EBG00000313339 - n.979A>C
Drug resistance types
17 Sensitive
24 RR-TB
9 HR-TB
37 MDR-TB
15 Pre-XDR-TB
0 XDR-TB
137 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 21 |
| lineage2.2.1 | 41 |
| lineage4.8 | 21 |
| lineage4.1.3 | 2 |
| lineage4.8.1 | 3 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage4.6 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.1.2.1 | 13 |
| lineage4.1.1.3.1 | 1 |
| lineage4.5 | 2 |
| lineage4.3.3 | 13 |
| lineage3.1.2.2 | 2 |
| lineage4.4.1.1.1 | 5 |
| lineage4.9 | 19 |
| lineage4.3.4.2 | 2 |
| lineage4.6.2.2 | 3 |
| lineage3.1.1 | 6 |
| lineage4.3.4.2.1 | 2 |
| lineage2.2.2 | 6 |
| lineage4.1.2 | 5 |
| lineage3;lineage4 | 1 |
| lineage3.1.2.1 | 4 |
| lineage6.1.2 | 1 |
| lineage4.1.1.1 | 4 |
| lineage4.3.2.1 | 1 |
| lineage1.1.2 | 2 |
| lineage4.7 | 4 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage4.4.1.1 | 6 |
| lineage4.1.1.3 | 6 |
| lineage4.3 | 2 |
| lineage4 | 3 |
| lineage4.2.2.2 | 4 |
| 2 | |
| lineage1.2.2.2 | 2 |
| lineage4.3.4;lineage4.9 | 1 |
| lineage4.2.1 | 3 |
| lineage1.2.2 | 1 |
| lineage1.1.3.1 | 3 |
| lineage4.2.2 | 1 |
| lineage4.3.1.1 | 4 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage5 | 1 |
| lineage4.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.8.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage5.1.1 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 239 |
Geographic prevalence
Country level data for this variant is available for 13 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6044993 | Other | lineage3 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | ERR4821761 | Other | lineage3 | gb | ERR4820151 | Other | lineage4.8 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR6044936 | Other | lineage4.6 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4820736 | Sensitive | lineage4.1.2.1 | gb | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR9971088 | RR-TB | lineage2.2.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR7069319 | Other | lineage4.5 | None | SRR6046815 | Other | lineage3 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR10315707 | MDR-TB | lineage4.4.1.1.1 | None | ERR4816184 | Other | lineage4.1.2.1 | None | ERR10796626 | Other | lineage4.1.2.1 | None | SRR3675552 | Other | lineage4.9 | None | SRR7068873 | Other | lineage4.8 | None | SRR6046117 | Other | lineage4.9 | None | SRR11342695 | MDR-TB | lineage4.8 | None | ERR10796633 | Other | lineage4.3.4.2 | None | ERR4816322 | Other | lineage4.9 | None | SRR9971017 | HR-TB | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | ERR4818050 | Sensitive | lineage4.6.2.2 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR4820019 | Other | lineage4.3.4.2.1 | None | SRR18002872 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | ERR4816610 | Other | lineage4.3.3 | None | SRR7070479 | Other | lineage4.1.2 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR7069013 | Other | lineage4.8 | None | SRR3675230 | Other | lineage3;lineage4 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR7069800 | Other | lineage3.1.2.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | SRR19304094 | Other | lineage6.1.2 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR10315696 | Sensitive | lineage4.3.2.1 | None | ERR978765 | RR-TB | lineage4.8 | None | ERR10796640 | Other | lineage4.1.2.1 | None | SRR7070293 | Other | lineage4.8 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | SRR6044983 | Other | lineage3.1.1 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971223 | Other | lineage2.2.1 | None | ERR4818570 | Other | lineage4.3.3 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | ERR10796595 | Other | lineage4.9 | None | SRR6045125 | Other | lineage1.1.2 | None | ERR4816831 | Other | lineage4.1.2.1 | None | ERR10796594 | Other | lineage4.9 | None | SRR7069669 | Other | lineage3.1.1 | None | ERR4817189 | Other | lineage4.7 | None | ERR9117788 | Other | lineage3 | None | SRR6046668 | Sensitive | lineage1.1.2 | gb | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342643 | MDR-TB | lineage4.1.1.1 | None | SRR7070419 | Other | lineage3 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR4829337 | Sensitive | lineage4.8 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR11342638 | MDR-TB | lineage4.4.1.1.1 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR3675491 | Other | lineage4.7 | None | ERR4817584 | Other | lineage3;lineage4.9 | None | ERR4814623 | Sensitive | lineage4.8 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SRR18003023 | Other | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR4819324 | Other | lineage4.8 | gb | SRR6045957 | Other | lineage4.9 | None | SRR7070461 | Other | lineage3 | None | ERR10796593 | Other | lineage4.3 | None | ERR4820324 | Other | lineage4 | None | SRR5007165 | Other | lineage3 | None | SRR9971246 | MDR-TB | lineage4.1.1.3 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | ERR9117676 | Sensitive | lineage4.2.2.2 | None | SRR11342689 | Other | lineage4.1.2.1 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | SRR6046729 | Other | lineage3 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816690 | Other | None | ERR4817060 | Other | None | SRR7070369 | Other | lineage1.2.2.2 | None | ERR10796575 | Other | lineage4.3.4;lineage4.9 | None | ERR4819166 | Other | lineage3 | gb | ERR4815452 | Other | lineage4.3.3 | None | SRR22048536 | Other | lineage4.3.3 | None | SRR7068875 | Other | lineage3.1.2.2 | None | ERR4819011 | Other | lineage3.1.2.1 | None | SRR7070320 | Other | lineage4.8 | None | SRR7070223 | HR-TB | lineage3 | None | SRR7070602 | Other | lineage4.2.1 | None | SRR7069347 | Other | lineage4.1.2.1 | None | SRR11349193 | RR-TB | lineage4.1.2 | None | ERR4819007 | Other | lineage2.2.1 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | ERR10796583 | Other | lineage2.2.1 | None | SRR3675565 | Other | lineage4 | None | SRR6046291 | Other | lineage3 | None | SRR7070080 | Pre-XDR-TB | lineage3 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR1180252 | Other | lineage4.9 | None | ERR4814362 | Other | lineage4.8 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR1665404 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815923 | Sensitive | lineage4.8 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR867574 | Other | lineage4.9 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR6045603 | Other | lineage4.1.1.3 | None | ERR4820720 | Other | lineage4.1.2.1 | None | SRR18213736 | Other | lineage3 | None | ERR4818126 | Other | lineage1.2.2 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR7069193 | Other | lineage4.3.1.1 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR3675527 | Other | lineage4.9 | None | SRR18003007 | MDR-TB | lineage4.5 | None | ERR867572 | Other | lineage4.9 | None | SRR7070329 | Other | lineage3 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR18002985 | HR-TB | lineage2.2.1 | None | SAMN02585982 | MDR-TB | lineage4.3.3 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR7069030 | Other | lineage3 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | ERR10796617 | Other | lineage4.3.4.1 | None | ERR10796615 | Other | lineage4.3.3;lineage4.9 | None | SRR11342648 | MDR-TB | lineage4.1.1.3 | None | ERR4816967 | Other | lineage5 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | ERR9117812 | Other | lineage4.3.1.1 | None | SRR6045422 | Other | lineage4.3.1.1 | None | ERR867567 | RR-TB | lineage3 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR4821616 | Other | lineage1.1.3.1 | None | SRR3675509 | Other | lineage4.9 | None | SRR7069518 | Other | lineage4.8 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR7069648 | Other | lineage4.6.2.2 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR10315693 | RR-TB | lineage4.1.2 | None | ERR4814507 | Other | lineage2.2.1 | None | SRR11342676 | HR-TB | lineage4.6.2.2 | None | ERR4818691 | Other | lineage4.8 | None | ERR4814681 | Other | lineage2.2.1 | None | ERR10796580 | Other | lineage4 | None | SRR7069839 | Other | lineage4.8 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR2513819 | Pre-XDR-TB | lineage4.3.3 | gb | ERR867571 | Other | lineage4.9 | None | ERR4815502 | Other | lineage4.1 | None | ERR2027230 | Other | lineage4.2.2.2 | None | ERR4816856 | Other | lineage4.1.2.1 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR10796566 | Other | lineage4.9 | None | ERR4815784 | Other | lineage2.2.1 | gb | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11349159 | MDR-TB | lineage2.2.2 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR6046246 | Other | lineage3 | None | SRR18002961 | Other | lineage2.2.1 | None | SRR7070134 | Other | lineage3.1.1 | None | SRR6045664 | Other | lineage4.2.1 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | SRR9971372 | MDR-TB | lineage4.1.1.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4819772 | Other | lineage1.1.3.1 | None | ERR10796586 | Other | lineage4.9 | None | ERR10796634 | Other | lineage4.7 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR10315579 | Other | lineage2.2.1.1 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR18002956 | Other | lineage2.2.1 | None | ERR10796565 | Other | lineage4.9 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR6044841 | Other | lineage4.9 | None | ERR4821286 | Other | lineage4.8 | None | SRR14801652 | HR-TB | lineage4.3.3 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046020 | Other | lineage3 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | ERR502517 | Other | lineage5.1.1 | None | SRR6046359 | Other | lineage4.7 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR4821704 | Other | lineage4.3.3 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR18213726 | Other | lineage3 | None | SRR6046064 | Other | lineage3 | gb | ERR978766 | RR-TB | lineage4.8 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR4815572 | Other | lineage4.1.2.1 | None | SRR19303985 | Sensitive | lineage4.8 | None | ERR10796597 | Other | lineage4.3.3 | None | ERR10796552 | Sensitive | lineage4.3.4.1 | None | SRR11349201 | MDR-TB | lineage4.1.1.3 | None | SRR11349153 | RR-TB | lineage4.1.1.1 | None | ERR4821679 | Other | lineage4.3.3 | None | SRR7069097 | Other | lineage3.1.2.1 | None | SRR7069027 | MDR-TB | lineage4.3.4.2 | None | SRR9971197 | MDR-TB | lineage4.4.1.1.1 | None | SRR18002876 | MDR-TB | lineage2.2.1;lineage2.2.2 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR10796576 | Sensitive | lineage4.9 | None |
|---|
