Rv0682 - c.213C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
75 Sensitive
6 RR-TB
42 HR-TB
14 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
67 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3;lineage4.9 | 1 |
| La1.6;lineage4 | 1 |
| lineage4.9 | 101 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| La1.8.1 | 3 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4.3.4.2.1 | 2 |
| 3 | |
| lineage2.2.1;lineage4 | 1 |
| lineage4.6.5 | 2 |
| lineage2.2.1 | 25 |
| lineage4.8 | 3 |
| lineage4.4.1.2 | 1 |
| lineage5.2 | 4 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1;lineage4.9 | 2 |
| La1.7;lineage4.9 | 3 |
| M.canetti;lineage4.9 | 1 |
| lineage2.2.1.2 | 1 |
| lineage3 | 1 |
| lineage4.3.2.1 | 3 |
| lineage4.1.2 | 2 |
| lineage4.3.3 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage1.1.2 | 3 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.7 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.4.2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage5 | 1 |
| lineage4.1.3 | 1 |
| lineage4 | 4 |
| lineage4.3 | 1 |
| lineage4.2.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage3.1.1 | 1 |
| lineage5.1.4 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.4 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.5 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.1.1.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 208 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR6046878 | Other | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR4798823 | HR-TB | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR6046046 | Other | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR15722983 | MDR-TB | lineage2.2.1 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6045347 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4872093 | MDR-TB | lineage5.2 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR9119499 | MDR-TB | lineage5.2 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR10315466 | RR-TB | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR6359082 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR29772381 | HR-TB | lineage1.1.2 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR4796254 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR1063896 | Sensitive | None | SRR5535933 | Other | lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4816967 | Other | lineage5 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR4821334 | Other | lineage4.1.3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR7496471 | Sensitive | lineage4 | None | ERR400326 | Other | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR11462861 | Other | La1.8.1 | None | ERR3283032 | Other | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR6866639 | Other | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR26159066 | Sensitive | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | ERR4821288 | Other | lineage4.7 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR2815596 | Other | La1.4 | None | SRR12634574 | Sensitive | lineage4.6.1.1 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3675270 | Other | lineage4.9 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR3675522 | Other | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR6046593 | Other | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | SRR15723296 | HR-TB | lineage2.2.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4769450 | Other | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR6797868 | Sensitive | lineage1.2.2.2 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | SRR29096291 | Sensitive | lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR4817826 | Other | lineage4.5 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None |
|---|
