Rv0668 - c.1287C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
21 Sensitive
7 RR-TB
22 HR-TB
11 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
35 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.1 | 2 |
| lineage4.9 | 30 |
| lineage4.4.1.1 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4 | 1 |
| lineage4.5 | 1 |
| lineage3 | 3 |
| lineage2.2.2 | 1 |
| lineage2.2.1 | 13 |
| La1.4 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.8.1 | 4 |
| lineage4.9;lineage7 | 4 |
| lineage4.1.1.3.1 | 1 |
| La1.7;lineage4.9 | 2 |
| 2 | |
| lineage4.9;lineage6.1.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.6.1.1 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.3.4.2 | 2 |
| lineage4.8.1 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage1.1.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage2.1;lineage4.9 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.3 | 1 |
| lineage4.1.3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.8 | 2 |
| lineage4.1.2.1 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;lineage4.9 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.3.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 99 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4821811 | Sensitive | lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4829333 | Other | lineage4 | None | ERR752229 | Other | lineage4.5 | None | SRR1184308 | Sensitive | lineage4.9 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR3675280 | RR-TB | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR9896144 | Other | lineage3 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR16278274 | Other | La1.4 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR7240033 | Other | La1.8.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR6046253 | Sensitive | lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR4817069 | RR-TB | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR6046492 | Other | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR400443 | Sensitive | lineage1.2.1.2.1 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | SRR7236330 | Other | La1.8.1 | None | ERR4817584 | Other | lineage3;lineage4.9 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR1140724 | Other | lineage2.2.1 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR387051 | Other | lineage4.9 | None | ERR4820266 | Sensitive | lineage3 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR4797141 | Sensitive | lineage3 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR3675582 | Other | lineage4.9 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR11462861 | Other | La1.8.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR19303931 | Other | lineage2.2.1 | None | SRR19303813 | Sensitive | lineage4.8 | None | ERR5311077 | Other | La1.8.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR29017081 | Sensitive | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6044952 | Other | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR3675230 | Other | lineage3;lineage4 | None | SRR5341330 | Other | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None |
|---|
