lineage | Count |
---|---|
lineage4.3.3 | 4 |
lineage4.6.5 | 2 |
lineage4.1.1.3 | 2 |
lineage2.2.1 | 11 |
lineage4.6.1.2 | 3 |
lineage4 | 7 |
11 | |
lineage4.3.2.1 | 2 |
lineage4.9 | 34 |
lineage3 | 14 |
lineage4.8 | 9 |
lineage1.2.2 | 1 |
lineage3.1.2 | 1 |
lineage1.1.3.1 | 1 |
lineage4.1.2.1 | 3 |
lineage4.1 | 3 |
lineage2.2.1.1 | 1 |
lineage2.2 | 1 |
lineage3.1 | 1 |
lineage3.1.2.1 | 1 |
lineage6 | 1 |
lineage1.1.1 | 1 |
lineage4.4.1.1 | 4 |
lineage1 | 1 |
lineage4.1.1 | 1 |
lineage4.8.2 | 1 |
lineage1.2.2.2 | 1 |
lineage4.3.4.1 | 3 |
lineage4.6.2.2 | 1 |
lineage3.1.1 | 1 |
lineage2.1 | 1 |
lineage4.1.3 | 1 |
lineage4.9;lineage4.2.1 | 1 |
lineage5.1.1 | 1 |
lineage4.6.1.1 | 1 |
lineage4.7 | 1 |
lineage2.2.2 | 1 |
lineage4.5;lineage2.2.1 | 1 |
spoligotype | Count |
---|---|
None | 135 |
ID | Drug resistance | Lineage | Country iso2 | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1173740 | Other | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1140736 | RR-TB | None | SRR1173170 | Other | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173310 | MDR-TB | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR1180440 | Other | lineage4.9 | None | SRR1181161 | Other | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1180446 | Other | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR16157123 | Other | lineage4.9 | None | SRR17040825 | MDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | ERR4814312 | Other | lineage4 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | ERR4815777 | Other | lineage4.9 | None | ERR4814356 | Pre-XDR-TB | lineage3.1.2 | None | ERR4814617 | Other | lineage1.1.3.1 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4815709 | Sensitive | lineage4.1.2.1 | None | ERR4815502 | Other | lineage4.1 | None | ERR4814748 | Other | lineage4.8 | None | ERR4815556 | RR-TB | lineage3 | None | ERR4814841 | Other | lineage4.1 | None | ERR4814878 | Sensitive | lineage4.8 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4816982 | Other | lineage4 | None | ERR4816944 | RR-TB | lineage2.2 | None | ERR4815909 | Other | lineage4.8 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4817069 | RR-TB | None | ERR4817131 | Pre-XDR-TB | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818787 | MDR-TB | lineage6 | None | ERR4817703 | Other | lineage1.1.1 | None | ERR4819017 | RR-TB | lineage3 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4818128 | RR-TB | lineage4.1.2.1 | None | ERR4818173 | Other | lineage2.2.1 | None | ERR4818259 | RR-TB | lineage4.1.1 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR2509886 | RR-TB | lineage3 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4818393 | RR-TB | lineage3 | None | ERR4818522 | Pre-XDR-TB | lineage3 | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4819305 | RR-TB | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4819217 | Other | lineage1.2.2.2 | None | ERR4820266 | RR-TB | lineage3 | None | ERR2513830 | RR-TB | lineage4.8 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4820324 | Other | lineage4 | None | ERR4819307 | RR-TB | lineage4 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR4820586 | Other | lineage3 | gb | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR4819765 | Other | lineage4.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR1023509 | Other | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4820833 | HR-TB | None | ERR4820030 | Other | lineage4.9 | None | ERR4820107 | RR-TB | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR4821214 | RR-TB | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | ERR4821341 | Other | lineage4.3.4.1 | None | ERR4821572 | Other | lineage2.1 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | SRR6045957 | Other | lineage4.9 | None | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4822104 | RR-TB | lineage3 | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | SRR6046839 | Other | lineage4.9 | None | SRR6153036 | Other | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR10796572 | Other | lineage4.3.4.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None |
---|