Rv0010c - c.-47G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
80 Sensitive
5 RR-TB
7 HR-TB
65 MDR-TB
42 Pre-XDR-TB
3 XDR-TB
14 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 10 |
| lineage4.1.1.1 | 11 |
| lineage3.1.2 | 30 |
| lineage2.2.1 | 67 |
| lineage4.3 | 2 |
| lineage5.1.1 | 1 |
| lineage4.5 | 5 |
| lineage4.8 | 25 |
| lineage4.3.2 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage1.1.2 | 6 |
| lineage4.4.1.1 | 1 |
| lineage4.1.2.1 | 9 |
| lineage2.2.1.1 | 4 |
| lineage4.1.2 | 3 |
| lineage4.3.2.1 | 10 |
| lineage1.1.2;lineage2 | 1 |
| lineage2.2.2 | 1 |
| lineage4.3.4.2 | 3 |
| lineage4.2.2 | 1 |
| lineage2.2.1.2 | 3 |
| lineage4.2.1 | 3 |
| lineage1.1.2;lineage3.1.1;lineage4.6.1.1 | 1 |
| lineage3.1.2;lineage4.3.3 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.3.3 | 3 |
| lineage1.2.2.2;lineage3.1.2 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.6.1.2 | 2 |
| lineage1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage1;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.4.2 | 1 |
| lineage4.1 | 1 |
| lineage1.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 216 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2510309 | MDR-TB | lineage3 | pk | SRR7070447 | Sensitive | lineage4.1.1.1 | None | ERR4799050 | Pre-XDR-TB | lineage3.1.2 | None | SAMEA2535200 | MDR-TB | lineage2.2.1 | uz | SRR2100670 | Other | lineage2.2.1 | None | ERR1193842 | Pre-XDR-TB | lineage4.3 | iq | ERR3170422 | Sensitive | lineage5.1.1 | gh | SRR7516305 | Pre-XDR-TB | lineage2.2.1 | None | SRR25206859 | MDR-TB | lineage4.5 | None | SRR21690171 | Sensitive | lineage4.8 | None | SRR28858540 | Sensitive | lineage2.2.1 | None | SRR30182811 | Sensitive | lineage4.3.2 | None | SRR28351585 | Pre-XDR-TB | lineage3.1.2 | None | SRR3724960 | Sensitive | lineage4.8 | pe | ERR4553450 | MDR-TB | lineage2.2.1 | None | ERR10849242 | Sensitive | lineage4.8 | None | ERR9992705 | XDR-TB | lineage4.3.4.2.1 | None | SRR21690052 | Sensitive | lineage4.8 | None | SRR12882469 | Sensitive | lineage1.1.2 | None | SRR6832761 | Sensitive | lineage4.8 | None | ERR2515451 | Sensitive | lineage4.4.1.1 | za | SRR14782426 | Sensitive | lineage4.8 | None | ERR9121446 | Sensitive | lineage4.1.2.1 | None | SRR12882542 | Sensitive | lineage1.1.2 | None | ERR4821578 | Sensitive | lineage4.1.2.1 | None | ERR3276076 | Sensitive | lineage4.8 | nl | SRR25207014 | MDR-TB | lineage2.2.1.1 | None | ERR3275224 | Other | lineage4.1.2 | nl | ERR13261479 | Pre-XDR-TB | lineage3.1.2 | None | SRR1196540 | MDR-TB | lineage4.3.2.1 | None | SRR21689615 | Sensitive | lineage4.8 | None | DRR474051 | Other | lineage2.2.1 | None | SRR29356663 | Sensitive | lineage4.8 | None | ERR7902646 | Sensitive | lineage1.1.2;lineage2 | None | DRR130165 | Pre-XDR-TB | lineage2.2.2 | None | SRR29356829 | Sensitive | lineage4.8 | None | ERR551812 | Other | lineage4.3.4.2 | None | SRR1735581 | Sensitive | lineage2.2.1 | None | SRR1735582 | Sensitive | lineage2.2.1 | None | SRR29356773 | HR-TB | lineage2.2.1 | None | SRR29356740 | Sensitive | lineage4.8 | None | SRR25515684 | Sensitive | lineage2.2.1 | None | SRR25628553 | MDR-TB | lineage4.5 | None | SRR28351377 | MDR-TB | lineage2.2.1 | None | ERR11082236 | MDR-TB | lineage4.8 | None | ERR4797430 | Sensitive | lineage3 | in | ERR4797531 | Pre-XDR-TB | lineage3.1.2 | in | ERR4796779 | Pre-XDR-TB | lineage3.1.2 | in | ERR4798378 | Pre-XDR-TB | lineage3.1.2 | in | ERR4799756 | MDR-TB | lineage3.1.2 | in | ERR4799976 | Pre-XDR-TB | lineage3.1.2 | in | ERR13285113 | MDR-TB | lineage4.8 | None | ERR4800192 | MDR-TB | lineage3.1.2 | in | SRR11033651 | MDR-TB | lineage2.2.1 | None | DRR473699 | Sensitive | lineage4.2.2 | None | ERR4797906 | HR-TB | lineage3.1.2 | in | ERR4800501 | MDR-TB | lineage3.1.2 | in | SRR24223000 | Sensitive | lineage4.8 | None | ERR4800585 | Pre-XDR-TB | lineage3.1.2 | in | ERR4800594 | Pre-XDR-TB | lineage3.1.2 | in | ERR553191 | MDR-TB | lineage2.2.1 | None | SRR25628554 | MDR-TB | lineage4.5 | None | SRR21689946 | Sensitive | lineage4.1.2.1 | None | SRR21690805 | Sensitive | lineage4.8 | None | SRR16058460 | Sensitive | lineage3 | None | SRR28119738 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811301 | MDR-TB | lineage2.2.1.2 | cn | ERR7911186 | RR-TB | lineage2.2.1.1 | vn | ERR5865359 | MDR-TB | lineage2.2.1 | None | SRR28044511 | MDR-TB | lineage1.1.2 | None | ERR4818650 | Sensitive | lineage4.1.1.1 | gb | ERR4818958 | Sensitive | lineage4.1.1.1 | gb | ERR4819402 | Sensitive | lineage4.1.1.1 | gb | ERR2514899 | Sensitive | lineage4.1.1.1 | gb | ERR2513969 | Sensitive | lineage4.1.1.1 | gb | ERR2513193 | Sensitive | lineage4.1.1.1 | gb | ERR2514695 | Sensitive | lineage3.1.2 | gb | ERR13285315 | Sensitive | lineage4.8 | None | SAMN02586021 | MDR-TB | lineage4.3.2.1 | za | SRR29017180 | MDR-TB | lineage2.2.1 | None | SRR23310891 | MDR-TB | lineage2.2.1 | None | SRR7516304 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866377 | RR-TB | lineage2.2.1 | None | ERR10465775 | Sensitive | lineage3 | None | ERR5865790 | MDR-TB | lineage2.2.1 | None | ERR234630 | MDR-TB | lineage2.2.1 | ru | SRR24222998 | Sensitive | lineage4.8 | None | SRR25515688 | Sensitive | lineage2.2.1 | None | ERR5866392 | Pre-XDR-TB | lineage2.2.1 | None | ERR230045 | Other | lineage2.2.1 | None | SRR1173001 | MDR-TB | lineage4.3.2.1 | None | ERR5866460 | MDR-TB | lineage2.2.1 | None | SRR1196572 | MDR-TB | lineage4.3.2.1 | None | ERR5865945 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797037 | Pre-XDR-TB | lineage3.1.2 | None | SRR1173210 | HR-TB | lineage4.3.2.1 | None | ERR11798544 | MDR-TB | lineage2.2.1 | None | ERR2446199 | Other | lineage4.1.2 | nl | SRR28859751 | HR-TB | lineage2.2.1 | None | ERR4195437 | Sensitive | lineage4.1.2.1 | None | ERR13266731 | Pre-XDR-TB | lineage3.1.2 | None | SRR1173516 | MDR-TB | lineage4.3.2.1 | None | ERR13284268 | MDR-TB | lineage2.2.1 | None | SRR26112281 | Sensitive | lineage2.2.1 | None | ERR4816277 | Sensitive | lineage4.2.1 | None | ERR2513405 | Other | lineage2.2.1 | None | SRR14801384 | HR-TB | lineage4.2.1 | None | SRR25207288 | MDR-TB | lineage4.5 | None | SRR30180327 | MDR-TB | lineage2.2.1 | None | ERR13266821 | Pre-XDR-TB | lineage3.1.2 | None | ERR5866393 | Pre-XDR-TB | lineage2.2.1 | None | SRR19392723 | Sensitive | lineage1.1.2;lineage3.1.1;lineage4.6.1.1 | None | SRR29356779 | Sensitive | lineage4.8 | None | ERR5865358 | MDR-TB | lineage2.2.1 | None | SRR6797338 | Other | lineage2.2.1.2 | None | ERR4799994 | Pre-XDR-TB | lineage3.1.2;lineage4.3.3 | None | ERR13285510 | Other | lineage2.2.1 | None | SRR12006588 | RR-TB | lineage1.2.1.2.1 | None | ERR2653156 | MDR-TB | lineage4.3.3 | None | ERR13262152 | HR-TB | lineage3.1.2 | None | SRR13232454 | MDR-TB | lineage2.2.1 | None | ERR9125872 | Sensitive | lineage3 | None | ERR13267053 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231242 | Sensitive | lineage3 | None | SRR1175091 | MDR-TB | lineage4.3.2.1 | None | SRR7516443 | MDR-TB | lineage2.2.1 | None | SRR29356759 | Sensitive | lineage4.8 | None | ERR2307603 | MDR-TB | lineage2.2.1 | None | ERR553192_ERR553191 | MDR-TB | lineage2.2.1 | None | ERR4799912 | Pre-XDR-TB | lineage1.2.2.2;lineage3.1.2 | in | ERR5866461 | MDR-TB | lineage2.2.1 | None | SRR7069549 | Sensitive | lineage3.1.2 | None | ERR4800344 | Pre-XDR-TB | lineage3.1.2 | in | ERR4827770 | Sensitive | lineage2.2.1;lineage3 | None | SRR11662558 | MDR-TB | lineage2.2.1 | None | SRR1184361 | MDR-TB | lineage4.3.2.1 | None | SRR28044510 | MDR-TB | lineage1.1.2 | None | SRR28045937 | Pre-XDR-TB | lineage3 | None | ERR4831406 | Sensitive | lineage4.2.1 | de | SRR25206946 | MDR-TB | lineage2.2.1.2 | None | ERR5865789 | MDR-TB | lineage2.2.1 | None | ERR2707174 | MDR-TB | lineage4.6.1.2 | cd | SRR19428540 | Sensitive | lineage1;lineage3.1.1;lineage4.2.2.2 | None | SRR2101320 | Sensitive | lineage2.2.1 | None | ERR234562 | MDR-TB | lineage2.2.1 | ru | ERR2517123 | MDR-TB | lineage3.1.2 | gb | ERR2516480 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR2516520 | Sensitive | lineage4.3.2 | pe | ERR2517563 | Other | lineage4.1.2 | nl | ERR4195241 | Sensitive | lineage4.1.2.1 | None | SRR25515647 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096539 | Sensitive | lineage3 | None | SRR24223002 | Sensitive | lineage4.8 | None | SRR19415697 | Other | lineage1;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | None | SRR16087953 | MDR-TB | lineage2.2.1 | None | SRR21689944 | Sensitive | lineage4.1.2.1 | None | SRR16370553 | RR-TB | lineage2.2.1.1 | None | SRR26937144 | RR-TB | lineage2.2.1.1 | None | SRR5065343 | Other | lineage2.2.1 | vn | ERR4798685 | XDR-TB | lineage3.1.2 | in | ERR6866257 | Sensitive | lineage4.3 | None | ERR4799874 | Pre-XDR-TB | lineage3.1.2 | in | SRR7070302 | Sensitive | lineage4.1.1.1 | None | SRR1184355 | MDR-TB | lineage4.3.2.1 | None | SRR1735579 | Sensitive | lineage2.2.1 | None | SRR21689943 | Sensitive | lineage4.1.2.1 | None | ERR8774581 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992657 | XDR-TB | lineage4.3.4.2.1 | None | DRR474066 | Other | lineage2.2.1 | None | SRR23862134 | Sensitive | lineage4.8 | None | SRR6257026 | MDR-TB | lineage2.2.1 | None | ERR11043744 | Sensitive | lineage3.1.2.1 | None | SRR29356645 | Sensitive | lineage4.8 | None | SRR29356814 | Sensitive | lineage4.8 | None | SRR7069019 | Sensitive | lineage4.1.1.1 | None | SRR29772457 | MDR-TB | lineage3.1.2 | None | ERR11798545 | MDR-TB | lineage2.2.1 | None | ERR13261350 | MDR-TB | lineage3.1.2 | None | SRR24222992 | Sensitive | lineage4.8 | None | ERR5866375 | MDR-TB | lineage2.2.1 | None | ERR13266113 | Pre-XDR-TB | lineage3.1.2 | None | SRR29231735 | MDR-TB | lineage4.6.1.2 | None | ERR4819947 | Sensitive | lineage4.1.1.1 | None | SRR10040547 | MDR-TB | lineage4.4.2 | None | SRR27450057 | Sensitive | lineage3 | None | ERR2512978 | Sensitive | lineage3 | gb | SRR21690140 | Other | lineage2.2.1 | None | SRR10397136 | Pre-XDR-TB | lineage2.2.1 | None | ERR13273290 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866376 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285623 | Sensitive | lineage4.1.2.1 | None | SRR6257072 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266822 | Pre-XDR-TB | lineage3.1.2 | None | SRR26112131 | HR-TB | lineage2.2.1 | None | SRR29772572 | MDR-TB | lineage3.1.2 | None | SRR20969661 | Sensitive | lineage4.5 | None | ERR5865885 | MDR-TB | lineage2.2.1 | None | SRR23340154 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798032 | Pre-XDR-TB | lineage3.1.2 | in | ERR13273332 | Sensitive | lineage4.8 | None | ERR4796673 | Pre-XDR-TB | lineage3.1.2 | in | SRR5153323 | MDR-TB | lineage2.2.1 | None | SRR28119711 | Pre-XDR-TB | lineage2.2.1 | None | ERR10680096 | MDR-TB | lineage4.1 | None | ERR5866391 | Pre-XDR-TB | lineage2.2.1 | None | ERR4822392 | Pre-XDR-TB | lineage2.2.1 | kg | ERR4798401 | MDR-TB | lineage1.2.2.2 | in | ERR4799881 | Sensitive | lineage1.1.2 | in | SAMN02585986 | MDR-TB | lineage4.3.2.1 | za | SRR28514708 | Sensitive | lineage4.3.3 | None | SRR28393276 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR28044509 | MDR-TB | lineage1.1.2 | None | ERR11775780 | MDR-TB | lineage2.2.1 | None | ERR4811885 | Sensitive | lineage4.3.3 | pe | SRR7070578 | Sensitive | lineage4.1.1.1 | None | SRR21689441 | Sensitive | lineage4.1.2.1 | None |
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