C synonymous_variant 0.19
rpoB 760412 c.606C>G synonymous_variant 0.19
rpoB 760424 c.618C>G synonymous_variant 0.14
rpoB 760430 c.624T>C synonymous_variant 0.16
rpoB 760661 c.855A>C synonymous_variant 0.16
rpoB 760670 c.864G>C synonymous_variant 0.16
rpoB 760674 c.868T>C synonymous_variant 0.19
rpoB 760679 c.873A>G synonymous_variant 0.19
rpoB 760683 c.877T>C synonymous_variant 0.21
rpoB 760946 c.1140A>G synonymous_variant 0.16
rpoB 761150 c.1344A>C synonymous_variant 0.12
rpoB 761165 c.1359G>C synonymous_variant 0.17
rpoB 761180 c.1374A>C synonymous_variant 0.17
rpoB 761189 c.1383T>C synonymous_variant 0.19
rpoB 761195 c.1389G>C synonymous_variant 0.16
rpoB 762185 c.2379G>C synonymous_variant 0.14
rpoB 762317 c.2511A>G synonymous_variant 0.17
rpoB 762329 c.2523G>C synonymous_variant 0.13
rpoB 762338 c.2532T>C synonymous_variant 0.22
rpoB 762347 c.2541T>C synonymous_variant 0.23
rpoB 762362 p.Glu852Asp missense_variant 0.19
rpoB 762369 c.2563T>C synonymous_variant 0.23
rpoC 763528 c.159G>A synonymous_variant 0.16
rpoC 763546 c.177A>G synonymous_variant 0.19
rpoC 763570 c.201G>C synonymous_variant 0.2
rpoC 763573 c.204G>C synonymous_variant 0.17
rpoC 763594 c.225C>T synonymous_variant 0.19
rpoC 763603 c.234C>T synonymous_variant 0.15
rpoC 763636 c.267T>C synonymous_variant 0.16
rpoC 763660 c.291T>G synonymous_variant 0.15
rpoC 763675 c.306C>G synonymous_variant 0.16
rpoC 763872 p.Gly168Ala missense_variant 0.12
rpoC 763876 p.Glu169Asp missense_variant 0.13
rpoC 763879 c.510A>G synonymous_variant 0.19
rpoC 763888 c.519G>C synonymous_variant 0.21
rpoC 763891 c.522G>C synonymous_variant 0.29
rpoC 763894 c.525A>G synonymous_variant 0.21
rpoC 763900 c.531G>C synonymous_variant 0.22
rpoC 763936 c.567C>G synonymous_variant 0.21
rpoC 763939 c.570G>A synonymous_variant 0.21
rpoC 763942 c.573C>G synonymous_variant 0.21
rpoC 763948 c.579G>A synonymous_variant 0.24
rpoC 763949 c.580C>A synonymous_variant 0.22
rpoC 763954 c.585C>G synonymous_variant 0.22
rpoC 763963 c.594C>T synonymous_variant 0.25
rpoC 763987 c.618C>T synonymous_variant 0.26
rpoC 763991 p.Ile208Leu missense_variant 0.2
rpoC 763996 c.627T>C synonymous_variant 0.33
rpoC 764002 c.633C>G synonymous_variant 0.29
rpoC 764005 c.636G>C synonymous_variant 0.29
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.15
rpoC 764032 p.Asp221Glu missense_variant 0.17
rpoC 764040 p.Ser224Thr missense_variant 0.13
rpoC 764059 c.690G>T synonymous_variant 0.17
rpoC 764098 c.729A>G synonymous_variant 0.17
rpoC 764101 c.732C>G synonymous_variant 0.17
rpoC 764102 p.Val245Ile missense_variant 0.15
rpoC 764112 p.Tyr248Phe missense_variant 0.16
rpoC 764116 c.747C>T synonymous_variant 0.16
rpoC 764131 c.762T>C synonymous_variant 0.14
rpoC 764140 c.771C>T synonymous_variant 0.14
rpoC 764809 c.1440C>T synonymous_variant 0.16
rpoC 764815 c.1446A>G synonymous_variant 0.13
rpoC 764827 c.1458G>C synonymous_variant 0.15
rpoC 765150 p.Gly594Glu missense_variant 1.0
rpoC 765352 c.1983G>C synonymous_variant 0.13
rpoC 765383 p.Met672Leu missense_variant 0.15
rpoC 765553 c.2184C>T synonymous_variant 0.12
rpoC 765556 c.2187G>C synonymous_variant 0.17
rpoC 765559 c.2190G>C synonymous_variant 0.14
rpoC 765580 c.2211G>C synonymous_variant 0.17
rpoC 765625 c.2256C>G synonymous_variant 0.14
rpoC 765631 p.Asp754Glu missense_variant 0.14
rpoC 765700 c.2331T>C synonymous_variant 0.26
rpoC 765734 c.2365T>C synonymous_variant 0.22
rpoC 765739 c.2370G>T synonymous_variant 0.22
rpoC 765751 c.2382C>G synonymous_variant 0.2
rpoC 765753 p.Asp795Ala missense_variant 0.19
rpoC 765772 c.2403C>G synonymous_variant 0.12
rpoC 765784 c.2415C>G synonymous_variant 0.12
rpoC 765787 c.2418C>T synonymous_variant 0.12
rpoC 765793 c.2424C>G synonymous_variant 0.13
rpoC 765796 c.2427C>T synonymous_variant 0.12
rpoC 765883 c.2514C>G synonymous_variant 0.15
rpoC 765886 c.2517C>G synonymous_variant 0.18
rpoC 765892 c.2523T>C synonymous_variant 0.18
rpoC 765937 c.2568T>C synonymous_variant 0.14
rpoC 765967 c.2598C>T synonymous_variant 0.14
rpoC 766357 c.2988C>T synonymous_variant 0.13
rpoC 766381 c.3012C>T synonymous_variant 0.21
rpoC 766384 c.3015A>G synonymous_variant 0.21
rpoC 766390 c.3021C>T synonymous_variant 0.16
rpoC 766408 c.3039C>G synonymous_variant 0.18
rpoC 766411 c.3042C>G synonymous_variant 0.17
rpoC 766426 c.3057C>T synonymous_variant 0.15
rpoC 766765 c.3396A>C synonymous_variant 0.14
rpoC 766774 c.3405T>C synonymous_variant 0.15
rpoC 766801 c.3432C>G synonymous_variant 0.17
rpoC 766804 c.3435A>G synonymous_variant 0.17
rpoC 766963 c.3594T>C synonymous_variant 0.14
rpoC 766972 c.3603G>C synonymous_variant 0.14
rpoC 766996 c.3627C>T synonymous_variant 0.26
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.22
rpoC 767014 c.3645G>C synonymous_variant 0.21
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 0.17
rpoC 767134 c.3765C>A synonymous_variant 0.15
rpoC 767180 p.Ala1271Gln missense_variant 0.14
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775975 c.2506T>C synonymous_variant 0.16
mmpL5 775981 p.Leu834Met missense_variant 0.15
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781649 c.90T>C synonymous_variant 0.12
rpsL 781808 c.249C>T synonymous_variant 0.17
rpsL 781811 c.252C>T synonymous_variant 0.17
rplC 800771 c.-38C>T upstream_gene_variant 0.22
rplC 800794 c.-15A>G upstream_gene_variant 0.13
rplC 800796 c.-13A>G upstream_gene_variant 0.13
rplC 800798 c.-10_-9delGG upstream_gene_variant 0.14
rplC 800814 c.6A>G synonymous_variant 0.15
rplC 800817 c.9A>T synonymous_variant 0.14
rplC 800844 c.36T>C synonymous_variant 0.15
rplC 800934 c.126C>G synonymous_variant 0.12
rplC 800937 c.129A>G synonymous_variant 0.12
rplC 800946 c.138T>G synonymous_variant 0.12
rplC 801367 p.Ala187Thr missense_variant 0.14
rplC 801402 c.594T>C synonymous_variant 0.15
rplC 801405 c.597T>C synonymous_variant 0.18
fbiC 1304580 c.1650T>C synonymous_variant 0.14
fbiC 1304613 c.1683T>C synonymous_variant 0.15
fbiC 1304856 c.1926C>G synonymous_variant 0.33
fbiC 1304862 c.1932G>A synonymous_variant 0.14
fbiC 1304875 p.Ile649Val missense_variant 0.12
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.2
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.2
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.5
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.5
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.75
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.75
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.43
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.43
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.43
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.57
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.5
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 1.0
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.5
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.5
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.5
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.5
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.5
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 1.0
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.67
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.67
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.71
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.57
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.29
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.75
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.33
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.5
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.5
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 1.0
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.5
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.5
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.5
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.5
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.5
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.67
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 1.0
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 1.0
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.57
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.57
rrs 1473008 n.1163C>G non_coding_transcript_exon_variant 0.57
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.57
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.33
rrs 1473038 n.1193A>C non_coding_transcript_exon_variant 0.67
rrs 1473044 n.1199C>G non_coding_transcript_exon_variant 0.67
rrs 1473053 n.1208T>A non_coding_transcript_exon_variant 0.5
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.38
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.38
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.44
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.44
rrs 1473070 n.1225G>C non_coding_transcript_exon_variant 0.44
rrs 1473071 n.1226C>A non_coding_transcript_exon_variant 0.44
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.5
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.89
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.8
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.8
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.6
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.8
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.8
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.8
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.6
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.67
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.5
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.29
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 1.0
inhA 1674756 c.555T>C synonymous_variant 0.15
inhA 1674780 c.579T>G synonymous_variant 0.14
rpsA 1833847 c.306C>G synonymous_variant 0.16
rpsA 1833856 c.315A>G synonymous_variant 0.19
rpsA 1833874 c.333T>C synonymous_variant 0.17
rpsA 1834249 c.708T>C synonymous_variant 0.15
rpsA 1834261 c.720A>G synonymous_variant 0.15
rpsA 1834264 c.723G>C synonymous_variant 0.15
rpsA 1834306 c.765T>C synonymous_variant 0.17
rpsA 1834451 c.910T>C synonymous_variant 0.13
rpsA 1834489 c.948T>C synonymous_variant 0.15
rpsA 1834528 c.987T>C synonymous_variant 0.14
rpsA 1834540 c.999G>C synonymous_variant 0.13
rpsA 1834546 c.1005T>C synonymous_variant 0.17
rpsA 1834555 c.1014T>G synonymous_variant 0.15
rpsA 1834609 c.1068T>C synonymous_variant 0.23
rpsA 1834618 c.1077G>C synonymous_variant 0.23
rpsA 1834633 c.1092A>G synonymous_variant 0.22
rpsA 1834639 c.1098T>C synonymous_variant 0.19
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517950 c.-165C>G upstream_gene_variant 0.19
kasA 2517989 c.-126T>C upstream_gene_variant 0.16
kasA 2517993 c.-122G>T upstream_gene_variant 0.13
kasA 2518019 c.-96A>G upstream_gene_variant 0.16
kasA 2518025 c.-90G>C upstream_gene_variant 0.13
kasA 2518076 c.-39C>T upstream_gene_variant 1.0
thyA 3074334 c.138T>C synonymous_variant 0.12
thyA 3074349 c.123T>C synonymous_variant 0.13
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
rpoA 3877613 p.Ile299Val missense_variant 0.15
rpoA 3877743 c.765T>C synonymous_variant 0.19
rpoA 3877764 c.744C>G synonymous_variant 0.23
rpoA 3877770 c.738A>G synonymous_variant 0.24
rpoA 3877776 c.732T>C synonymous_variant 0.24
rpoA 3877782 c.726T>C synonymous_variant 0.27
rpoA 3877791 c.717C>G synonymous_variant 0.27
rpoA 3877818 c.690A>G synonymous_variant 0.22
rpoA 3878061 c.447G>C synonymous_variant 0.12
rpoA 3878070 c.438T>C synonymous_variant 0.14
rpoA 3878118 c.390T>C synonymous_variant 0.13
rpoA 3878271 c.237T>C synonymous_variant 0.12
rpoA 3878292 c.216T>C synonymous_variant 0.17
rpoA 3878298 c.210A>G synonymous_variant 0.19
rpoA 3878304 c.204G>C synonymous_variant 0.14
rpoA 3878665 c.-158A>G upstream_gene_variant 0.18
clpC1 4038320 c.2385G>C synonymous_variant 0.13
clpC1 4038356 c.2349T>C synonymous_variant 0.22
clpC1 4038359 c.2346A>G synonymous_variant 0.21
clpC1 4038368 c.2337T>C synonymous_variant 0.2
clpC1 4038388 c.2317T>C synonymous_variant 0.24
clpC1 4038392 c.2313C>T synonymous_variant 0.25
clpC1 4038398 c.2307G>T synonymous_variant 0.19
clpC1 4038403 c.2302T>C synonymous_variant 0.18
clpC1 4038407 c.2298G>C synonymous_variant 0.21
clpC1 4038419 c.2286T>C synonymous_variant 0.19
clpC1 4038530 p.Glu725Asp missense_variant 0.19
clpC1 4038596 c.2109A>G synonymous_variant 0.32
clpC1 4038623 c.2082A>G synonymous_variant 0.2
clpC1 4038640 p.Asp689Asn missense_variant 0.23
clpC1 4038653 c.2052C>T synonymous_variant 0.2
clpC1 4038658 p.Lys683Gln missense_variant 0.21
clpC1 4038661 p.Ser682Thr missense_variant 0.21
clpC1 4038662 c.2043T>C synonymous_variant 0.22
clpC1 4038671 c.2034T>C synonymous_variant 0.28
clpC1 4038683 c.2022T>C synonymous_variant 0.28
clpC1 4038695 c.2010C>G synonymous_variant 0.2
clpC1 4038701 c.2004G>C synonymous_variant 0.12
clpC1 4038704 c.2001T>C synonymous_variant 0.12
clpC1 4039112 c.1593C>G synonymous_variant 0.13
clpC1 4039142 c.1563A>G synonymous_variant 0.17
clpC1 4039145 c.1560G>C synonymous_variant 0.17
clpC1 4039169 p.Glu512Asp missense_variant 0.15
clpC1 4039172 c.1533A>G synonymous_variant 0.15
clpC1 4039352 c.1353C>G synonymous_variant 0.12
clpC1 4039391 c.1314T>G synonymous_variant 0.17
clpC1 4039430 c.1275T>C synonymous_variant 0.13
clpC1 4039442 c.1263A>G synonymous_variant 0.13
clpC1 4039661 c.1044T>G synonymous_variant 0.2
clpC1 4039664 c.1041G>C synonymous_variant 0.25
clpC1 4039694 c.1011G>C synonymous_variant 0.27
clpC1 4039724 c.981A>G synonymous_variant 0.27
clpC1 4039751 c.954A>G synonymous_variant 0.21
clpC1 4039757 c.948A>G synonymous_variant 0.17
clpC1 4039760 c.945T>C synonymous_variant 0.17
clpC1 4039766 c.939T>C synonymous_variant 0.17
clpC1 4039769 c.936C>G synonymous_variant 0.16
clpC1 4039775 c.930G>C synonymous_variant 0.14
clpC1 4039778 c.927A>G synonymous_variant 0.14
clpC1 4039781 c.924G>C synonymous_variant 0.13
clpC1 4039820 c.885T>G synonymous_variant 0.12
clpC1 4039826 c.879C>G synonymous_variant 0.16
clpC1 4039831 c.874T>C synonymous_variant 0.15
clpC1 4039850 c.855T>C synonymous_variant 0.14
clpC1 4039865 c.840T>C synonymous_variant 0.18
clpC1 4039979 c.726C>G synonymous_variant 0.18
clpC1 4039988 c.717C>G synonymous_variant 0.2
clpC1 4039991 c.714G>C synonymous_variant 0.2
clpC1 4040021 c.684A>C synonymous_variant 0.28
clpC1 4040024 c.681A>G synonymous_variant 0.15
clpC1 4040033 c.672G>C synonymous_variant 0.28
clpC1 4040036 c.669C>G synonymous_variant 0.27
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.16
clpC1 4040093 c.612C>G synonymous_variant 0.2
clpC1 4040105 c.600C>G synonymous_variant 0.21
clpC1 4040147 c.558A>G synonymous_variant 0.15
clpC1 4040171 c.534C>G synonymous_variant 0.12
embC 4240780 c.918T>C synonymous_variant 0.13
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 0.9
embA 4245010 p.Ala593Val missense_variant 1.0
embA 4245044 c.1812G>C synonymous_variant 0.12
embA 4245060 c.1828T>C synonymous_variant 0.13
embA 4245083 c.1851A>C synonymous_variant 0.2
embA 4245089 c.1857G>C synonymous_variant 0.2
embA 4245092 c.1860C>G synonymous_variant 0.2
embA 4245101 c.1869G>C synonymous_variant 0.19
embA 4245137 c.1905T>C synonymous_variant 0.12
embA 4245182 c.1950T>C synonymous_variant 0.14
embA 4245198 p.Leu656Ile missense_variant 0.13
embB 4246184 c.-330A>C upstream_gene_variant 0.19
embB 4247893 c.1380C>T synonymous_variant 0.16
embB 4247899 p.Met462Ile missense_variant 0.16
embB 4247905 c.1392G>C synonymous_variant 0.16
embB 4247909 c.1396T>C synonymous_variant 0.19
embB 4247932 c.1419C>G synonymous_variant 0.15
embB 4247940 p.Leu476Trp missense_variant 0.17
embB 4247945 c.1432T>C synonymous_variant 0.17
embB 4248097 c.1584C>G synonymous_variant 0.14
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407635 p.Thr190Ala missense_variant 1.0