TB-Profiler result

Run: ERR4814896
Summary

Run ID: ERR4814896

Sample name:

Date: 01-04-2023 13:33:05

Number of reads: 2207909

Percentage reads mapped: 79.17

Strain: lineage2.2.1.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 1.0
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 1.0
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.99
lineage2.2.1.1 East-Asian (Beijing) Beijing-RD150 RD105;RD207;RD181;RD150 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.38 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6808 c.-494C>T upstream_gene_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7394 c.93T>C synonymous_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575907 p.Ala187Val missense_variant 1.0
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 761037 c.1231T>C synonymous_variant 0.11
rpoB 762134 c.2328C>T synonymous_variant 0.11
rpoB 762143 c.2337T>C synonymous_variant 0.1
rpoB 762149 c.2343G>C synonymous_variant 0.11
rpoB 762158 c.2352G>C synonymous_variant 0.1
rpoB 762218 c.2412T>C synonymous_variant 0.11
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763043 c.-327G>C upstream_gene_variant 0.12
rpoC 763053 c.-317T>C upstream_gene_variant 0.2
rpoC 763070 c.-300T>C upstream_gene_variant 0.22
rpoB 763077 p.Val1091Thr missense_variant 0.22
rpoC 763103 c.-267G>C upstream_gene_variant 0.21
rpoC 763115 c.-255T>C upstream_gene_variant 0.22
rpoB 763119 p.Asn1105Asp missense_variant 0.2
rpoC 763127 c.-243G>C upstream_gene_variant 0.17
rpoC 763133 c.-237G>C upstream_gene_variant 0.15
rpoC 763675 c.306C>G synonymous_variant 0.19
rpoC 763699 c.330G>T synonymous_variant 0.36
rpoC 763708 c.339G>C synonymous_variant 0.37
rpoC 763714 c.345G>C synonymous_variant 0.36
rpoC 763717 c.348T>C synonymous_variant 0.36
rpoC 763718 p.Leu117Val missense_variant 0.34
rpoC 763723 c.354G>C synonymous_variant 0.35
rpoC 763724 p.Asp119Asn missense_variant 0.33
rpoC 763729 c.360G>C synonymous_variant 0.37
rpoC 763732 c.363C>G synonymous_variant 0.37
rpoC 763735 c.366G>C synonymous_variant 0.37
rpoC 763744 c.375G>C synonymous_variant 0.37
rpoC 763751 p.Ile128Val missense_variant 0.38
rpoC 763772 p.Val135Met missense_variant 0.33
rpoC 763781 p.Ser138Glu missense_variant 0.14
rpoC 764605 c.1236G>T synonymous_variant 0.18
rpoC 764611 c.1242G>T synonymous_variant 0.26
rpoC 764626 c.1257C>T synonymous_variant 0.22
rpoC 764632 c.1263T>C synonymous_variant 0.35
rpoC 764647 c.1278C>T synonymous_variant 0.36
rpoC 764650 c.1281G>T synonymous_variant 0.37
rpoC 764653 c.1284G>C synonymous_variant 0.37
rpoC 764656 c.1287C>G synonymous_variant 0.26
rpoC 764662 c.1293G>C synonymous_variant 0.27
rpoC 764677 c.1308C>G synonymous_variant 0.34
rpoC 764678 p.Lys437Gln missense_variant 0.37
rpoC 764701 c.1332C>G synonymous_variant 0.23
rpoC 764706 p.Leu446Gln missense_variant 0.33
rpoC 764713 c.1344G>C synonymous_variant 0.31
rpoC 764731 c.1362G>C synonymous_variant 0.13
rpoC 764737 c.1368G>C synonymous_variant 0.11
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpS5 779615 c.-710C>G upstream_gene_variant 0.98
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781760 c.201T>C synonymous_variant 0.11
rpsL 781766 c.207C>T synonymous_variant 0.11
rpsL 781796 p.Met79Ile missense_variant 0.15
rpsL 781802 c.243G>C synonymous_variant 0.14
rpsL 781811 c.252C>T synonymous_variant 0.15
rpsL 781814 c.255C>T synonymous_variant 0.15
rpsL 781817 c.258G>T synonymous_variant 0.14
rpsL 781832 c.273T>C synonymous_variant 0.17
rpsL 781835 c.276T>C synonymous_variant 0.13
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 0.44
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.64
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.68
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.93
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.38
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.91
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.91
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.91
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.93
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.92
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.92
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.56
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.7
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.88
rrs 1472274 n.429A>G non_coding_transcript_exon_variant 0.46
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 1.0
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.67
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.67
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.67
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.5
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.5
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.5
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.5
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.67
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.6
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.4
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.55
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.55
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.47
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.61
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.34
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.58
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.62
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.43
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.31
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.95
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.97
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.4
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.55
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.55
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.53
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.7
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 1.0
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.25
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.67
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.33
rrs 1472670 n.825G>T non_coding_transcript_exon_variant 0.29
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.5
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 0.5
rrs 1472677 n.832C>T non_coding_transcript_exon_variant 0.5
rrs 1472681 n.837_838delTT non_coding_transcript_exon_variant 0.5
rrs 1472687 n.842_843insC non_coding_transcript_exon_variant 0.5
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.5
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.48
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.6
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.32
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.66
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.33
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.36
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.36
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.34
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.62
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.35
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.36
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.94
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.53
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.18
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.94
rrs 1472840 n.995A>G non_coding_transcript_exon_variant 0.71
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.97
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.91
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.96
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.93
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.94
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.95
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.89
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.87
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.98
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.94
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.95
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.94
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.84
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.84
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.89
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.86
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.82
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.81
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.81
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.81
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.81
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.72
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.83
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.86
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.9
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.93
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.82
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.82
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.81
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.84
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.84
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.81
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.8
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.65
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.65
rrl 1473384 n.-274A>G upstream_gene_variant 0.23
rrl 1473745 n.88G>A non_coding_transcript_exon_variant 0.29
rrl 1474163 n.506C>T non_coding_transcript_exon_variant 0.71
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.8
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.97
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.97
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.97
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.97
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.97
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.97
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 0.62
rrl 1474272 n.615C>T non_coding_transcript_exon_variant 0.62
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.83
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.8
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.67
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 1.0
rrl 1474381 n.724T>G non_coding_transcript_exon_variant 1.0
rrl 1474383 n.726G>T non_coding_transcript_exon_variant 1.0
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.67
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.5
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.5
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.5
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.5
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.5
rrl 1474551 n.894G>A non_coding_transcript_exon_variant 0.25
rrl 1474628 n.971C>T non_coding_transcript_exon_variant 0.2
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>G non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474643 n.986A>G non_coding_transcript_exon_variant 1.0
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.75
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.75
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.75
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.75
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 0.67
rrl 1474734 n.1077G>A non_coding_transcript_exon_variant 0.67
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.67
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.67
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.67
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.67
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.67
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.5
rrl 1475499 n.1842C>T non_coding_transcript_exon_variant 1.0
rrl 1475518 n.1861A>G non_coding_transcript_exon_variant 1.0
rrl 1475521 n.1864T>C non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>T non_coding_transcript_exon_variant 1.0
rrl 1475529 n.1872A>G non_coding_transcript_exon_variant 1.0
rrl 1475532 n.1875A>T non_coding_transcript_exon_variant 1.0
rrl 1475538 n.1881T>C non_coding_transcript_exon_variant 1.0
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 1.0
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 1.0
rrl 1475715 n.2058G>T non_coding_transcript_exon_variant 1.0
rrl 1475735 n.2078T>C non_coding_transcript_exon_variant 0.5
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 1.0
rrl 1475751 n.2094C>T non_coding_transcript_exon_variant 1.0
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 1.0
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 1.0
rrl 1475762 n.2105G>C non_coding_transcript_exon_variant 0.67
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.67
rrl 1475783 n.2126T>C non_coding_transcript_exon_variant 0.15
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 1.0
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.73
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.42
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.36
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.18
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.82
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.82
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.6
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.88
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.86
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.71
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.71
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.71
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.8
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.75
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.75
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.67
rrl 1475995 n.2338G>C non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 1.0
rrl 1475998 n.2341C>G non_coding_transcript_exon_variant 1.0
rrl 1476000 n.2343G>A non_coding_transcript_exon_variant 1.0
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.8
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.29
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.5
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 1.0
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.33
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.33
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.4
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.5
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.5
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.5
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.62
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.87
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.88
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.89
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.86
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.93
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.89
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.83
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.67
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.64
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.5
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.46
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.58
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.62
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.55
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.54
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.5
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.5
rrl 1476542 n.2885T>C non_coding_transcript_exon_variant 0.5
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.61
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.46
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.42
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.55
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.5
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.5
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.5
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.5
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.46
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.43
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.43
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.43
rpsA 1833676 c.135A>G synonymous_variant 0.12
rpsA 1833679 c.138G>C synonymous_variant 0.11
rpsA 1833684 p.Arg48His missense_variant 0.11
rpsA 1833694 c.153G>C synonymous_variant 0.13
rpsA 1833721 c.180A>G synonymous_variant 0.15
rpsA 1833724 c.183C>T synonymous_variant 0.13
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834189 c.648G>C synonymous_variant 0.12
rpsA 1834195 c.654G>C synonymous_variant 0.17
rpsA 1834207 c.666C>T synonymous_variant 0.16
rpsA 1834213 c.672G>C synonymous_variant 0.16
rpsA 1834225 c.684C>T synonymous_variant 0.18
rpsA 1834234 c.693G>C synonymous_variant 0.38
rpsA 1834240 c.699T>C synonymous_variant 0.38
rpsA 1834241 c.700C>T synonymous_variant 0.21
rpsA 1834246 c.705G>T synonymous_variant 0.38
rpsA 1834249 c.708T>C synonymous_variant 0.41
rpsA 1834261 c.720A>G synonymous_variant 0.58
rpsA 1834264 c.723G>C synonymous_variant 0.57
rpsA 1834294 c.753G>C synonymous_variant 0.51
rpsA 1834298 p.Gln253Glu missense_variant 0.5
rpsA 1834306 c.765T>C synonymous_variant 0.47
rpsA 1834307 p.Asp256Gln missense_variant 0.44
rpsA 1834312 c.771G>A synonymous_variant 0.4
rpsA 1834327 c.786G>T synonymous_variant 0.39
rpsA 1834345 c.804C>T synonymous_variant 0.29
rpsA 1834348 c.807T>C synonymous_variant 0.27
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518528 c.414C>A synonymous_variant 1.0
eis 2714846 p.Val163Ile missense_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 0.95
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
embB 4248115 c.1602C>T synonymous_variant 1.0
aftB 4267647 p.Asp397Gly missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0