Rv0682 - c.243G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
144 Sensitive
25 RR-TB
36 HR-TB
18 MDR-TB
10 Pre-XDR-TB
1 XDR-TB
80 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 177 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.1.2.1 | 9 |
| lineage4 | 8 |
| lineage2.2.1 | 20 |
| lineage4.1.1.3 | 2 |
| lineage4.3 | 1 |
| lineage4.1.1.1 | 3 |
| lineage4.3.4.2 | 1 |
| La1.7.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.8 | 9 |
| lineage3 | 10 |
| lineage4.8.1 | 1 |
| lineage3;lineage4 | 2 |
| lineage4.3.3 | 5 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.6.1.2 | 3 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.5 | 3 |
| lineage4.3.3;lineage4.8 | 2 |
| 3 | |
| lineage4.6.5 | 2 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.3.2.1 | 2 |
| lineage2.2.1.1 | 1 |
| La1.8.1 | 3 |
| lineage4.2.1 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage3.1.1 | 1 |
| lineage3;lineage4.9 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2;lineage4 | 1 |
| lineage4.3.4.2.1 | 3 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.1.3 | 1 |
| lineage2.2.2 | 1 |
| lineage1.2.2.2 | 1 |
| La1.7;lineage4.9 | 1 |
| La1.4 | 1 |
| La1.2 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage5.1.4 | 1 |
| lineage4.7 | 2 |
| lineage3.1.3 | 1 |
| lineage4.1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.4.1.1.1 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 314 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1175508 | Sensitive | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR7496471 | Sensitive | lineage4 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR3675387 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR4819546 | HR-TB | lineage3 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR473332 | Other | lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4814748 | Other | lineage4.8 | None | SRR1184329 | Other | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4817915 | Other | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR11465829 | Sensitive | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4819198 | Other | lineage2.2.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR3275450 | Other | lineage4 | None | ERR369158 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR4819305 | Sensitive | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR1049672 | Other | lineage3 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR1173515 | Sensitive | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4814896 | Other | lineage2.2.1.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR4821276 | Sensitive | lineage3 | None | SRR3675318 | Other | lineage4.9 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR2514552 | Sensitive | lineage3 | None | SRR6046802 | Other | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR1196545 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | ERR363502 | Other | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675247 | Other | lineage4.9 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR1180446 | Other | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR4817826 | Other | lineage4.5 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR4820833 | Other | lineage3;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1196478 | Other | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR4819910 | Sensitive | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | ERR349264 | Sensitive | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR6046141 | Other | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR4816322 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR3675265 | Other | lineage4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR400345 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4815909 | Other | lineage4.8 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR4821334 | Other | lineage4.1.3 | None | ERR4821331 | HR-TB | lineage4.8 | None | ERR4816470 | HR-TB | lineage3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR349299 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR9786076 | Sensitive | lineage3 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR7851312 | Other | La1.2 | None | ERR4817584 | Other | lineage3;lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR1173185 | Other | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR4821288 | Other | lineage4.7 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR1173281 | Other | lineage3 | None | ERR363446 | Sensitive | lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR7496523 | Other | lineage4.7 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR6044952 | Other | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR11465830 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1173170 | Other | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1180440 | Other | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR4817204 | Other | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4816967 | Other | lineage5 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR3797019 | Other | La1.8.1 | None | ERR502479 | RR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None |
|---|
