Rv0682 - c.273T>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
69 Sensitive
12 RR-TB
54 HR-TB
18 MDR-TB
8 Pre-XDR-TB
0 XDR-TB
73 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 115 |
| La1;lineage4.9 | 1 |
| lineage2.2.1 | 14 |
| lineage4.1.2.1 | 5 |
| lineage2.2.1.2 | 3 |
| La3;lineage4 | 1 |
| lineage4.6.5 | 2 |
| La3;lineage4.9 | 9 |
| lineage4.8 | 3 |
| La2;lineage4.9 | 2 |
| lineage4.3.2.1 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage3 | 8 |
| lineage4 | 4 |
| La1.8.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| 5 | |
| lineage1.1.3.1 | 1 |
| La1.2 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage1.1.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage1.2.1.1 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage3.1.3 | 2 |
| lineage3.1.2.2 | 1 |
| lineage4.9;lineage9 | 3 |
| lineage6.1.1 | 2 |
| lineage1.2.2.2 | 1 |
| lineage4.8.1 | 1 |
| lineage4.9;lineage7 | 2 |
| lineage2;lineage4 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.3.4 | 2 |
| La2;lineage2.2 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.4.2 | 1 |
| lineage2.2.2 | 1 |
| lineage4.6.1 | 1 |
| lineage4.5 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| La1.4 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage2.2 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.9.1 | 1 |
| La1.7;lineage4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 234 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR181824 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782054 | Other | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR1173515 | Sensitive | lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4798504 | RR-TB | lineage3 | None | SRR7496471 | Sensitive | lineage4 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR1181349 | Sensitive | lineage4 | None | SRR7535086 | Other | None | SRR20970016 | Other | lineage2.2.1 | None | SRR29096873 | Sensitive | lineage4.9 | None | SRR12420587 | MDR-TB | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR1180446 | Other | lineage4.9 | None | SRR7851312 | Other | La1.2 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR29096935 | Sensitive | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR1049672 | Other | lineage3 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046492 | Other | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4769427 | Other | La1.2 | None | SRR8692887 | Other | None | ERR4816852 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR17832802 | HR-TB | lineage3 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR987722 | MDR-TB | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1180345 | Other | lineage4.9 | None | ERR4821143 | Other | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4821811 | Sensitive | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR752229 | Other | lineage4.5 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR1196545 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4819546 | HR-TB | lineage3 | None | SRR29096150 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None |
|---|
