Run ID: ERR4817826
Sample name:
Date: 01-04-2023 15:12:56
Number of reads: 899797
Percentage reads mapped: 64.86
Strain: lineage4.5
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761127 | p.Ser441Ala | missense_variant | 0.17 | rifampicin |
rrs | 1472362 | n.517C>T | non_coding_transcript_exon_variant | 0.83 | streptomycin |
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.18 | streptomycin |
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.43 | streptomycin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.42 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 0.4 | kanamycin, capreomycin, aminoglycosides, amikacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6207 | p.Ala323Val | missense_variant | 0.14 |
gyrB | 6255 | p.Lys339Thr | missense_variant | 0.18 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9680 | c.2379G>A | synonymous_variant | 0.2 |
gyrA | 9788 | p.Asp829Glu | missense_variant | 1.0 |
mshA | 575398 | c.51T>C | synonymous_variant | 0.12 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.16 |
rpoB | 761123 | c.1317G>C | synonymous_variant | 0.12 |
rpoB | 761126 | c.1320G>C | synonymous_variant | 0.17 |
rpoB | 761132 | c.1326G>C | synonymous_variant | 0.15 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.15 |
rpoB | 761150 | c.1344A>T | synonymous_variant | 0.16 |
rpoB | 761159 | c.1353G>C | synonymous_variant | 0.11 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.1 |
rpoB | 761442 | p.Gly546Cys | missense_variant | 0.13 |
rpoB | 762024 | p.Val740Ile | missense_variant | 0.15 |
rpoB | 762051 | p.His749Tyr | missense_variant | 0.18 |
rpoB | 762057 | p.Ile751Val | missense_variant | 0.13 |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.13 |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.12 |
rpoB | 762080 | c.2274G>C | synonymous_variant | 0.13 |
rpoB | 762085 | p.Ala760Glu | missense_variant | 0.18 |
rpoB | 762089 | c.2283G>A | synonymous_variant | 0.17 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.15 |
rpoB | 762194 | c.2388G>C | synonymous_variant | 0.23 |
rpoB | 762200 | c.2394C>T | synonymous_variant | 0.23 |
rpoB | 762206 | c.2400C>T | synonymous_variant | 0.15 |
rpoB | 762212 | c.2406G>C | synonymous_variant | 0.13 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.16 |
rpoB | 762236 | c.2430G>C | synonymous_variant | 0.15 |
rpoB | 762245 | c.2439G>C | synonymous_variant | 0.12 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.15 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.19 |
rpoC | 762902 | c.-468C>T | upstream_gene_variant | 0.17 |
rpoC | 762911 | c.-459C>T | upstream_gene_variant | 0.18 |
rpoC | 762917 | c.-453C>T | upstream_gene_variant | 0.19 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.19 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 0.19 |
rpoC | 762944 | c.-426C>T | upstream_gene_variant | 0.19 |
rpoC | 762956 | c.-414G>C | upstream_gene_variant | 0.16 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.17 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.12 |
rpoC | 763043 | c.-327G>C | upstream_gene_variant | 0.11 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.11 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.12 |
rpoB | 763077 | p.Val1091Ser | missense_variant | 0.12 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.2 |
rpoB | 763119 | p.Asn1105Asp | missense_variant | 0.13 |
rpoC | 763127 | c.-243G>C | upstream_gene_variant | 0.14 |
rpoC | 764602 | c.1233C>T | synonymous_variant | 0.17 |
rpoC | 764605 | c.1236G>T | synonymous_variant | 0.16 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.16 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.16 |
rpoC | 764647 | c.1278C>T | synonymous_variant | 0.19 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.18 |
rpoC | 764653 | c.1284G>C | synonymous_variant | 0.18 |
rpoC | 764656 | c.1287C>T | synonymous_variant | 0.18 |
rpoC | 764659 | c.1290C>T | synonymous_variant | 0.12 |
rpoC | 764662 | c.1293G>C | synonymous_variant | 0.19 |
rpoC | 764668 | c.1299C>T | synonymous_variant | 0.14 |
rpoC | 764677 | c.1308C>A | synonymous_variant | 0.13 |
rpoC | 764678 | p.Lys437Gln | missense_variant | 0.2 |
rpoC | 764681 | p.Leu438Met | missense_variant | 0.24 |
rpoC | 764692 | c.1323C>T | synonymous_variant | 0.5 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 0.44 |
rpoC | 764731 | c.1362G>C | synonymous_variant | 0.34 |
rpoC | 764737 | c.1368G>T | synonymous_variant | 0.34 |
rpoC | 764746 | c.1377G>T | synonymous_variant | 0.33 |
rpoC | 764755 | p.Asp462Glu | missense_variant | 0.34 |
rpoC | 764758 | c.1389C>G | synonymous_variant | 0.29 |
rpoC | 764760 | p.Asn464Ser | missense_variant | 0.29 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.3 |
rpoC | 764767 | c.1398G>T | synonymous_variant | 0.29 |
rpoC | 764776 | c.1407C>T | synonymous_variant | 0.3 |
rpoC | 764861 | p.Leu498Val | missense_variant | 0.12 |
rpoC | 765044 | p.Met559Val | missense_variant | 0.1 |
rpoC | 765297 | p.Pro643Leu | missense_variant | 0.29 |
rpoC | 766521 | p.Gly1051Val | missense_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776393 | c.2088C>T | synonymous_variant | 0.15 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781751 | c.192G>C | synonymous_variant | 0.15 |
rpsL | 781754 | c.195G>A | synonymous_variant | 0.15 |
rpsL | 781766 | c.207C>T | synonymous_variant | 0.27 |
rpsL | 781772 | c.213C>T | synonymous_variant | 0.23 |
rpsL | 781796 | p.Met79Ile | missense_variant | 0.39 |
rpsL | 781802 | c.243G>C | synonymous_variant | 0.38 |
rpsL | 781805 | c.246G>T | synonymous_variant | 0.26 |
rpsL | 781811 | c.252C>T | synonymous_variant | 0.35 |
rpsL | 781814 | c.255C>T | synonymous_variant | 0.35 |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.35 |
rpsL | 781829 | c.270G>C | synonymous_variant | 0.29 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.33 |
rpsL | 781838 | c.279G>T | synonymous_variant | 0.25 |
fbiC | 1303818 | c.888C>T | synonymous_variant | 0.12 |
Rv1258c | 1406852 | c.488delT | frameshift_variant | 0.15 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471866 | n.21C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472078 | n.233C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472258 | n.413A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472274 | n.429A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472285 | n.440A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472496 | n.651T>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472597 | n.752G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472673 | n.828T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472687 | n.843dupT | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472755 | n.910G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472875 | n.1030T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472954 | n.1109T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.95 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.93 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.93 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473115 | n.1270G>T | non_coding_transcript_exon_variant | 0.66 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.87 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1473270 | n.1425G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473276 | n.1431A>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473277 | n.1432G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473293 | n.1449delA | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473300 | n.1455C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.74 |
rrs | 1473305 | n.1460G>T | non_coding_transcript_exon_variant | 0.61 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.77 |
rrl | 1474164 | n.507C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474181 | n.524C>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474185 | n.528G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1474199 | n.542G>C | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474200 | n.545delT | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474228 | n.571T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474252 | n.595T>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474275 | n.618T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474348 | n.691C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474351 | n.694G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474383 | n.726G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474406 | n.749T>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474529 | n.872A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474530 | n.873G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474539 | n.882C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474540 | n.883T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474692 | n.1035G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474734 | n.1077G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474777 | n.1120T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474783 | n.1126G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474883 | n.1226T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474932 | n.1275C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475715 | n.2058G>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475751 | n.2094C>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475756 | n.2099T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475769 | n.2112T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475945 | n.2288C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476179 | n.2522C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476204 | n.2547C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476513 | n.2856G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476524 | n.2867C>T | non_coding_transcript_exon_variant | 0.7 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.7 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.67 |
inhA | 1674862 | p.Gly221Ser | missense_variant | 0.22 |
rpsA | 1833700 | c.159C>T | synonymous_variant | 0.15 |
rpsA | 1833721 | c.180A>G | synonymous_variant | 0.12 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.17 |
rpsA | 1833732 | p.Pro64Leu | missense_variant | 0.16 |
rpsA | 1833736 | c.195C>T | synonymous_variant | 0.14 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.14 |
rpsA | 1834210 | c.669C>T | synonymous_variant | 0.15 |
rpsA | 1834213 | c.672G>A | synonymous_variant | 0.15 |
rpsA | 1834219 | c.678C>G | synonymous_variant | 0.14 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.14 |
rpsA | 1834225 | c.684C>G | synonymous_variant | 0.15 |
rpsA | 1834228 | c.687C>T | synonymous_variant | 0.15 |
rpsA | 1834231 | c.690T>C | synonymous_variant | 0.15 |
rpsA | 1834246 | c.705G>T | synonymous_variant | 0.12 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.21 |
rpsA | 1834252 | c.711C>T | synonymous_variant | 0.11 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.21 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.21 |
rpsA | 1834294 | c.753G>C | synonymous_variant | 0.11 |
rpsA | 1834298 | p.Gln253Glu | missense_variant | 0.16 |
rpsA | 1834607 | p.Arg356Cys | missense_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168145 | p.Pro823Gln | missense_variant | 0.12 |
PPE35 | 2170394 | c.219G>A | synonymous_variant | 1.0 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2221722 | c.1443C>T | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289500 | c.-260delG | upstream_gene_variant | 0.17 |
folC | 2746586 | p.Arg338Leu | missense_variant | 0.14 |
folC | 2747370 | p.Ser77Pro | missense_variant | 0.11 |
Rv3083 | 3448569 | c.66C>T | synonymous_variant | 0.14 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612577 | c.540G>A | synonymous_variant | 0.12 |
Rv3236c | 3612965 | c.151delG | frameshift_variant | 0.11 |
rpoA | 3878438 | p.Glu24Lys | missense_variant | 0.12 |
rpoA | 3878575 | c.-68C>T | upstream_gene_variant | 1.0 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 1.0 |
clpC1 | 4039607 | p.Tyr366* | stop_gained | 0.2 |
clpC1 | 4040632 | p.His25Tyr | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244703 | p.Pro491Ser | missense_variant | 0.11 |
aftB | 4267192 | p.Gly549Ser | missense_variant | 0.13 |
ethR | 4327249 | c.-300G>A | upstream_gene_variant | 0.12 |
gid | 4408372 | c.-170G>A | upstream_gene_variant | 0.14 |