TB-Profiler result

Run: ERR4820410
Summary

Run ID: ERR4820410

Sample name:

Date: 01-04-2023 16:40:02

Number of reads: 467164

Percentage reads mapped: 21.2

Strain: lineage3.1.1

Drug-resistance: Pre-XDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 1.0
lineage3.1 East-African-Indian Non-CAS1-Delhi RD750 1.0
lineage3.1.1 East-African-Indian CAS1-Kili RD750 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gyrA 7572 p.Ser91Ala missense_variant 0.5 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
rpoB 761127 p.Ser441Ala missense_variant 0.7 rifampicin
rpoB 761185 p.Glu460Gly missense_variant 0.14 rifampicin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.35 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6142 c.903G>C synonymous_variant 1.0
gyrB 6170 p.His311Thr missense_variant 0.67
gyrB 6175 c.936G>A synonymous_variant 0.67
gyrB 6183 p.Thr315Met missense_variant 0.67
gyrB 6190 c.951A>G synonymous_variant 0.67
gyrB 6204 p.Ser322Thr missense_variant 0.67
gyrB 6286 c.1047T>C synonymous_variant 0.67
gyrB 6302 p.Ala355Thr missense_variant 0.67
gyrA 6310 c.-992G>C upstream_gene_variant 0.67
gyrA 6319 c.-983G>C upstream_gene_variant 0.67
gyrB 6323 p.Val362Leu missense_variant 0.67
gyrB 6327 p.Ser363Thr missense_variant 0.67
gyrA 6362 c.-940T>C upstream_gene_variant 0.67
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7559 c.258G>C synonymous_variant 0.25
gyrA 7571 c.270G>C synonymous_variant 0.25
gyrA 7584 p.Ser95Ala missense_variant 0.44
gyrA 7589 c.288G>C synonymous_variant 0.22
gyrA 7591 p.Val97Ala missense_variant 0.44
gyrA 7596 p.Met99Leu missense_variant 0.5
gyrA 7600 p.Ala100Val missense_variant 0.4
gyrA 7606 p.Pro102Arg missense_variant 0.13
gyrA 7613 c.312G>C synonymous_variant 0.14
gyrA 7625 c.324G>C synonymous_variant 0.43
gyrA 7628 c.327G>C synonymous_variant 0.43
gyrA 7631 c.330G>C synonymous_variant 0.46
gyrA 7633 p.Asp111Ala missense_variant 0.58
gyrA 7643 c.342C>T synonymous_variant 0.23
gyrA 7653 p.Ser118Thr missense_variant 0.2
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9791 c.2490C>T synonymous_variant 0.22
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575919 p.Gly191Asp missense_variant 0.12
ccsA 620677 p.Pro263Thr missense_variant 0.14
rpoB 760318 p.Ser171Ile missense_variant 0.25
rpoB 761015 c.1209G>C synonymous_variant 0.18
rpoB 761021 c.1215G>C synonymous_variant 0.18
rpoB 761027 c.1221A>G synonymous_variant 0.18
rpoB 761030 c.1224G>C synonymous_variant 0.39
rpoB 761037 c.1231_1233delTTGinsCTC synonymous_variant 0.58
rpoB 761051 c.1245G>C synonymous_variant 0.5
rpoB 761054 c.1248G>C synonymous_variant 0.63
rpoB 761057 c.1251G>C synonymous_variant 0.55
rpoB 761058 p.Val418Thr missense_variant 0.15
rpoB 761084 c.1278C>A synonymous_variant 0.69
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.88
rpoB 761096 c.1290G>C synonymous_variant 0.85
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.69
rpoB 761102 c.1296A>G synonymous_variant 0.86
rpoB 761132 c.1326G>C synonymous_variant 0.67
rpoB 761133 c.1327T>C synonymous_variant 0.67
rpoB 761150 c.1344A>T synonymous_variant 0.53
rpoB 761159 c.1353G>C synonymous_variant 0.53
rpoB 761165 c.1359G>C synonymous_variant 0.4
rpoB 761180 c.1374A>C synonymous_variant 0.21
rpoB 761219 c.1413G>C synonymous_variant 0.25
rpoB 761234 c.1428G>C synonymous_variant 0.25
rpoB 761520 p.Tyr572Leu missense_variant 0.17
rpoB 761534 c.1728G>C synonymous_variant 0.25
rpoB 761537 c.1731C>G synonymous_variant 0.25
rpoB 761557 p.Ala584Gly missense_variant 0.27
rpoB 761562 p.Ala586Ser missense_variant 0.27
rpoB 761565 p.Met587Leu missense_variant 0.27
rpoB 761570 c.1764T>C synonymous_variant 0.27
rpoB 761579 c.1773G>C synonymous_variant 0.21
rpoB 761600 c.1794T>C synonymous_variant 0.27
rpoB 761612 c.1806G>C synonymous_variant 0.31
rpoB 761615 c.1809A>C synonymous_variant 0.18
rpoB 762024 p.Val740Ile missense_variant 0.41
rpoB 762051 p.His749Tyr missense_variant 0.56
rpoB 762057 p.Ile751Val missense_variant 0.65
rpoB 762062 c.2256T>C synonymous_variant 0.64
rpoB 762065 c.2259T>C synonymous_variant 0.64
rpoB 762071 p.Asp755Glu missense_variant 0.58
rpoB 762080 c.2274G>C synonymous_variant 0.65
rpoB 762085 p.Ala760Glu missense_variant 0.62
rpoB 762089 c.2283G>A synonymous_variant 0.62
rpoB 762092 c.2286G>A synonymous_variant 0.61
rpoB 762104 c.2298C>T synonymous_variant 0.43
rpoB 762110 c.2304G>C synonymous_variant 0.68
rpoB 762114 p.Ile770Val missense_variant 0.63
rpoB 762122 p.Asp772Glu missense_variant 0.27
rpoB 762134 c.2328C>T synonymous_variant 0.38
rpoB 762143 c.2337T>C synonymous_variant 0.44
rpoB 762149 c.2343G>C synonymous_variant 0.41
rpoB 762156 p.Val784Ile missense_variant 0.41
rpoB 762167 c.2361T>C synonymous_variant 0.21
rpoB 762176 c.2370T>C synonymous_variant 0.35
rpoB 762177 p.Arg791Thr missense_variant 0.35
rpoB 762181 p.Asp792Ala missense_variant 0.35
rpoB 762185 c.2379G>C synonymous_variant 0.41
rpoB 762194 c.2388G>C synonymous_variant 0.59
rpoB 762218 c.2412T>A synonymous_variant 0.52
rpoB 762233 c.2427G>C synonymous_variant 0.69
rpoB 762234 p.Pro810Ser missense_variant 0.59
rpoB 762239 c.2433G>A synonymous_variant 0.57
rpoB 762245 c.2439G>C synonymous_variant 0.69
rpoB 762254 c.2448T>C synonymous_variant 0.69
rpoB 762287 c.2481C>T synonymous_variant 0.16
rpoB 762293 c.2487T>C synonymous_variant 0.25
rpoC 762434 c.-936T>G upstream_gene_variant 1.0
rpoB 762879 p.Met1025Leu missense_variant 0.13
rpoC 762896 c.-474G>C upstream_gene_variant 0.13
rpoC 762902 c.-468C>T upstream_gene_variant 0.12
rpoC 762911 c.-459C>T upstream_gene_variant 0.19
rpoC 762917 c.-453C>T upstream_gene_variant 0.13
rpoC 762920 c.-450C>T upstream_gene_variant 0.14
rpoC 762926 c.-444C>G upstream_gene_variant 0.33
rpoC 762929 c.-441G>T upstream_gene_variant 0.5
rpoC 762938 c.-432G>C upstream_gene_variant 0.29
rpoC 762944 c.-426C>T upstream_gene_variant 0.2
rpoC 762956 c.-414G>T upstream_gene_variant 0.13
rpoC 762962 c.-408C>T upstream_gene_variant 0.4
rpoC 762971 c.-399G>C upstream_gene_variant 0.55
rpoC 762983 c.-387C>T upstream_gene_variant 0.43
rpoC 762989 c.-381G>C upstream_gene_variant 0.67
rpoC 762995 c.-375G>T upstream_gene_variant 0.6
rpoB 763005 p.Cys1067Val missense_variant 0.4
rpoC 763022 c.-348C>T upstream_gene_variant 0.33
rpoC 763028 c.-342T>C upstream_gene_variant 0.44
rpoC 763031 c.-339T>C upstream_gene_variant 0.92
rpoB 763038 p.Thr1078Ala missense_variant 0.65
rpoC 763043 c.-327G>C upstream_gene_variant 0.71
rpoC 763053 c.-317T>C upstream_gene_variant 0.73
rpoC 763070 c.-300T>C upstream_gene_variant 0.7
rpoB 763077 p.Val1091Thr missense_variant 0.73
rpoC 763103 c.-267G>C upstream_gene_variant 0.7
rpoC 763115 c.-255T>C upstream_gene_variant 0.68
rpoB 763119 p.Asn1105Asp missense_variant 0.68
rpoC 763127 c.-243G>C upstream_gene_variant 0.7
rpoC 763133 c.-237G>C upstream_gene_variant 0.59
rpoC 763148 c.-222G>C upstream_gene_variant 0.25
rpoC 763483 c.114G>C synonymous_variant 0.38
rpoC 763486 c.117T>C synonymous_variant 0.44
rpoC 763492 c.123G>C synonymous_variant 0.55
rpoC 763507 c.138G>C synonymous_variant 0.36
rpoC 763528 c.159G>C synonymous_variant 0.67
rpoC 763531 c.162G>C synonymous_variant 0.6
rpoC 763534 c.165T>C synonymous_variant 0.6
rpoC 763537 c.168C>G synonymous_variant 0.6
rpoC 763546 c.177A>G synonymous_variant 0.58
rpoC 763550 p.Tyr61Ala missense_variant 0.5
rpoC 763570 c.201G>C synonymous_variant 0.27
rpoC 763578 p.Phe70Tyr missense_variant 0.27
rpoC 763585 c.216C>G synonymous_variant 0.23
rpoC 763606 c.237C>A synonymous_variant 0.19
rpoC 763615 c.246G>C synonymous_variant 0.14
rpoC 763618 c.249C>T synonymous_variant 0.15
rpoC 763622 p.Ala85Ser missense_variant 0.27
rpoC 763636 c.267T>C synonymous_variant 0.18
rpoC 763642 c.273G>C synonymous_variant 0.17
rpoC 763647 p.Gly93Ala missense_variant 0.2
rpoC 763655 p.Glu96Lys missense_variant 0.2
rpoC 763660 c.291T>C synonymous_variant 0.29
rpoC 763666 c.297G>C synonymous_variant 0.17
rpoC 763669 c.300C>G synonymous_variant 0.24
rpoC 763675 c.306C>G synonymous_variant 0.29
rpoC 763696 c.327T>C synonymous_variant 0.12
rpoC 763699 c.330G>T synonymous_variant 0.64
rpoC 763708 c.339G>C synonymous_variant 0.73
rpoC 763714 c.345G>C synonymous_variant 0.77
rpoC 763717 c.348T>C synonymous_variant 0.81
rpoC 763718 p.Leu117Val missense_variant 0.64
rpoC 763723 c.354G>C synonymous_variant 0.73
rpoC 763724 p.Asp119Asn missense_variant 0.73
rpoC 763729 c.360G>C synonymous_variant 0.71
rpoC 763732 c.363C>G synonymous_variant 0.8
rpoC 763735 c.366G>C synonymous_variant 0.76
rpoC 763744 c.375G>C synonymous_variant 0.67
rpoC 763751 p.Ile128Val missense_variant 0.84
rpoC 763765 c.396T>C synonymous_variant 0.13
rpoC 763772 p.Val135Met missense_variant 0.79
rpoC 763967 p.Gly200Ser missense_variant 0.15
rpoC 764322 p.Pro318Gln missense_variant 0.12
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.17
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.6
rpoC 764410 c.1041G>C synonymous_variant 0.67
rpoC 764424 p.Asn352Thr missense_variant 0.7
rpoC 764428 c.1059G>A synonymous_variant 0.7
rpoC 764431 c.1062G>C synonymous_variant 0.7
rpoC 764434 c.1065A>G synonymous_variant 0.7
rpoC 764435 c.1066_1068delAGGinsCGC synonymous_variant 0.7
rpoC 764441 p.Ile358Leu missense_variant 0.75
rpoC 764446 p.Asp359Glu missense_variant 0.76
rpoC 764455 c.1086G>C synonymous_variant 0.77
rpoC 764458 c.1089G>C synonymous_variant 0.77
rpoC 764461 c.1092A>G synonymous_variant 0.78
rpoC 764485 c.1116G>C synonymous_variant 0.83
rpoC 764491 c.1122G>T synonymous_variant 0.81
rpoC 764497 c.1128A>G synonymous_variant 0.75
rpoC 764503 c.1134G>T synonymous_variant 0.88
rpoC 764509 c.1140G>C synonymous_variant 0.89
rpoC 764512 c.1143G>C synonymous_variant 0.82
rpoC 764521 c.1152T>C synonymous_variant 0.79
rpoC 764524 c.1155C>T synonymous_variant 0.2
rpoC 764530 c.1161C>T synonymous_variant 0.2
rpoC 764533 c.1164C>T synonymous_variant 0.15
rpoC 764536 c.1167G>C synonymous_variant 0.71
rpoC 764542 c.1173C>T synonymous_variant 0.24
rpoC 764543 p.Thr392Ala missense_variant 0.47
rpoC 764548 c.1179G>C synonymous_variant 0.46
rpoC 764566 c.1197C>G synonymous_variant 0.61
rpoC 764572 c.1203G>C synonymous_variant 0.12
rpoC 764573 p.Leu402Ile missense_variant 0.38
rpoC 764578 c.1209C>G synonymous_variant 0.35
rpoC 764581 c.1212T>C synonymous_variant 0.47
rpoC 764582 p.Leu405Met missense_variant 0.47
rpoC 764593 c.1224C>T synonymous_variant 0.23
rpoC 764602 c.1233C>T synonymous_variant 0.59
rpoC 764605 c.1236G>T synonymous_variant 0.65
rpoC 764611 c.1242G>T synonymous_variant 0.69
rpoC 764623 c.1254C>G synonymous_variant 0.16
rpoC 764626 c.1257C>T synonymous_variant 0.41
rpoC 764632 c.1263T>C synonymous_variant 0.65
rpoC 764635 c.1266C>G synonymous_variant 0.14
rpoC 764644 c.1275G>T synonymous_variant 0.14
rpoC 764647 c.1278C>T synonymous_variant 0.56
rpoC 764650 c.1281G>T synonymous_variant 0.76
rpoC 764653 c.1284G>C synonymous_variant 0.58
rpoC 764656 c.1287C>T synonymous_variant 0.68
rpoC 764662 c.1293G>C synonymous_variant 0.81
rpoC 764664 p.Val432Gly missense_variant 0.14
rpoC 764671 c.1302G>C synonymous_variant 0.22
rpoC 764677 c.1308C>G synonymous_variant 0.54
rpoC 764678 p.Lys437Gln missense_variant 0.54
rpoC 764692 c.1323C>T synonymous_variant 0.48
rpoC 764703 p.Lys445Ser missense_variant 0.21
rpoC 764706 p.Leu446Gln missense_variant 0.53
rpoC 764713 c.1344G>C synonymous_variant 0.53
rpoC 764731 c.1362G>C synonymous_variant 0.31
rpoC 764737 c.1368G>C synonymous_variant 0.15
rpoC 765852 p.Lys828Arg missense_variant 0.22
rpoC 765907 c.2538G>C synonymous_variant 0.33
rpoC 765923 p.Asn852Ala missense_variant 0.22
rpoC 765937 c.2568T>C synonymous_variant 0.25
rpoC 765940 c.2571A>T synonymous_variant 0.3
rpoC 765947 c.2578T>C synonymous_variant 0.27
rpoC 765958 c.2589C>G synonymous_variant 0.3
rpoC 765962 c.2593T>C synonymous_variant 0.27
rpoC 765967 c.2598C>T synonymous_variant 0.27
rpoC 765988 c.2619G>C synonymous_variant 0.27
rpoC 765991 c.2622C>G synonymous_variant 0.2
rpoC 766003 c.2634G>C synonymous_variant 0.2
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781616 c.57C>G synonymous_variant 0.17
rpsL 781623 p.Ala22Pro missense_variant 0.22
rpsL 781628 c.69T>G synonymous_variant 0.22
rpsL 781638 c.79_80delAGinsTC synonymous_variant 0.25
rpsL 781643 c.84G>C synonymous_variant 0.25
rpsL 781652 c.93T>C synonymous_variant 0.22
rpsL 781655 c.96T>C synonymous_variant 0.22
rpsL 781658 c.99A>G synonymous_variant 0.22
rpsL 781667 c.108C>T synonymous_variant 0.44
rpsL 781682 c.123T>G synonymous_variant 0.44
rpsL 781703 c.144G>T synonymous_variant 0.36
rpsL 781706 c.147T>G synonymous_variant 0.29
rpsL 781709 c.150G>A synonymous_variant 0.27
rpsL 781715 c.156T>C synonymous_variant 0.17
rpsL 781740 p.Val61Ile missense_variant 0.17
rpsL 781745 c.186G>A synonymous_variant 0.32
rpsL 781751 c.192G>C synonymous_variant 0.55
rpsL 781760 c.201T>C synonymous_variant 0.46
rpsL 781766 c.207C>T synonymous_variant 0.65
rpsL 781768 p.Glu70Val missense_variant 0.17
rpsL 781772 c.213C>T synonymous_variant 0.24
rpsL 781793 c.234G>C synonymous_variant 0.14
rpsL 781796 p.Met79Ile missense_variant 0.75
rpsL 781802 c.243G>C synonymous_variant 0.68
rpsL 781811 c.252C>T synonymous_variant 0.75
rpsL 781814 c.255C>T synonymous_variant 0.65
rpsL 781817 c.258G>T synonymous_variant 0.65
rpsL 781832 c.273T>C synonymous_variant 0.62
rpsL 781835 c.276T>C synonymous_variant 0.5
rpsL 781841 c.282C>T synonymous_variant 0.56
rpsL 781845 p.Lys96Arg missense_variant 0.36
rpsL 781851 p.Ile98Val missense_variant 0.4
rpsL 781868 c.309T>C synonymous_variant 0.4
rpsL 781871 c.312G>C synonymous_variant 0.25
Rv1258c 1407350 c.-10C>T upstream_gene_variant 0.18
atpE 1461063 p.Ala7Ser missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471996 n.151C>T non_coding_transcript_exon_variant 0.4
rrs 1472023 n.178G>C non_coding_transcript_exon_variant 0.67
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.95
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.91
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.85
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.88
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.9
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.99
rrs 1472150 n.305T>G non_coding_transcript_exon_variant 0.97
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.2
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.84
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.72
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.2
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.63
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.97
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.63
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.94
rrs 1472279 n.434T>G non_coding_transcript_exon_variant 0.15
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.88
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.56
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.58
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.5
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.75
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.4
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.4
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.62
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.67
rrs 1472484 n.639A>C non_coding_transcript_exon_variant 0.67
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 1.0
rrs 1472504 n.659A>T non_coding_transcript_exon_variant 0.29
rrs 1472505 n.660G>A non_coding_transcript_exon_variant 0.25
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.4
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.3
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.36
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.5
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.63
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.26
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.65
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.73
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.55
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.29
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.96
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.98
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.31
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.68
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.67
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.51
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.32
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 1.0
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 1.0
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.15
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.82
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.67
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 0.67
rrs 1472677 n.832C>T non_coding_transcript_exon_variant 0.67
rrs 1472682 n.837T>G non_coding_transcript_exon_variant 1.0
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 1.0
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.5
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.45
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.12
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.45
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.33
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.67
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.34
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.33
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.38
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.37
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.58
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.4
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.38
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.97
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.46
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.29
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472840 n.995A>G non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.9
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.56
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.97
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.66
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.3
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.99
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.99
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.3
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.28
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.95
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.56
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.62
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.95
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.88
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.96
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.91
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.62
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.63
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.96
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.85
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.98
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.44
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.39
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.98
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.95
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.13
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.84
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.92
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.7
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.89
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.17
rrs 1473163 n.1318C>A non_coding_transcript_exon_variant 0.17
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.88
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.82
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.92
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.89
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.9
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.91
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 1.0
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.86
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 1.0
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 1.0
rrs 1473365 n.1520C>A non_coding_transcript_exon_variant 0.22
rrl 1473384 n.-274A>G upstream_gene_variant 0.4
rrl 1474123 n.466A>G non_coding_transcript_exon_variant 1.0
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 1.0
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0
rrl 1474142 n.485C>T non_coding_transcript_exon_variant 1.0
rrl 1474143 n.486T>C non_coding_transcript_exon_variant 1.0
rrl 1474150 n.493C>T non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474163 n.506C>T non_coding_transcript_exon_variant 0.6
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.8
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.97
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.88
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.9
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.21
rrl 1474264 n.607T>G non_coding_transcript_exon_variant 0.17
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.13
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.5
rrl 1474270 n.613T>G non_coding_transcript_exon_variant 0.25
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 0.43
rrl 1474272 n.615C>T non_coding_transcript_exon_variant 0.67
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.67
rrl 1474282 n.625G>T non_coding_transcript_exon_variant 0.4
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.67
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474326 n.669T>A non_coding_transcript_exon_variant 0.5
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 1.0
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.83
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474381 n.724T>G non_coding_transcript_exon_variant 1.0
rrl 1474383 n.726G>T non_coding_transcript_exon_variant 1.0
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474405 n.749delT non_coding_transcript_exon_variant 1.0
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.67
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.8
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.75
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.86
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.92
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.92
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.92
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.87
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.35
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.5
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.47
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.88
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.44
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.47
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.38
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.16
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.21
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 0.22
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>G non_coding_transcript_exon_variant 0.78
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474643 n.986A>G non_coding_transcript_exon_variant 0.75
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 0.28
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 1.0
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.67
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.33
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 1.0
rrl 1474706 n.1049G>A non_coding_transcript_exon_variant 0.67
rrl 1474734 n.1077G>A non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.98
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.65
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.81
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.59
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.22
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.15
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.85
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.15
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.81
rrl 1474928 n.1271C>T non_coding_transcript_exon_variant 0.14
rrl 1475059 n.1403_1404insTA non_coding_transcript_exon_variant 1.0
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 1.0
rrl 1475065 n.1409_1411delCAA non_coding_transcript_exon_variant 1.0
rrl 1475080 n.1425_1426delCC non_coding_transcript_exon_variant 1.0
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 1.0
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 1.0
rrl 1475109 n.1452C>T non_coding_transcript_exon_variant 0.44
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 1.0
rrl 1475137 n.1480A>T non_coding_transcript_exon_variant 0.5
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 1.0
rrl 1475172 n.1515A>G non_coding_transcript_exon_variant 0.5
rrl 1475175 n.1518G>C non_coding_transcript_exon_variant 0.5
rrl 1475180 n.1523G>T non_coding_transcript_exon_variant 0.33
rrl 1475188 n.1531C>G non_coding_transcript_exon_variant 0.6
rrl 1475499 n.1842C>T non_coding_transcript_exon_variant 1.0
rrl 1475518 n.1861A>G non_coding_transcript_exon_variant 1.0
rrl 1475521 n.1864T>C non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>T non_coding_transcript_exon_variant 1.0
rrl 1475529 n.1872A>G non_coding_transcript_exon_variant 1.0
rrl 1475532 n.1875A>T non_coding_transcript_exon_variant 1.0
rrl 1475538 n.1881T>C non_coding_transcript_exon_variant 1.0
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 1.0
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 1.0
rrl 1475639 n.1982C>G non_coding_transcript_exon_variant 1.0
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 1.0
rrl 1475655 n.1998T>G non_coding_transcript_exon_variant 1.0
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 1.0
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.86
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.71
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.88
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.89
rrl 1475754 n.2097G>A non_coding_transcript_exon_variant 0.56
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 1.0
rrl 1475766 n.2109_2110insCTTTTTGTT non_coding_transcript_exon_variant 0.25
rrl 1475774 n.2117C>T non_coding_transcript_exon_variant 0.45
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.92
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.27
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.92
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.93
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.66
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.25
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.4
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.62
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.62
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.56
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.38
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.61
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.96
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.83
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.79
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.77
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.75
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.83
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.8
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475995 n.2338G>C non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 1.0
rrl 1475998 n.2341C>G non_coding_transcript_exon_variant 1.0
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.67
rrl 1476140 n.2483T>C non_coding_transcript_exon_variant 0.13
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.17
rrl 1476164 n.2507A>T non_coding_transcript_exon_variant 0.54
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.18
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.93
rrl 1476183 n.2526A>G non_coding_transcript_exon_variant 0.19
rrl 1476187 n.2530T>C non_coding_transcript_exon_variant 0.19
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476194 n.2537A>T non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.18
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.88
rrl 1476207 n.2550T>C non_coding_transcript_exon_variant 0.81
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.94
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.88
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.78
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.24
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.17
rrl 1476229 n.2572C>G non_coding_transcript_exon_variant 0.22
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.35
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.55
rrl 1476252 n.2595T>A non_coding_transcript_exon_variant 0.67
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.69
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.43
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.38
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476267 n.2610G>T non_coding_transcript_exon_variant 0.4
rrl 1476276 n.2619C>A non_coding_transcript_exon_variant 0.25
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.2
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.8
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.2
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 1.0
rrl 1476295 n.2638C>A non_coding_transcript_exon_variant 1.0
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 1.0
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 1.0
rrl 1476306 n.2649A>G non_coding_transcript_exon_variant 1.0
rrl 1476307 n.2650A>T non_coding_transcript_exon_variant 1.0
rrl 1476311 n.2654G>T non_coding_transcript_exon_variant 1.0
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 1.0
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.19
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.94
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.95
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.75
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.73
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.96
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.54
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.9
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.81
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.76
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.29
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.75
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.18
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.78
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.89
rrl 1476592 n.2935G>A non_coding_transcript_exon_variant 0.2
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.3
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.2
rrl 1476600 n.2943A>C non_coding_transcript_exon_variant 0.33
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.33
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.5
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.75
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.88
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.83
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.75
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.6
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.88
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.5
rrl 1476633 n.2976A>G non_coding_transcript_exon_variant 0.38
rrl 1476664 n.3007T>A non_coding_transcript_exon_variant 0.75
rrl 1476668 n.3011C>T non_coding_transcript_exon_variant 0.75
rrl 1476680 n.3023T>C non_coding_transcript_exon_variant 0.67
rpsA 1833628 c.87G>C synonymous_variant 0.2
rpsA 1833649 c.108C>T synonymous_variant 0.42
rpsA 1833661 c.120A>G synonymous_variant 0.46
rpsA 1833667 c.126C>T synonymous_variant 0.46
rpsA 1833668 p.Ile43Val missense_variant 0.46
rpsA 1833676 c.135A>G synonymous_variant 0.43
rpsA 1833679 c.138G>C synonymous_variant 0.4
rpsA 1833684 p.Arg48His missense_variant 0.38
rpsA 1833694 c.153G>C synonymous_variant 0.46
rpsA 1833721 c.180A>G synonymous_variant 0.36
rpsA 1833724 c.183C>T synonymous_variant 0.42
rpsA 1833727 c.186G>C synonymous_variant 0.25
rpsA 1833732 p.Pro64Leu missense_variant 0.22
rpsA 1833736 c.195C>T synonymous_variant 0.22
rpsA 1833742 c.201A>G synonymous_variant 0.22
rpsA 1833905 p.Lys122Glu missense_variant 0.38
rpsA 1833912 p.Glu124Gly missense_variant 0.38
rpsA 1833915 p.Ala125Val missense_variant 0.43
rpsA 1833921 p.Lys127Thr missense_variant 0.5
rpsA 1833926 p.Thr129Ser missense_variant 0.5
rpsA 1833952 c.411C>T synonymous_variant 0.43
rpsA 1833955 c.414G>C synonymous_variant 0.43
rpsA 1833961 c.420C>G synonymous_variant 0.43
rpsA 1833970 c.429G>C synonymous_variant 0.4
rpsA 1834040 p.Lys167Gln missense_variant 0.29
rpsA 1834064 p.Glu175* stop_gained 0.25
rpsA 1834093 c.552G>C synonymous_variant 0.22
rpsA 1834096 c.555G>T synonymous_variant 0.22
rpsA 1834102 c.561T>C synonymous_variant 0.22
rpsA 1834108 c.567C>T synonymous_variant 0.29
rpsA 1834189 c.648G>C synonymous_variant 0.25
rpsA 1834195 c.654G>C synonymous_variant 0.68
rpsA 1834228 c.687C>T synonymous_variant 0.82
rpsA 1834234 c.693G>C synonymous_variant 0.9
rpsA 1834240 c.699T>C synonymous_variant 0.87
rpsA 1834246 c.705G>T synonymous_variant 0.79
rpsA 1834249 c.708T>C synonymous_variant 0.92
rpsA 1834261 c.720A>G synonymous_variant 0.95
rpsA 1834264 c.723G>C synonymous_variant 0.95
rpsA 1834294 c.753G>C synonymous_variant 0.86
rpsA 1834298 p.Gln253Glu missense_variant 0.81
rpsA 1834303 c.762T>C synonymous_variant 0.36
rpsA 1834306 c.765T>C synonymous_variant 0.73
rpsA 1834307 p.Asp256Gln missense_variant 0.73
rpsA 1834312 c.771G>A synonymous_variant 0.73
rpsA 1834327 c.786G>T synonymous_variant 0.76
rpsA 1834345 c.804C>T synonymous_variant 0.62
rpsA 1834348 c.807T>C synonymous_variant 0.54
rpsA 1834354 c.813G>C synonymous_variant 0.25
rpsA 1834387 c.846C>T synonymous_variant 0.2
rpsA 1834411 c.870T>C synonymous_variant 0.54
rpsA 1834417 c.876G>C synonymous_variant 0.54
rpsA 1834423 c.882G>C synonymous_variant 0.67
rpsA 1834427 p.Ile296Val missense_variant 0.67
rpsA 1834435 c.894G>C synonymous_variant 0.73
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.6
rpsA 1834456 c.915T>C synonymous_variant 0.6
rpsA 1834459 c.918G>C synonymous_variant 0.69
rpsA 1834465 c.924T>C synonymous_variant 0.69
rpsA 1834468 c.927A>G synonymous_variant 0.67
rpsA 1834486 p.Glu315Asp missense_variant 0.67
rpsA 1834489 c.948T>C synonymous_variant 0.67
rpsA 1834501 c.960G>C synonymous_variant 0.29
rpsA 1834504 c.963G>C synonymous_variant 0.29
rpsA 1834522 c.981C>G synonymous_variant 0.25
rpsA 1834523 p.Glu328Gln missense_variant 0.44
rpsA 1834546 p.Asp335Glu missense_variant 0.4
rpsA 1834552 c.1013_1015delTTG disruptive_inframe_deletion 0.33
rpsA 1834558 c.1017_1018insAAG conservative_inframe_insertion 0.29
rpsA 1834570 p.Asp343Glu missense_variant 0.29
rpsA 1834572 p.Ala344Val missense_variant 0.29
rpsA 1834574 p.Met345Phe missense_variant 0.29
rpsA 1834609 c.1068T>C synonymous_variant 0.25
rpsA 1834612 c.1071G>C synonymous_variant 0.25
rpsA 1834619 c.1078T>C synonymous_variant 0.2
rpsA 1834624 c.1083G>C synonymous_variant 0.18
rpsA 1834633 c.1092A>G synonymous_variant 0.2
rpsA 1834639 c.1098T>C synonymous_variant 0.2
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102646 p.Glu133Lys missense_variant 0.22
ndh 2103081 c.-39A>T upstream_gene_variant 0.25
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2170461 p.Gly51Glu missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289047 c.195C>T synonymous_variant 1.0
pncA 2289365 c.-125delC upstream_gene_variant 1.0
kasA 2518868 p.Glu252* stop_gained 0.18
ahpC 2726105 c.-88G>A upstream_gene_variant 1.0
thyA 3073874 p.Ile200Val missense_variant 0.25
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087621 p.Ala268Thr missense_variant 0.15
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
clpC1 4038826 p.Ile627Val missense_variant 0.18
clpC1 4038836 c.1869G>C synonymous_variant 0.2
clpC1 4038839 c.1866G>C synonymous_variant 0.22
clpC1 4038842 c.1863G>C synonymous_variant 0.22
clpC1 4038860 c.1845G>C synonymous_variant 0.2
clpC1 4038872 c.1833C>G synonymous_variant 0.22
clpC1 4038878 c.1827A>G synonymous_variant 0.27
clpC1 4038890 p.Glu605Asp missense_variant 0.27
clpC1 4038905 c.1800A>C synonymous_variant 0.27
clpC1 4039682 c.1023C>T synonymous_variant 0.29
clpC1 4039691 c.1014G>C synonymous_variant 0.25
clpC1 4039694 c.1011G>C synonymous_variant 0.25
clpC1 4039697 c.1008C>G synonymous_variant 0.25
clpC1 4039700 c.1005C>T synonymous_variant 0.22
clpC1 4039724 c.981A>G synonymous_variant 0.15
clpC1 4039826 c.879C>G synonymous_variant 0.15
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.15
clpC1 4039838 p.Leu289Ile missense_variant 0.27
clpC1 4039865 c.840T>C synonymous_variant 0.33
clpC1 4039871 c.834C>G synonymous_variant 0.3
clpC1 4039875 p.Asn277Arg missense_variant 0.3
clpC1 4039889 c.816G>C synonymous_variant 0.38
clpC1 4039898 c.807C>G synonymous_variant 0.22
clpC1 4040003 c.702G>C synonymous_variant 0.29
clpC1 4040015 p.Ala230Ser missense_variant 0.19
clpC1 4040033 c.672G>C synonymous_variant 0.17
clpC1 4040045 c.660C>G synonymous_variant 0.2
clpC1 4040057 c.648C>G synonymous_variant 0.21
clpC1 4040063 c.642G>C synonymous_variant 0.15
clpC1 4040066 c.639G>C synonymous_variant 0.2
clpC1 4040069 c.636G>C synonymous_variant 0.17
clpC1 4040090 c.615T>C synonymous_variant 0.23
clpC1 4040096 c.609G>C synonymous_variant 0.17
embC 4240172 p.Val104Met missense_variant 1.0
embC 4240458 p.Gly199Val missense_variant 0.15
embC 4241562 p.Arg567His missense_variant 1.0
embC 4242075 p.Arg738Gln missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4248468 p.Tyr652Cys missense_variant 0.17
aftB 4266965 c.1872A>G synonymous_variant 0.14
ubiA 4269247 p.Leu196Pro missense_variant 0.17
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0