TB-Profiler result

Run: ERR4821334
Summary

Run ID: ERR4821334

Sample name:

Date: 01-04-2023 17:11:56

Number of reads: 2540797

Percentage reads mapped: 72.76

Strain: lineage4.1.3

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 1.0
lineage4.1.3 Euro-American T;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.1 rifampicin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.18 streptomycin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.59 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.17 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.15 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
rpoB 761102 c.1296A>G synonymous_variant 0.17
rpoB 761123 c.1317G>C synonymous_variant 0.1
rpoB 762062 c.2256T>C synonymous_variant 0.11
rpoB 762065 c.2259T>C synonymous_variant 0.1
rpoB 762071 p.Asp755Glu missense_variant 0.13
rpoB 762080 c.2274G>C synonymous_variant 0.15
rpoB 762085 p.Ala760Glu missense_variant 0.15
rpoB 762089 c.2283G>A synonymous_variant 0.15
rpoB 762200 c.2394C>T synonymous_variant 0.22
rpoB 762212 c.2406G>C synonymous_variant 0.11
rpoB 762233 c.2427G>C synonymous_variant 0.24
rpoB 762236 c.2430G>C synonymous_variant 0.18
rpoB 762245 c.2439G>C synonymous_variant 0.26
rpoB 762254 c.2448T>C synonymous_variant 0.16
rpoB 762879 p.Met1025Leu missense_variant 0.1
rpoC 762902 c.-468C>T upstream_gene_variant 0.17
rpoC 762911 c.-459C>T upstream_gene_variant 0.19
rpoC 762917 c.-453C>T upstream_gene_variant 0.16
rpoC 762920 c.-450C>T upstream_gene_variant 0.19
rpoC 762929 c.-441G>T upstream_gene_variant 0.16
rpoC 762944 c.-426C>T upstream_gene_variant 0.12
rpoC 762956 c.-414G>C upstream_gene_variant 0.1
rpoC 762962 c.-408C>T upstream_gene_variant 0.14
rpoC 763699 c.330G>T synonymous_variant 0.25
rpoC 763708 c.339G>C synonymous_variant 0.21
rpoC 763714 c.345G>C synonymous_variant 0.22
rpoC 763717 c.348T>C synonymous_variant 0.18
rpoC 763718 p.Leu117Val missense_variant 0.19
rpoC 763723 c.354G>C synonymous_variant 0.17
rpoC 763724 p.Asp119Asn missense_variant 0.17
rpoC 763729 c.360G>C synonymous_variant 0.17
rpoC 763732 c.363C>G synonymous_variant 0.18
rpoC 763735 c.366G>C synonymous_variant 0.17
rpoC 763744 c.375G>C synonymous_variant 0.17
rpoC 763751 p.Ile128Val missense_variant 0.23
rpoC 763772 p.Val135Met missense_variant 0.28
rpoC 763781 p.Ser138Ala missense_variant 0.11
rpoC 764485 c.1116G>C synonymous_variant 0.12
rpoC 764491 c.1122G>T synonymous_variant 0.12
rpoC 764497 c.1128A>G synonymous_variant 0.13
rpoC 764548 c.1179G>C synonymous_variant 0.1
rpoC 764626 c.1257C>T synonymous_variant 0.24
rpoC 764632 c.1263T>C synonymous_variant 0.2
rpoC 764647 c.1278C>T synonymous_variant 0.22
rpoC 764650 c.1281G>T synonymous_variant 0.22
rpoC 764653 c.1284G>C synonymous_variant 0.22
rpoC 764656 c.1287C>T synonymous_variant 0.22
rpoC 764662 c.1293G>C synonymous_variant 0.2
rpoC 764677 c.1308C>G synonymous_variant 0.23
rpoC 764678 p.Lys437Gln missense_variant 0.21
rpoC 764706 p.Leu446Gln missense_variant 0.27
rpoC 764713 c.1344G>T synonymous_variant 0.23
rpoC 765150 p.Gly594Glu missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781421 c.-139C>A upstream_gene_variant 1.0
rpsL 781766 c.207C>T synonymous_variant 0.11
rpsL 781772 c.213C>T synonymous_variant 0.14
rpsL 781796 p.Met79Ile missense_variant 0.17
rpsL 781802 c.243G>C synonymous_variant 0.16
rpsL 781805 c.246G>T synonymous_variant 0.16
rpsL 781811 c.252C>T synonymous_variant 0.18
rpsL 781814 c.255C>T synonymous_variant 0.16
rpsL 781817 c.258G>T synonymous_variant 0.17
rpsL 781829 c.270G>C synonymous_variant 0.16
rpsL 781832 c.273T>C synonymous_variant 0.16
rpsL 781838 c.279G>T synonymous_variant 0.11
fbiC 1304610 c.1680C>T synonymous_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471866 n.21C>T non_coding_transcript_exon_variant 0.12
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 0.13
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.38
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.44
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.19
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.22
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.62
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.18
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.21
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.46
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.46
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.47
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.96
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.42
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.43
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.55
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.42
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.96
rrs 1472282 n.437T>G non_coding_transcript_exon_variant 0.21
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.67
rrs 1472333 n.488G>A non_coding_transcript_exon_variant 0.67
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.8
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.44
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.44
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.4
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.36
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.29
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.33
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.43
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.71
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.67
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.67
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.76
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.81
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.78
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.78
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.78
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.79
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.63
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.6
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.4
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.98
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.75
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.75
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.11
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.63
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.21
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.83
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.75
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.33
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.5
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.33
rrs 1472670 n.825G>T non_coding_transcript_exon_variant 0.18
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.42
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.14
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.55
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.42
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.56
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.56
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.57
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.24
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.57
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.46
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.54
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.52
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.93
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.34
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.37
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.85
rrs 1472840 n.995A>G non_coding_transcript_exon_variant 0.27
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.82
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.5
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.38
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.51
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.9
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.92
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.9
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.93
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.52
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.51
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.97
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.4
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.4
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.97
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.96
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.96
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.95
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.35
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.35
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.96
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.95
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.92
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.85
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.92
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.93
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.93
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.52
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.86
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.37
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.42
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.94
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.96
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.44
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.47
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 0.13
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.14
rrs 1473199 n.1356delA non_coding_transcript_exon_variant 0.14
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.14
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.49
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.94
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.94
rrs 1473270 n.1425G>A non_coding_transcript_exon_variant 0.15
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.86
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.6
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.69
rrs 1473293 n.1449delA non_coding_transcript_exon_variant 0.61
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.61
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.64
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.81
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.21
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.91
rrl 1473384 n.-274A>G upstream_gene_variant 0.38
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.6
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.6
rrl 1474163 n.506C>T non_coding_transcript_exon_variant 0.33
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.75
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.93
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.93
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 1.0
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.93
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474275 n.618T>C non_coding_transcript_exon_variant 0.67
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.67
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.67
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.67
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.67
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.75
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.75
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.33
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 1.0
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 1.0
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 1.0
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>C non_coding_transcript_exon_variant 0.67
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.67
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.67
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 1.0
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.5
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.6
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 1.0
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.88
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 1.0
rrl 1475767 n.2110_2111insT non_coding_transcript_exon_variant 1.0
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.3
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.7
rrl 1475834 n.2177T>C non_coding_transcript_exon_variant 0.1
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.5
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.5
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.4
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.4
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.43
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.29
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.33
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.5
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.5
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.5
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.5
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.4
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.5
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.5
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.75
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.75
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.75
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.33
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.14
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.67
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.52
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.59
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.74
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.87
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.72
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.86
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.76
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.16
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.87
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.92
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.98
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.92
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.93
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.88
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.87
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.69
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.25
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.5
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.38
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.38
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.31
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.33
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.33
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.42
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.5
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.45
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.45
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.44
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.5
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.44
rpsA 1833700 c.159C>T synonymous_variant 0.12
rpsA 1833721 c.180A>G synonymous_variant 0.15
rpsA 1833724 c.183C>T synonymous_variant 0.13
rpsA 1833732 p.Pro64Leu missense_variant 0.16
rpsA 1833734 p.Ala65Ser missense_variant 0.14
rpsA 1833742 c.201A>G synonymous_variant 0.18
rpsA 1833751 c.210C>T synonymous_variant 0.15
rpsA 1834189 c.648G>T synonymous_variant 0.16
rpsA 1834195 c.654G>C synonymous_variant 0.18
rpsA 1834228 c.687C>T synonymous_variant 0.23
rpsA 1834231 c.690T>C synonymous_variant 0.16
rpsA 1834234 c.693G>C synonymous_variant 0.18
rpsA 1834240 c.699T>C synonymous_variant 0.17
rpsA 1834246 c.705G>T synonymous_variant 0.17
rpsA 1834249 c.708T>C synonymous_variant 0.18
rpsA 1834261 c.720A>G synonymous_variant 0.14
rpsA 1834264 c.723G>C synonymous_variant 0.14
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
clpC1 4039804 p.Ala301Ser missense_variant 0.2
clpC1 4039817 c.888A>T synonymous_variant 0.23
clpC1 4039820 c.885T>G synonymous_variant 0.21
clpC1 4039826 c.879C>G synonymous_variant 0.24
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.24
clpC1 4039838 p.Leu289Ile missense_variant 0.31
clpC1 4039865 c.840T>C synonymous_variant 0.38
clpC1 4039871 c.834C>G synonymous_variant 0.35
clpC1 4039875 p.Asn277Arg missense_variant 0.35
clpC1 4039889 c.816G>T synonymous_variant 0.28
clpC1 4039898 c.807C>G synonymous_variant 0.2
clpC1 4039904 c.801A>G synonymous_variant 0.11
clpC1 4039916 c.789T>C synonymous_variant 0.11
clpC1 4039994 p.Glu237Asp missense_variant 0.12
clpC1 4040009 c.696C>G synonymous_variant 0.12
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
aftB 4268683 p.Gly52Ser missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0