Rv0668 - c.1233C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
88 Sensitive
23 RR-TB
27 HR-TB
27 MDR-TB
16 Pre-XDR-TB
0 XDR-TB
83 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.8.1 | 3 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4.9 | 112 |
| lineage4.1.2.1 | 6 |
| lineage2.2.1 | 24 |
| lineage4.3.2.1 | 5 |
| lineage4.8 | 7 |
| lineage4.1.2 | 3 |
| La1.7;lineage4.9 | 2 |
| lineage4.7 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.6 | 1 |
| lineage4.3.3;lineage4.8 | 3 |
| lineage2.2.2 | 4 |
| lineage4.3.3 | 5 |
| lineage4 | 5 |
| lineage4.1.1.3 | 3 |
| lineage3;lineage4 | 1 |
| lineage1.1.2 | 1 |
| lineage3.1.2.1 | 2 |
| La3;lineage4.9 | 8 |
| lineage5 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.3.4.1 | 1 |
| lineage1.2.1.1 | 1 |
| La1.3 | 1 |
| lineage1.1;lineage4.1.3 | 1 |
| lineage4.3.1 | 1 |
| lineage3 | 7 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.1 | 6 |
| lineage4.4.1.1.1 | 3 |
| lineage4.1.3 | 1 |
| lineage4.8.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La2 | 1 |
| lineage4.6.2.2 | 1 |
| La1.7.1 | 2 |
| lineage3.1.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage3;lineage4.9 | 1 |
| La1.2.BCG | 2 |
| lineage2.1 | 1 |
| 1 | |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.9;lineage7 | 1 |
| La1;lineage4.9 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| lineage4.3;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.1.1.3.1 | 1 |
| lineage3.1.3;lineage4.9 | 1 |
| La1.2 | 1 |
| lineage4.6.1.2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.2.1 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.3.4.2 | 2 |
| lineage6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 264 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3468488 | Other | La1.8.1 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR4814748 | Other | lineage4.8 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR29017081 | Sensitive | lineage4.9 | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR4820151 | Other | lineage4.8 | None | SRR6044936 | Other | lineage4.6 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR369158 | Other | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR4819305 | Sensitive | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | SRR6045957 | Other | lineage4.9 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | SRR7069800 | Other | lineage3.1.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR192070 | Sensitive | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR4816967 | Other | lineage5 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR867554 | Other | lineage4.3.4.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4769436 | Other | La1.3 | None | ERR4820817 | Other | lineage4.1.2.1 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4816100 | Sensitive | lineage1.1;lineage4.1.3 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR4829333 | Other | lineage4 | None | ERR2513259 | Other | lineage3 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR349299 | Other | lineage4.9 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR926163 | Other | lineage4.9 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR11342686 | MDR-TB | lineage4.8 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR13888750 | Other | La2 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR5311077 | Other | La1.8.1 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR21469202 | Other | La1.7.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR9971372 | MDR-TB | lineage4.1.1.1 | None | ERR1023509 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9971026 | Sensitive | lineage4.4.1.1.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR363447 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR4820833 | Other | lineage3;lineage4.9 | None | SRR1915485 | Other | La1.2.BCG | None | ERR3797060 | Other | La1.8.1 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4821572 | Sensitive | lineage2.1 | None | ERR867573 | Other | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | SRR12708419 | Other | lineage4.3.3 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4817060 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR4821007 | Other | lineage1.2.2.2 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR5007170 | Other | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | ERR4821747 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | ERR4821214 | Other | lineage1.2.1.2.1 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4821176 | Other | lineage2.2.1 | None | ERR4819357 | Sensitive | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | ERR4821143 | Other | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR369151 | Other | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR4821408 | Sensitive | lineage4.1.2 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR2512986 | Other | lineage3 | None | ERR6865502 | Sensitive | lineage4 | None | ERR4817131 | Other | lineage3.1.3;lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4816852 | Other | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR4819528 | RR-TB | lineage3 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4820019 | Other | lineage4.3.4.2.1 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR4816470 | HR-TB | lineage3 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR16157123 | Other | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR3797085 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR4818065 | Other | lineage4.1.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR4819772 | Other | lineage1.1.3.1 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR9787336 | RR-TB | lineage6 | None | SRR11342643 | MDR-TB | lineage4.1.1.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR971389 | Sensitive | lineage4.9 | None |
|---|
