lineage | Count |
---|---|
lineage4.9 | 140 |
lineage4 | 83 |
24 | |
La1.8.1 | 3 |
lineage4.1.2.1 | 13 |
lineage3 | 24 |
lineage4.9;La1.3 | 3 |
lineage2.2.1 | 22 |
La1.3 | 1 |
lineage2.2.2 | 1 |
lineage4.5;lineage2.2.1 | 1 |
lineage4.5 | 3 |
lineage4.6.5 | 2 |
lineage4.1.1.3 | 3 |
lineage4.3.3 | 7 |
lineage4.8 | 13 |
lineage4.6.1.2 | 4 |
lineage4.8;lineage4.3.3 | 4 |
lineage4.3.4.2.1 | 4 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
lineage4.9;lineage2.2 | 1 |
lineage2.2 | 3 |
lineage4.4.1.1.1 | 1 |
lineage2 | 1 |
La1.4 | 1 |
lineage1.2.1.2 | 1 |
La1.7.1 | 1 |
lineage3.1.3 | 1 |
lineage1.2.2 | 1 |
lineage4.1 | 2 |
lineage1.1.2 | 2 |
lineage3.1.2 | 1 |
lineage1.1.3.1 | 1 |
lineage4.9;lineage3.1.1 | 1 |
lineage4.3.1 | 1 |
lineage2.2.1.1 | 1 |
lineage3.1.2.1 | 2 |
lineage2.1 | 1 |
lineage4.1.1 | 1 |
lineage5 | 2 |
lineage4;lineage2 | 1 |
lineage4.4.1.1 | 2 |
lineage4.2.1 | 3 |
lineage5.1.4 | 1 |
lineage4.3.4.1 | 3 |
lineage1.1.1 | 1 |
lineage3.1.1 | 1 |
lineage4.1.2 | 1 |
lineage4.7 | 3 |
lineage4.1.3 | 1 |
lineage4.3 | 1 |
La1.2 | 1 |
lineage4.8.1 | 1 |
La1.7.X-unk4 | 1 |
spoligotype | Count |
---|---|
None | 403 |
ID | Drug resistance | Lineage | Country iso2 | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797019 | Other | La1.8.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR400326 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4596902 | HR-TB | lineage3 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769446 | Sensitive | lineage4.9;La1.3 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797313 | HR-TB | None | ERR4769453 | Other | La1.3 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4796577 | MDR-TB | None | ERR4798431 | HR-TB | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR6197022 | Other | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR4812155 | Sensitive | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR6359070 | Other | lineage4.9 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049672 | Other | lineage3 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1140736 | RR-TB | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1172717 | Other | lineage4.9 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1173310 | MDR-TB | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173740 | Other | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181161 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181250 | Other | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR16156775 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR16156832 | RR-TB | None | SRR16157123 | Other | lineage4.9 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR20632814 | Sensitive | lineage4 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR4815171 | HR-TB | lineage1.1.2 | None | ERR4814312 | Other | lineage4 | None | SRR3675477 | Other | lineage4.9 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | ERR4814356 | Pre-XDR-TB | lineage3.1.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814617 | Other | lineage1.1.3.1 | None | ERR4815471 | Other | lineage4.9 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | ERR4814700 | Other | lineage4.3.3 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3675229 | Other | lineage4 | None | ERR1750921 | Sensitive | lineage4.1.1.3 | None | ERR4814748 | Other | lineage4.8 | None | ERR4814813 | Sensitive | lineage4.3.1 | gb | ERR1750943 | Sensitive | lineage4 | None | ERR4815502 | Other | lineage4.1 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR4814821 | Other | lineage2.2.1 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675283 | Sensitive | lineage4.9 | None | ERR4814896 | Other | lineage2.2.1.1 | None | SRR3675279 | Other | None | ERR4814911 | Other | lineage4.3.3 | None | SRR3675292 | Sensitive | lineage4 | None | ERR4815550 | Other | lineage4 | None | SRR3675318 | Other | lineage4.9 | None | ERR4814976 | Other | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675387 | Sensitive | None | ERR4815572 | Other | lineage4.1.2.1 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR4815909 | Other | lineage4.8 | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4816964 | Other | lineage4.9 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4816967 | RR-TB | lineage5 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR4816991 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR4816183 | Other | None | SRR3675553 | Sensitive | lineage4.9 | None | ERR4816470 | Other | lineage3 | None | ERR4816322 | Other | lineage4.9 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR4816756 | RR-TB | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817310 | Other | lineage4.9 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4816852 | Other | lineage4.9 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817826 | RR-TB | lineage4.5 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4818017 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR4819017 | RR-TB | lineage3 | None | ERR4819051 | Other | lineage4 | None | ERR4818393 | RR-TB | lineage3 | None | ERR4818355 | Other | lineage3 | None | ERR4818561 | HR-TB | lineage4 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4818536 | Other | lineage4.9 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR2513283 | Other | lineage5.1.4 | None | SRR5007165 | MDR-TB | lineage3 | None | ERR4817628 | Sensitive | lineage4.8 | gb | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR2513681 | Other | lineage1.1.2 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR4819192 | Other | lineage3 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4819305 | RR-TB | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341396 | Other | lineage4 | None | ERR4819307 | RR-TB | lineage4 | None | ERR4820324 | Other | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4820746 | RR-TB | lineage3 | None | ERR4819462 | Other | lineage4 | None | ERR4819456 | Other | lineage4.8 | None | ERR4819525 | Other | lineage3 | None | SRR5341432 | HR-TB | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | ERR4820817 | Other | lineage4.1.2.1 | None | SRR5341313 | HR-TB | None | ERR4820827 | Other | lineage4.1.2 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4819876 | HR-TB | lineage4.3.4.2.1 | None | ERR4819910 | Other | lineage4.9 | None | ERR4819933 | Other | lineage4.9 | None | ERR4821811 | RR-TB | lineage4.9 | None | SRR5341315 | Sensitive | None | ERR4820030 | Other | lineage4.9 | None | ERR4820833 | HR-TB | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4820151 | RR-TB | lineage4.8 | None | ERR2517475 | Other | lineage4 | None | SRR6045503 | HR-TB | None | ERR4821057 | HR-TB | lineage4 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821276 | Other | lineage3 | None | ERR4821214 | RR-TB | None | ERR4821310 | Other | lineage5 | None | ERR4821286 | Other | lineage4.8 | None | ERR4821288 | Other | lineage4.7 | None | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4821331 | HR-TB | lineage4.8 | None | ERR4822104 | RR-TB | lineage3 | None | ERR4821341 | Other | lineage4.3.4.1 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4821550 | Other | lineage2.2.1 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6044780 | Other | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045957 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046385 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046541 | Other | lineage4.9 | None | SRR6046617 | HR-TB | lineage2.2.1 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046815 | Other | lineage3 | None | SRR6046802 | Other | lineage4 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | SRR6046897 | Sensitive | lineage4 | None | ERR323037 | HR-TB | lineage4 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR036207 | Other | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6832644 | Other | lineage4.3.3 | None | ERR2984789 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR9971114 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7851312 | Other | La1.2 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4831638 | Sensitive | None | ERR502943 | HR-TB | None | SRR7496471 | Sensitive | None | SRR7496523 | Other | lineage4.7 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR067712 | HR-TB | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1063855 | Other | lineage4 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR349265 | Sensitive | lineage4 | None | ERR3283040 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349299 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None |
---|