TB-Profiler result

Run: SRR5007204
Summary

Run ID: SRR5007204

Sample name:

Date: 04-04-2023 07:53:04

Number of reads: 1277864

Percentage reads mapped: 30.79

Strain: lineage4.1.2.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 0.99
lineage4.1.2 Euro-American T;H None 0.97
lineage4.1.2.1 Euro-American (Haarlem) T1;H1 RD182 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.81 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.69 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.64 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8182 p.Gly294Asp missense_variant 0.14
gyrA 8733 c.1434_1436delCGT disruptive_inframe_deletion 0.17
gyrA 8878 p.Ala526Asp missense_variant 0.14
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 490751 c.-32T>G upstream_gene_variant 0.35
fgd1 491014 p.Thr78Pro missense_variant 0.3
fgd1 491591 p.Lys270Met missense_variant 1.0
mshA 575186 c.-162_-161insG upstream_gene_variant 0.18
mshA 575679 p.Asn111Ser missense_variant 1.0
mshA 576008 p.Ala221Ser missense_variant 0.12
mshA 576625 c.1278C>T synonymous_variant 0.4
rpoB 759615 c.-192A>C upstream_gene_variant 0.27
rpoB 759620 c.-187A>C upstream_gene_variant 0.25
rpoB 760115 c.309C>T synonymous_variant 1.0
rpoC 764593 c.1224C>T synonymous_variant 0.29
rpoC 764602 c.1233C>T synonymous_variant 0.29
rpoC 764605 c.1236G>T synonymous_variant 0.29
rpoC 764611 c.1242G>T synonymous_variant 0.29
rpoC 764626 c.1257C>T synonymous_variant 0.31
rpoC 764635 c.1266C>T synonymous_variant 0.27
rpoC 764647 c.1278C>T synonymous_variant 0.26
rpoC 764650 c.1281G>T synonymous_variant 0.25
rpoC 764653 c.1284G>C synonymous_variant 0.26
rpoC 764656 c.1287C>G synonymous_variant 0.26
rpoC 764659 c.1290C>T synonymous_variant 0.26
rpoC 764665 c.1296C>T synonymous_variant 0.27
rpoC 764668 c.1299C>T synonymous_variant 0.28
rpoC 764671 c.1302G>T synonymous_variant 0.28
rpoC 764677 c.1308C>G synonymous_variant 0.27
rpoC 764678 p.Lys437Gln missense_variant 0.27
rpoC 764681 p.Leu438Met missense_variant 0.26
rpoC 764692 c.1323C>T synonymous_variant 0.26
rpoC 764706 p.Leu446Gln missense_variant 0.28
rpoC 764731 c.1362G>C synonymous_variant 0.29
rpoC 764737 c.1368G>T synonymous_variant 0.32
rpoC 765150 p.Gly594Glu missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781760 c.201T>C synonymous_variant 0.13
rpsL 781766 c.207C>T synonymous_variant 0.14
rpsL 781772 c.213C>T synonymous_variant 0.15
rpsL 781796 p.Met79Ile missense_variant 0.13
rpsL 781802 c.243G>C synonymous_variant 0.13
rpsL 781805 c.246G>T synonymous_variant 0.13
rpsL 781811 c.252C>T synonymous_variant 0.14
rpsL 781814 c.255C>T synonymous_variant 0.14
rpsL 781817 c.258G>T synonymous_variant 0.13
rplC 800851 c.44delA frameshift_variant 0.15
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.21
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.32
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.32
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.36
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.57
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.12
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.48
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.48
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.16
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.15
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.24
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.23
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.14
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.11
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.18
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.53
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.54
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.58
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.84
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.84
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.95
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.86
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.86
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.88
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.85
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.78
rrs 1472674 n.829T>G non_coding_transcript_exon_variant 0.72
rrs 1472675 n.830T>A non_coding_transcript_exon_variant 0.71
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.69
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.75
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.72
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.54
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.29
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.15
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.15
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.15
rrs 1472849 n.1005delT non_coding_transcript_exon_variant 0.13
rrs 1472861 n.1016G>T non_coding_transcript_exon_variant 0.18
rrs 1472870 n.1025T>G non_coding_transcript_exon_variant 0.18
rrs 1472878 n.1033G>A non_coding_transcript_exon_variant 0.18
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.33
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.83
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.93
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.93
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.93
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.93
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.92
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.91
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.9
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.9
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.91
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.88
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.89
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.88
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.83
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.8
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.8
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.79
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.79
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.77
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.77
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.74
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.8
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.83
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.8
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.81
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.82
rrs 1473270 n.1425G>A non_coding_transcript_exon_variant 0.67
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.78
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.77
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.67
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.76
rrs 1473327 n.1482A>G non_coding_transcript_exon_variant 0.11
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.15
rrl 1473679 n.22T>C non_coding_transcript_exon_variant 0.12
rrl 1473697 n.40C>T non_coding_transcript_exon_variant 0.14
rrl 1473698 n.41G>A non_coding_transcript_exon_variant 0.14
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.14
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.14
rrl 1474124 n.467G>C non_coding_transcript_exon_variant 0.38
rrl 1474125 n.468C>G non_coding_transcript_exon_variant 0.38
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.46
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.5
rrl 1474141 n.484G>C non_coding_transcript_exon_variant 0.46
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 0.46
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.5
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.5
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.5
rrl 1474171 n.514C>T non_coding_transcript_exon_variant 0.5
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.54
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.54
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.54
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.56
rrl 1474199 n.542G>A non_coding_transcript_exon_variant 0.53
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 0.59
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.63
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.48
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.45
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.4
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.4
rrl 1474284 n.631_633delCCT non_coding_transcript_exon_variant 0.42
rrl 1474293 n.637_651delCCTCTCCGGAGGAGG non_coding_transcript_exon_variant 0.4
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.35
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 0.4
rrl 1474317 n.660G>A non_coding_transcript_exon_variant 0.4
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.5
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.5
rrl 1474353 n.696A>T non_coding_transcript_exon_variant 0.5
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.5
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.52
rrl 1474383 n.726G>T non_coding_transcript_exon_variant 0.43
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.27
rrl 1474476 n.819C>T non_coding_transcript_exon_variant 0.83
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.9
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.88
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.85
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.85
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.87
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.88
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.87
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.85
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.88
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.84
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.83
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.89
rrl 1474584 n.927C>T non_coding_transcript_exon_variant 0.88
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.8
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.78
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.76
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.76
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.76
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.76
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.68
rrl 1474674 n.1017A>C non_coding_transcript_exon_variant 0.71
rrl 1474675 n.1018C>A non_coding_transcript_exon_variant 0.7
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.68
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.69
rrl 1474694 n.1037C>T non_coding_transcript_exon_variant 0.67
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.54
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 0.54
rrl 1474723 n.1066G>A non_coding_transcript_exon_variant 0.57
rrl 1474734 n.1077G>A non_coding_transcript_exon_variant 0.64
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.54
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.55
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.45
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.61
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.56
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.66
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.66
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.52
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.79
rrl 1474798 n.1141C>T non_coding_transcript_exon_variant 0.12
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.78
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.67
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.67
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.73
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.7
rrl 1474883 n.1226T>C non_coding_transcript_exon_variant 0.59
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.76
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.54
rrl 1475075 n.1418A>C non_coding_transcript_exon_variant 0.29
rrl 1475137 n.1480A>G non_coding_transcript_exon_variant 0.2
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 0.23
rrl 1475515 n.1858G>A non_coding_transcript_exon_variant 0.25
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.2
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.2
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.2
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.2
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.22
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 0.22
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 0.22
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.39
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.44
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.69
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.79
rrl 1475751 n.2094C>T non_coding_transcript_exon_variant 0.87
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.87
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.87
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.87
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.85
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 0.75
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.76
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.91
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.15
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.14
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.13
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.92
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.92
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.93
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.92
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.91
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.86
rrl 1475963 n.2306G>T non_coding_transcript_exon_variant 0.73
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.84
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.83
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.79
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.68
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.79
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 0.72
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.78
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.76
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.76
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.59
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.44
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.44
rrl 1476040 n.2383C>T non_coding_transcript_exon_variant 0.44
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.44
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.42
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.5
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.12
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.23
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.5
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.55
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.12
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.13
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.62
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.66
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.65
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.62
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.7
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.7
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.68
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.15
rrl 1476229 n.2572C>G non_coding_transcript_exon_variant 0.16
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.67
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.18
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.66
rrl 1476253 n.2596A>G non_coding_transcript_exon_variant 0.66
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.6
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.85
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.22
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.62
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.22
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.76
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.82
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.82
rrl 1476297 n.2640C>A non_coding_transcript_exon_variant 0.79
rrl 1476299 n.2642C>G non_coding_transcript_exon_variant 0.52
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.57
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.82
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.22
rrl 1476308 n.2651G>C non_coding_transcript_exon_variant 0.55
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.85
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.78
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.2
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.21
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.66
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.22
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.21
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.22
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.65
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.21
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.21
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.65
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.21
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.21
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.17
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 0.2
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.81
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.81
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.81
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.8
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.8
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.15
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.56
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.18
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.58
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.67
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.57
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.57
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.59
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.21
rrl 1476573 n.2916A>C non_coding_transcript_exon_variant 0.11
rrl 1476577 n.2920T>G non_coding_transcript_exon_variant 0.11
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.23
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.33
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.21
rrl 1476586 n.2929C>T non_coding_transcript_exon_variant 0.17
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.24
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.22
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.17
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.17
rrl 1476613 n.2956G>A non_coding_transcript_exon_variant 0.17
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.17
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.17
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.17
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.17
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.17
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.17
rpsA 1833940 c.399C>T synonymous_variant 0.25
rpsA 1833955 c.414G>T synonymous_variant 0.55
rpsA 1833970 c.429G>T synonymous_variant 0.5
rpsA 1833976 c.435C>T synonymous_variant 0.46
rpsA 1833979 c.438T>C synonymous_variant 0.44
rpsA 1833991 c.450C>A synonymous_variant 0.43
rpsA 1833994 c.453G>C synonymous_variant 0.43
rpsA 1833997 c.456G>C synonymous_variant 0.42
rpsA 1834000 c.459G>T synonymous_variant 0.44
rpsA 1834012 c.471G>C synonymous_variant 0.44
rpsA 1834015 c.474G>C synonymous_variant 0.48
rpsA 1834023 c.482_483insC frameshift_variant 0.47
rpsA 1834026 c.486delG frameshift_variant 0.48
rpsA 1834030 c.489C>T synonymous_variant 0.43
rpsA 1834039 c.498C>T synonymous_variant 0.44
rpsA 1834040 p.Lys167Gln missense_variant 0.44
rpsA 1834043 p.Glu168Gln missense_variant 0.44
rpsA 1834051 c.510G>A synonymous_variant 0.46
rpsA 1834054 c.513C>T synonymous_variant 0.46
rpsA 1834090 c.549G>T synonymous_variant 0.32
rpsA 1834093 c.552G>T synonymous_variant 0.27
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102506 c.537C>T synonymous_variant 1.0
katG 2154417 c.1695G>T synonymous_variant 0.13
katG 2155758 c.354C>T synonymous_variant 0.18
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518076 c.-39C>T upstream_gene_variant 1.0
eis 2714679 c.654G>A synonymous_variant 0.14
ahpC 2726269 p.Val26Gly missense_variant 0.33
ribD 2986750 c.-89G>A upstream_gene_variant 0.25
ribD 2987293 c.456delG frameshift_variant 0.11
Rv2752c 3064553 p.Arg547Cys missense_variant 0.18
thyX 3068062 c.-117A>G upstream_gene_variant 0.29
thyA 3074648 c.-177T>G upstream_gene_variant 0.44
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3449549 p.Asn349Ile missense_variant 0.17
fprA 3473981 c.-26G>T upstream_gene_variant 0.29
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fbiA 3640787 p.Arg82His missense_variant 0.17
fbiA 3640861 p.Arg107Cys missense_variant 0.13
fbiB 3641609 c.77delG frameshift_variant 0.12
rpoA 3878044 p.Ser155Leu missense_variant 0.13
clpC1 4039670 p.Val345Ile missense_variant 0.2
clpC1 4039694 c.1011G>C synonymous_variant 0.15
clpC1 4039709 c.996C>T synonymous_variant 0.13
clpC1 4039714 p.Tyr331His missense_variant 0.14
clpC1 4039724 c.981A>G synonymous_variant 0.17
clpC1 4039733 c.972G>C synonymous_variant 0.17
clpC1 4039748 c.957G>C synonymous_variant 0.11
clpC1 4039787 c.918G>C synonymous_variant 0.11
clpC1 4039840 p.Leu289Met missense_variant 0.17
clpC1 4039847 c.858C>T synonymous_variant 0.2
clpC1 4039850 c.855T>C synonymous_variant 0.21
clpC1 4039865 c.840T>C synonymous_variant 0.39
clpC1 4039873 p.Thr278Ser missense_variant 0.43
clpC1 4039875 p.Asn277Arg missense_variant 0.39
clpC1 4039877 c.828C>T synonymous_variant 0.26
clpC1 4039880 c.825G>A synonymous_variant 0.12
clpC1 4039886 c.819C>G synonymous_variant 0.48
clpC1 4039889 c.816G>C synonymous_variant 0.5
clpC1 4039898 c.807C>G synonymous_variant 0.52
clpC1 4039904 c.801A>G synonymous_variant 0.53
clpC1 4039907 c.798G>A synonymous_variant 0.52
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.49
clpC1 4039934 c.771G>A synonymous_variant 0.45
clpC1 4039937 c.768G>T synonymous_variant 0.38
clpC1 4039943 c.762G>C synonymous_variant 0.46
clpC1 4039946 c.759A>C synonymous_variant 0.45
clpC1 4039952 c.753T>C synonymous_variant 0.44
clpC1 4039958 c.747G>C synonymous_variant 0.44
clpC1 4039964 c.741C>G synonymous_variant 0.4
clpC1 4039967 p.Gln246His missense_variant 0.4
clpC1 4039982 c.723G>C synonymous_variant 0.47
clpC1 4039988 c.717C>T synonymous_variant 0.29
clpC1 4039991 c.714G>C synonymous_variant 0.41
clpC1 4039994 p.Glu237Asp missense_variant 0.42
clpC1 4039997 c.708C>T synonymous_variant 0.45
clpC1 4040009 c.696C>T synonymous_variant 0.31
clpC1 4040015 c.690G>A synonymous_variant 0.32
clpC1 4040021 c.684A>C synonymous_variant 0.32
clpC1 4040024 c.681A>G synonymous_variant 0.32
clpC1 4040027 c.678C>G synonymous_variant 0.3
clpC1 4040033 c.672G>C synonymous_variant 0.31
clpC1 4040042 c.663C>T synonymous_variant 0.3
clpC1 4040048 c.657C>T synonymous_variant 0.12
clpC1 4040057 c.648C>T synonymous_variant 0.16
clpC1 4040069 c.636G>C synonymous_variant 0.11
clpC1 4040269 p.Gln146Glu missense_variant 0.13
clpC1 4040440 c.264delC frameshift_variant 0.15
clpC1 4040902 c.-198T>C upstream_gene_variant 0.11
embC 4240882 c.1020C>T synonymous_variant 0.18
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
embA 4245155 c.1928_1931delGCCA frameshift_variant 0.11
embA 4245786 p.Ala852Thr missense_variant 1.0
embB 4249246 c.2735_2736delCC frameshift_variant 0.15
embB 4249441 c.2928A>G synonymous_variant 0.2
aftB 4267238 p.Phe533Leu missense_variant 0.25
aftB 4268290 p.Val183Leu missense_variant 0.12
aftB 4268918 c.-82G>T upstream_gene_variant 0.14
ethA 4326453 p.Ala341Thr missense_variant 0.13
ethR 4326997 c.-552C>T upstream_gene_variant 0.2
whiB6 4338352 p.Pro57Gln missense_variant 0.22
whiB6 4338415 c.105_106delGC frameshift_variant 0.13
whiB6 4338551 c.-30G>T upstream_gene_variant 0.17
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408455 c.-253T>C upstream_gene_variant 0.1