Run ID: ERR4821143
Sample name:
Date: 2024-04-16T07:24:43.367575
Number of reads: 41042
Percentage reads mapped: 3.1
Median coverage: 0.0
Strain: lineage4.9
Spoligotype:
Drug-resistance: Other
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4 | Euro-American | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | None | 1.0 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | rpsL | p.Lys88Arg | Assoc w R | |
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|---|---|---|---|---|---|---|
rpsL | 781821 | p.Lys88Arg | missense_variant | 1.0 | streptomycin | Assoc w R |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
rpoB | 760235 | c.429T>C | synonymous_variant | 0.82 | rifampicin | Not assoc w R - Interim |
rpoB | 761015 | c.1209G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 761021 | c.1215G>C | synonymous_variant | 1.0 | rifampicin | |
rpoB | 761027 | c.1221A>G | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 761036 | c.1230G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 761037 | c.1231T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 761054 | c.1248G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 761057 | c.1251G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 761064 | c.1258_1260delGCGinsTC | frameshift_variant&missense_variant | 1.0 | rifampicin | |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 1.0 | rifampicin | |
rpoB | 761102 | c.1296A>G | synonymous_variant | 1.0 | rifampicin | |
rpoB | 762143 | c.2337T>C | synonymous_variant | 1.0 | rifampicin | |
rpoB | 762149 | c.2343G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 762156 | c.2350_2352delGTGinsAC | frameshift_variant&missense_variant | 1.0 | rifampicin | |
rpoB | 762170 | c.2364C>A | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 762176 | c.2370T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 762185 | c.2379G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 762189 | c.2383_2385delATCinsCG | frameshift_variant&missense_variant | 1.0 | rifampicin | |
rpoB | 762209 | c.2403C>G | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 762212 | c.2406G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 762233 | c.2427G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 762245 | c.2439G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 762254 | c.2448T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 762275 | c.2469C>T | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 762278 | c.2472C>T | synonymous_variant | 1.0 | rifampicin | |
rpoB | 762284 | c.2478G>T | synonymous_variant | 1.0 | rifampicin | |
rpoB | 762293 | c.2487T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 762297 | p.Leu831Met | missense_variant | 1.0 | rifampicin | |
rpoB | 762305 | c.2499G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.93 | rifampicin | Uncertain significance |
rpoB | 762885 | c.3079C>T | synonymous_variant | 0.93 | rifampicin | Not assoc w R - Interim |
rpoB | 762899 | c.3093G>C | synonymous_variant | 0.95 | rifampicin | Not assoc w R - Interim |
rpoB | 762920 | c.3114C>T | synonymous_variant | 0.96 | rifampicin | Not assoc w R - Interim |
rpoB | 762929 | c.3123G>T | synonymous_variant | 0.96 | rifampicin | Not assoc w R - Interim |
rpoC | 762971 | c.-399G>C | upstream_gene_variant | 0.95 | rifampicin | |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.95 | rifampicin | |
rpoB | 762995 | c.3189G>T | synonymous_variant | 0.94 | rifampicin | Not assoc w R - Interim |
rpoB | 763014 | p.Met1070Leu | missense_variant | 1.0 | rifampicin | |
rpoB | 763017 | p.Gln1071Glu | missense_variant | 1.0 | rifampicin | |
rpoC | 763022 | c.-348C>G | upstream_gene_variant | 1.0 | rifampicin | |
rpoB | 763028 | c.3222T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 763038 | c.3232_3234delACCinsGG | frameshift_variant&missense_variant | 1.0 | rifampicin | |
rpoB | 763053 | c.3247_3249delTTGinsCC | frameshift_variant&missense_variant | 1.0 | rifampicin | |
rpoB | 763070 | c.3264T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 763075 | p.Thr1090Ile | missense_variant | 1.0 | rifampicin | |
rpoB | 763077 | p.Val1091Asn | missense_variant | 1.0 | rifampicin | |
rpoC | 763088 | c.-282C>A | upstream_gene_variant | 1.0 | rifampicin | |
rpoB | 763094 | c.3288G>T | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 763103 | c.-267G>C | upstream_gene_variant | 1.0 | rifampicin | |
rpoB | 763115 | c.3309T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoB | 763127 | c.3321G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 763483 | c.114G>C | synonymous_variant | 1.0 | rifampicin | |
rpoC | 763486 | c.117T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 763492 | c.123G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 763507 | c.138G>C | synonymous_variant | 1.0 | rifampicin | |
rpoC | 763528 | c.159G>C | synonymous_variant | 1.0 | rifampicin | |
rpoC | 763531 | c.162G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R |
rpoC | 763537 | c.168C>G | synonymous_variant | 1.0 | rifampicin | |
rpoC | 763546 | c.177A>G | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 763570 | c.201G>A | synonymous_variant | 1.0 | rifampicin | |
rpoC | 763573 | c.204G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 763594 | c.225C>T | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 763600 | c.231C>G | synonymous_variant | 1.0 | rifampicin | |
rpoC | 763603 | c.234C>T | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 763609 | c.240C>T | synonymous_variant | 1.0 | rifampicin | |
rpoC | 763615 | c.246G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 763618 | c.249C>T | synonymous_variant | 1.0 | rifampicin | |
rpoC | 763621 | c.252C>T | synonymous_variant | 1.0 | rifampicin | |
rpoC | 763622 | p.Ala85Ser | missense_variant | 1.0 | rifampicin | Uncertain significance |
rpoC | 763625 | p.Lys86Ala | missense_variant | 1.0 | rifampicin | |
rpoC | 763633 | c.264T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 763660 | c.291T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 763669 | c.300C>G | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 763708 | c.339G>C | synonymous_variant | 1.0 | rifampicin | |
rpoC | 763709 | c.340C>T | synonymous_variant | 1.0 | rifampicin | |
rpoC | 763714 | c.345G>T | synonymous_variant | 1.0 | rifampicin | |
rpoC | 763717 | c.348T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 763723 | c.354G>C | synonymous_variant | 1.0 | rifampicin | |
rpoC | 763729 | c.360G>C | synonymous_variant | 1.0 | rifampicin | |
rpoC | 763751 | p.Ile128Val | missense_variant | 1.0 | rifampicin | |
rpoC | 764410 | c.1041G>C | synonymous_variant | 1.0 | rifampicin | |
rpoC | 764548 | c.1179G>A | synonymous_variant | 1.0 | rifampicin | |
rpoC | 764554 | c.1185C>T | synonymous_variant | 1.0 | rifampicin | |
rpoC | 764560 | c.1191T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 764566 | c.1197C>G | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 764575 | c.1206T>G | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 764581 | c.1212T>C | synonymous_variant | 1.0 | rifampicin | |
rpoC | 764582 | p.Leu405Met | missense_variant | 1.0 | rifampicin | |
rpoC | 764602 | c.1233C>T | synonymous_variant | 1.0 | rifampicin | |
rpoC | 764605 | c.1236G>T | synonymous_variant | 1.0 | rifampicin | |
rpoC | 764611 | c.1242G>T | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 764626 | c.1257C>T | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 764632 | c.1263T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 764644 | c.1275G>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 764650 | c.1281G>T | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 764668 | c.1299C>T | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 764677 | c.1308C>G | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 764692 | c.1323C>T | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoC | 764706 | p.Leu446Gln | missense_variant | 1.0 | rifampicin | Uncertain significance |
rpsL | 781709 | c.150G>T | synonymous_variant | 1.0 | streptomycin | |
rpsL | 781715 | c.156T>C | synonymous_variant | 1.0 | streptomycin | |
rpsL | 781733 | c.174_176delGAGinsC | frameshift_variant&synonymous_variant | 1.0 | streptomycin | Uncertain significance |
rpsL | 781738 | p.Gln60Arg | missense_variant | 1.0 | streptomycin | |
rpsL | 781740 | c.182_183insAT | frameshift_variant | 1.0 | streptomycin | Uncertain significance |
rpsL | 781751 | c.192G>C | synonymous_variant | 1.0 | streptomycin | |
rpsL | 781760 | c.201T>C | synonymous_variant | 1.0 | streptomycin | |
rpsL | 781803 | c.244_246delGTGinsAC | frameshift_variant&missense_variant | 1.0 | streptomycin | Uncertain significance |
rpsL | 781811 | c.252C>T | synonymous_variant | 1.0 | streptomycin | |
rpsL | 781817 | c.258G>T | synonymous_variant | 1.0 | streptomycin | |
rpsL | 781832 | c.273T>G | synonymous_variant | 1.0 | streptomycin | |
rpsL | 781868 | c.309T>C | synonymous_variant | 1.0 | streptomycin | |
rpsL | 781871 | c.312G>C | synonymous_variant | 1.0 | streptomycin | |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.9 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.79 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Not assoc w R | |||||
amikacin | Uncertain significance | |||||
rrs | 1472278 | n.433C>T | non_coding_transcript_exon_variant | 0.67 | streptomycin | |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472279 | n.434T>C | non_coding_transcript_exon_variant | 0.67 | streptomycin | |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472285 | n.440A>G | non_coding_transcript_exon_variant | 0.67 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472290 | n.445C>T | non_coding_transcript_exon_variant | 0.67 | streptomycin | |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472297 | n.453_454delGT | non_coding_transcript_exon_variant | 0.64 | streptomycin | |
kanamycin | ||||||
capreomycin | ||||||
amikacin | ||||||
rrs | 1472301 | n.457_461delGGGTT | non_coding_transcript_exon_variant | 0.7 | streptomycin | |
kanamycin | ||||||
capreomycin | ||||||
amikacin | ||||||
rrs | 1472309 | n.464C>T | non_coding_transcript_exon_variant | 0.64 | streptomycin | |
kanamycin | ||||||
capreomycin | ||||||
amikacin | ||||||
rrs | 1472311 | n.466C>T | non_coding_transcript_exon_variant | 0.55 | streptomycin | Uncertain significance |
kanamycin | ||||||
capreomycin | ||||||
amikacin | ||||||
rrs | 1472314 | n.469A>G | non_coding_transcript_exon_variant | 0.7 | streptomycin | |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472315 | n.470T>G | non_coding_transcript_exon_variant | 0.7 | streptomycin | |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 1.0 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 1.0 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 1.0 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472973 | n.1128A>G | non_coding_transcript_exon_variant | 1.0 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 1.0 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 1.0 | streptomycin | Uncertain significance |
kanamycin | Not assoc w R | |||||
capreomycin | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 1.0 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Not assoc w R | |||||
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 1.0 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 1.0 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Not assoc w R | |||||
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 1.0 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.8 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrl | 1474663 | n.1006C>T | non_coding_transcript_exon_variant | 1.0 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1474672 | n.1015C>T | non_coding_transcript_exon_variant | 1.0 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1475788 | n.2131C>G | non_coding_transcript_exon_variant | 1.0 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1476368 | n.2711T>C | non_coding_transcript_exon_variant | 1.0 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 1.0 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 1.0 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 1.0 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 1.0 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 1.0 | capreomycin | Uncertain significance |
linezolid | ||||||
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 1.0 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 1.0 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 1.0 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 1.0 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 1.0 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 1.0 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476586 | n.2929C>T | non_coding_transcript_exon_variant | 1.0 | capreomycin | |
linezolid | ||||||
rpsA | 1833676 | c.135A>G | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1833679 | c.138G>C | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1833694 | c.153G>C | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1833697 | c.156C>G | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1833709 | c.168C>G | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1833721 | c.180A>G | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1833724 | c.183C>T | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1833727 | c.186G>C | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1833730 | c.189C>T | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1833734 | p.Ala65Ser | missense_variant | 1.0 | pyrazinamide | |
rpsA | 1833745 | c.204G>C | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1833979 | c.438T>C | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1833988 | c.447C>G | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1833994 | c.453G>C | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834000 | c.459G>C | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834009 | c.468C>T | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834021 | c.480C>T | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834030 | c.489C>G | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834033 | c.492C>T | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834034 | p.Ile165Val | missense_variant | 1.0 | pyrazinamide | |
rpsA | 1834395 | p.Arg285Gln | missense_variant | 1.0 | pyrazinamide | |
rpsA | 1834411 | c.870T>C | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834417 | c.876G>C | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834423 | c.882G>T | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834427 | p.Ile296Val | missense_variant | 1.0 | pyrazinamide | Uncertain significance |
rpsA | 1834451 | c.910T>C | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834456 | c.915T>G | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834468 | c.927A>G | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834474 | c.933C>G | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834483 | c.942G>A | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834486 | p.Glu315Asp | missense_variant | 1.0 | pyrazinamide | |
rpsA | 1834489 | c.948T>C | synonymous_variant | 1.0 | pyrazinamide | |
rpsA | 1834517 | c.976C>T | synonymous_variant | 1.0 | pyrazinamide | |
rpoA | 3878298 | c.210A>G | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoA | 3878310 | c.196_198delGTGinsAC | frameshift_variant&missense_variant | 1.0 | rifampicin | |
rpoA | 3878318 | p.Thr64Ser | missense_variant | 1.0 | rifampicin | |
rpoA | 3878322 | c.186A>G | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoA | 3878329 | p.Leu60Gln | missense_variant | 1.0 | rifampicin | |
rpoA | 3878331 | c.177A>G | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoA | 3878342 | p.Ile56Val | missense_variant | 1.0 | rifampicin | |
rpoA | 3878346 | c.160_162delATTinsCG | frameshift_variant&missense_variant | 1.0 | rifampicin | |
rpoA | 3878358 | c.150C>G | synonymous_variant | 1.0 | rifampicin | |
rpoA | 3878364 | c.144A>C | synonymous_variant | 1.0 | rifampicin | |
rpoA | 3878367 | c.141C>G | synonymous_variant | 1.0 | rifampicin | |
rpoA | 3878370 | c.138T>C | synonymous_variant | 1.0 | rifampicin | |
rpoA | 3878373 | c.135G>C | synonymous_variant | 1.0 | rifampicin | |
rpoA | 3878397 | c.111G>C | synonymous_variant | 1.0 | rifampicin | |
rpoA | 3878400 | c.108T>C | synonymous_variant | 1.0 | rifampicin | Not assoc w R - Interim |
rpoA | 3878406 | c.102G>C | synonymous_variant | 1.0 | rifampicin | |
rpoA | 3878409 | c.99C>G | synonymous_variant | 1.0 | rifampicin | |
rpoA | 3878421 | c.87A>T | synonymous_variant | 1.0 | rifampicin | |
rpoA | 3878424 | c.84G>C | synonymous_variant | 1.0 | rifampicin | |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4039524 | p.Phe394His | missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4039552 | p.Leu385Met | missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4039554 | p.Thr384Asn | missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4039556 | p.Ala383Val | missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4039559 | c.1146C>G | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4039562 | p.Ala381Gly | missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4039570 | p.Met379Leu | missense_variant | 1.0 | pyrazinamide | Uncertain significance |
clpC1 | 4039574 | c.1131G>C | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4039588 | p.Ser373Thr | missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4039601 | c.1104G>C | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4039604 | c.1101G>A | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4039616 | c.1089G>T | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4039622 | c.1083C>T | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4039628 | c.1077C>G | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4039642 | p.Thr355Ala | missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4039647 | p.Glu353Pro | missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4039649 | c.1054_1056delGTGinsAC | frameshift_variant&missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4039652 | c.1053G>C | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4039661 | p.Gly348Gln | missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4039670 | c.1033_1035delGTGinsAC | frameshift_variant&missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4039682 | c.1023C>G | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4039817 | c.888A>T | synonymous_variant | 0.8 | pyrazinamide | |
clpC1 | 4039820 | c.885T>G | synonymous_variant | 0.8 | pyrazinamide | |
clpC1 | 4039838 | c.865_867delCTGinsAC | frameshift_variant&missense_variant | 0.8 | pyrazinamide | |
clpC1 | 4039850 | c.855T>C | synonymous_variant | 0.85 | pyrazinamide | |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4039875 | p.Asn277Arg | missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4039889 | c.816G>C | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4039967 | p.Gln246His | missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 0.93 | pyrazinamide | |
clpC1 | 4039994 | p.Glu237Asp | missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4039997 | c.708C>T | synonymous_variant | 1.0 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040001 | p.His235Arg | missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4040010 | p.Ala232Asp | missense_variant | 0.92 | pyrazinamide | Uncertain significance |
clpC1 | 4040013 | p.Gln231Ala | missense_variant | 1.0 | pyrazinamide | |
clpC1 | 4040015 | c.690G>T | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4040018 | c.687G>A | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4040027 | c.678C>G | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4040042 | c.663C>T | synonymous_variant | 1.0 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040057 | c.648C>T | synonymous_variant | 1.0 | pyrazinamide | |
clpC1 | 4040066 | c.639G>C | synonymous_variant | 1.0 | pyrazinamide |