TB-Profiler result

Run: ERR4820324
Summary

Run ID: ERR4820324

Sample name:

Date: 01-04-2023 16:37:03

Number of reads: 352178

Percentage reads mapped: 35.21

Strain: lineage4

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.48 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761060 c.1254C>G synonymous_variant 0.22
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.2
rpoB 762024 p.Val740Ile missense_variant 0.38
rpoB 762051 p.His749Tyr missense_variant 0.3
rpoB 762057 p.Ile751Val missense_variant 0.33
rpoB 762062 c.2256T>C synonymous_variant 0.38
rpoB 762065 c.2259T>C synonymous_variant 0.33
rpoB 762071 p.Asp755Glu missense_variant 0.22
rpoB 762080 c.2274G>C synonymous_variant 0.25
rpoB 762085 p.Ala760Glu missense_variant 0.25
rpoB 762089 c.2283G>A synonymous_variant 0.23
rpoB 762092 c.2286G>A synonymous_variant 0.25
rpoB 762110 c.2304G>C synonymous_variant 0.23
rpoB 762114 p.Ile770Val missense_variant 0.15
rpoB 762143 c.2337T>C synonymous_variant 0.21
rpoB 762149 c.2343G>C synonymous_variant 0.23
rpoB 762156 p.Val784Ile missense_variant 0.21
rpoB 762176 c.2370T>C synonymous_variant 0.25
rpoB 762177 p.Arg791Thr missense_variant 0.25
rpoB 762181 p.Asp792Ala missense_variant 0.25
rpoB 762185 c.2379G>C synonymous_variant 0.31
rpoB 762194 c.2388G>C synonymous_variant 0.36
rpoB 762218 c.2412T>C synonymous_variant 0.27
rpoB 762233 c.2427G>C synonymous_variant 0.2
rpoB 762234 p.Pro810Ser missense_variant 0.22
rpoB 762239 c.2433G>A synonymous_variant 0.2
rpoB 762245 c.2439G>C synonymous_variant 0.33
rpoB 762254 c.2448T>C synonymous_variant 0.33
rpoB 762266 c.2460T>C synonymous_variant 0.27
rpoC 762926 c.-444C>G upstream_gene_variant 0.18
rpoC 762929 c.-441G>T upstream_gene_variant 0.18
rpoC 762938 c.-432G>C upstream_gene_variant 0.18
rpoC 762962 c.-408C>T upstream_gene_variant 0.15
rpoC 762971 c.-399G>C upstream_gene_variant 0.17
rpoB 763038 p.Thr1078Ala missense_variant 0.15
rpoC 763043 c.-327G>C upstream_gene_variant 0.36
rpoC 763049 c.-321G>A upstream_gene_variant 0.21
rpoC 763053 c.-317T>C upstream_gene_variant 0.43
rpoC 763070 c.-300T>C upstream_gene_variant 0.38
rpoB 763077 p.Val1091Thr missense_variant 0.4
rpoC 763082 c.-288C>T upstream_gene_variant 0.2
rpoC 763103 c.-267G>C upstream_gene_variant 0.25
rpoC 763115 c.-255T>C upstream_gene_variant 0.21
rpoB 763119 p.Asn1105Asp missense_variant 0.27
rpoC 763127 c.-243G>C upstream_gene_variant 0.17
rpoC 763133 c.-237G>C upstream_gene_variant 0.18
rpoC 763486 c.117T>C synonymous_variant 0.5
rpoC 763492 c.123G>C synonymous_variant 0.67
rpoC 763528 c.159G>C synonymous_variant 0.5
rpoC 763531 c.162G>C synonymous_variant 0.4
rpoC 763660 c.291T>G synonymous_variant 0.5
rpoC 763666 c.297G>C synonymous_variant 0.67
rpoC 763675 c.306C>G synonymous_variant 0.75
rpoC 763699 c.330G>T synonymous_variant 0.67
rpoC 763708 c.339G>C synonymous_variant 0.73
rpoC 763714 c.345G>C synonymous_variant 0.65
rpoC 763717 c.348T>C synonymous_variant 0.65
rpoC 763718 p.Leu117Val missense_variant 0.53
rpoC 763723 c.354G>C synonymous_variant 0.58
rpoC 763724 p.Asp119Asn missense_variant 0.58
rpoC 763729 c.360G>C synonymous_variant 0.55
rpoC 763732 c.363C>G synonymous_variant 0.55
rpoC 763735 c.366G>C synonymous_variant 0.55
rpoC 763744 c.375G>C synonymous_variant 0.5
rpoC 763751 p.Ile128Val missense_variant 0.55
rpoC 763772 p.Val135Met missense_variant 0.33
rpoC 764441 p.Ile358Leu missense_variant 0.29
rpoC 764446 p.Asp359Glu missense_variant 0.25
rpoC 764455 c.1086G>C synonymous_variant 0.25
rpoC 764458 c.1089G>C synonymous_variant 0.25
rpoC 764461 c.1092A>G synonymous_variant 0.25
rpoC 764485 c.1116G>C synonymous_variant 0.38
rpoC 764491 c.1122G>T synonymous_variant 0.38
rpoC 764497 c.1128A>G synonymous_variant 0.29
rpoC 764503 c.1134G>T synonymous_variant 0.33
rpoC 764509 c.1140G>C synonymous_variant 0.43
rpoC 764512 c.1143G>C synonymous_variant 0.29
rpoC 764521 c.1152T>C synonymous_variant 0.6
rpoC 764536 c.1167G>C synonymous_variant 0.33
rpoC 764543 p.Thr392Ala missense_variant 0.18
rpoC 764548 c.1179G>C synonymous_variant 0.22
rpoC 764566 c.1197C>G synonymous_variant 0.33
rpoC 764572 c.1203G>C synonymous_variant 0.18
rpoC 764573 p.Leu402Met missense_variant 0.18
rpoC 764578 c.1209C>G synonymous_variant 0.18
rpoC 764581 c.1212T>C synonymous_variant 0.36
rpoC 764582 p.Leu405Met missense_variant 0.36
rpoC 764602 c.1233C>T synonymous_variant 0.46
rpoC 764605 c.1236G>T synonymous_variant 0.58
rpoC 764611 c.1242G>T synonymous_variant 0.62
rpoC 764626 c.1257C>T synonymous_variant 0.32
rpoC 764632 c.1263T>C synonymous_variant 0.72
rpoC 764644 c.1275G>C synonymous_variant 0.11
rpoC 764647 c.1278C>T synonymous_variant 0.72
rpoC 764650 c.1281G>T synonymous_variant 0.82
rpoC 764653 c.1284G>C synonymous_variant 0.83
rpoC 764656 c.1287C>T synonymous_variant 0.73
rpoC 764662 c.1293G>T synonymous_variant 0.69
rpoC 764677 c.1308C>G synonymous_variant 0.71
rpoC 764678 p.Lys437Gln missense_variant 0.71
rpoC 764701 c.1332C>G synonymous_variant 0.22
rpoC 764706 p.Leu446Gln missense_variant 0.62
rpoC 764713 c.1344G>C synonymous_variant 0.54
rpoC 764731 c.1362G>C synonymous_variant 0.17
rpoC 764737 c.1368G>C synonymous_variant 0.17
rpoC 764746 c.1377G>C synonymous_variant 0.18
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781745 c.186G>A synonymous_variant 0.18
rpsL 781751 c.192G>C synonymous_variant 0.25
rpsL 781760 c.201T>C synonymous_variant 0.21
rpsL 781766 c.207C>T synonymous_variant 0.23
rpsL 781796 p.Met79Ile missense_variant 0.23
rpsL 781802 c.243G>C synonymous_variant 0.18
rpsL 781811 c.252C>T synonymous_variant 0.3
rpsL 781814 c.255C>T synonymous_variant 0.3
rpsL 781817 c.258G>T synonymous_variant 0.3
rpsL 781832 c.273T>C synonymous_variant 0.23
rpsL 781835 c.276T>C synonymous_variant 0.15
rpsL 781841 c.282C>T synonymous_variant 0.27
embR 1417270 c.78C>T synonymous_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 0.75
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.9
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.94
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.19
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.85
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.86
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.84
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.97
rrs 1472150 n.305T>G non_coding_transcript_exon_variant 0.88
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.22
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.87
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.78
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.53
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 1.0
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 1.0
rrs 1472274 n.429A>G non_coding_transcript_exon_variant 0.21
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 1.0
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.8
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.8
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.83
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.83
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.83
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.8
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.8
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.67
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.55
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.43
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.41
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.41
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.54
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.54
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.37
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.57
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.59
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.48
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.98
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.98
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.43
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.53
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.53
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.31
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.53
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.9
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.94
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.29
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.69
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.33
rrs 1472670 n.825G>T non_coding_transcript_exon_variant 0.23
rrs 1472686 n.841G>T non_coding_transcript_exon_variant 0.4
rrs 1472687 n.842_843insC non_coding_transcript_exon_variant 0.5
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 1.0
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 1.0
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.24
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.45
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.42
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.56
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.46
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.49
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.48
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.48
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.47
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.54
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.44
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.49
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.9
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.44
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.31
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.92
rrs 1472840 n.995A>G non_coding_transcript_exon_variant 0.67
rrs 1472875 n.1030T>C non_coding_transcript_exon_variant 0.67
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.97
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.75
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 1.0
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.73
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.25
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 1.0
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 1.0
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.22
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.21
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 1.0
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.76
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.73
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.97
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.97
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 1.0
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.74
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.77
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.98
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.77
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.97
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.24
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.47
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.98
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.92
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 1.0
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.72
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.77
rrs 1473148 n.1303G>T non_coding_transcript_exon_variant 0.21
rrs 1473163 n.1318C>A non_coding_transcript_exon_variant 0.18
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.79
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.77
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.88
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.85
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.85
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.88
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.96
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.91
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.92
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.92
rrl 1474163 n.506C>T non_coding_transcript_exon_variant 0.8
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.83
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.9
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.95
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.95
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.9
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.95
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.95
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 1.0
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474393 n.736A>G non_coding_transcript_exon_variant 0.67
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.67
rrl 1474448 n.791T>C non_coding_transcript_exon_variant 0.75
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.89
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 1.0
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.89
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.91
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.91
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 1.0
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.67
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.36
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.33
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.36
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.44
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.56
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.31
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.31
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 0.4
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>G non_coding_transcript_exon_variant 0.6
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.23
rrl 1474643 n.986A>G non_coding_transcript_exon_variant 0.46
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 0.36
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.75
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.4
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.5
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 1.0
rrl 1474706 n.1049G>A non_coding_transcript_exon_variant 0.57
rrl 1474734 n.1077G>A non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>C non_coding_transcript_exon_variant 1.0
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.57
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.25
rrl 1474783 n.1126G>T non_coding_transcript_exon_variant 0.25
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.22
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.9
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.2
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.9
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.8
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 1.0
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.44
rrl 1474837 n.1180A>G non_coding_transcript_exon_variant 0.14
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 1.0
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 1.0
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 1.0
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 1.0
rrl 1475172 n.1515A>G non_coding_transcript_exon_variant 1.0
rrl 1475499 n.1842C>T non_coding_transcript_exon_variant 0.75
rrl 1475518 n.1861A>G non_coding_transcript_exon_variant 0.75
rrl 1475521 n.1864T>C non_coding_transcript_exon_variant 0.75
rrl 1475526 n.1869C>T non_coding_transcript_exon_variant 0.75
rrl 1475529 n.1872A>G non_coding_transcript_exon_variant 0.75
rrl 1475532 n.1875A>T non_coding_transcript_exon_variant 0.75
rrl 1475538 n.1881T>C non_coding_transcript_exon_variant 0.75
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.5
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.5
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 0.75
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 0.75
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 1.0
rrl 1475715 n.2058G>T non_coding_transcript_exon_variant 0.33
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.78
rrl 1475754 n.2097G>A non_coding_transcript_exon_variant 0.4
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.78
rrl 1475761 n.2104C>T non_coding_transcript_exon_variant 0.29
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.5
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.71
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.6
rrl 1475766 n.2109G>T non_coding_transcript_exon_variant 0.22
rrl 1475774 n.2117C>T non_coding_transcript_exon_variant 0.4
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.8
rrl 1475783 n.2126T>C non_coding_transcript_exon_variant 0.14
rrl 1475791 n.2134A>G non_coding_transcript_exon_variant 0.13
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.33
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 1.0
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.56
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.18
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 1.0
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 1.0
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.22
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 1.0
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.38
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 1.0
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 1.0
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 1.0
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.67
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.78
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.15
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.35
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.17
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.89
rrl 1476187 n.2530T>C non_coding_transcript_exon_variant 0.16
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.74
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.67
rrl 1476207 n.2550T>C non_coding_transcript_exon_variant 0.26
rrl 1476209 n.2552A>G non_coding_transcript_exon_variant 0.11
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.22
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.18
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.93
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.67
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.4
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.5
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.75
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.5
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.5
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.5
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.75
rrl 1476267 n.2610G>T non_coding_transcript_exon_variant 0.5
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.67
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.12
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.95
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.91
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.72
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.71
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.9
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.64
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.91
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 1.0
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 1.0
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.5
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.75
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 1.0
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.5
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 1.0
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 1.0
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.67
rrl 1476542 n.2885T>C non_coding_transcript_exon_variant 0.5
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.42
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.78
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.78
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.33
rrl 1476600 n.2943A>C non_coding_transcript_exon_variant 0.33
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.33
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.36
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.64
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.64
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.3
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.64
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.5
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.64
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.3
rrl 1476633 n.2976A>G non_coding_transcript_exon_variant 0.36
rpsA 1833694 c.153G>C synonymous_variant 0.2
rpsA 1833727 c.186G>C synonymous_variant 0.27
rpsA 1833732 p.Pro64Leu missense_variant 0.2
rpsA 1833736 c.195C>T synonymous_variant 0.2
rpsA 1833742 c.201A>G synonymous_variant 0.2
rpsA 1833770 p.Asn77Asp missense_variant 0.22
rpsA 1833776 p.Val79Ile missense_variant 0.2
rpsA 1833781 c.240T>C synonymous_variant 0.22
rpsA 1833949 c.408T>C synonymous_variant 0.2
rpsA 1833952 c.411C>T synonymous_variant 0.2
rpsA 1833955 c.414G>C synonymous_variant 0.2
rpsA 1833961 c.420C>G synonymous_variant 0.2
rpsA 1833994 c.453G>C synonymous_variant 0.2
rpsA 1834009 c.468C>T synonymous_variant 0.22
rpsA 1834012 c.471G>C synonymous_variant 0.22
rpsA 1834015 c.474G>T synonymous_variant 0.22
rpsA 1834024 c.483G>C synonymous_variant 0.18
rpsA 1834195 c.654G>C synonymous_variant 0.36
rpsA 1834213 c.672G>C synonymous_variant 0.42
rpsA 1834219 c.678C>T synonymous_variant 0.45
rpsA 1834225 c.684C>T synonymous_variant 0.42
rpsA 1834228 c.687C>T synonymous_variant 0.31
rpsA 1834231 c.690T>C synonymous_variant 0.15
rpsA 1834234 c.693G>C synonymous_variant 0.69
rpsA 1834240 c.699T>C synonymous_variant 0.64
rpsA 1834246 c.705G>T synonymous_variant 0.67
rpsA 1834249 c.708T>C synonymous_variant 0.68
rpsA 1834261 c.720A>G synonymous_variant 0.64
rpsA 1834264 c.723G>C synonymous_variant 0.64
rpsA 1834294 c.753G>C synonymous_variant 0.53
rpsA 1834298 p.Gln253Glu missense_variant 0.53
rpsA 1834306 c.765T>C synonymous_variant 0.5
rpsA 1834307 p.Asp256Gln missense_variant 0.5
rpsA 1834327 c.786G>T synonymous_variant 0.47
rpsA 1834345 c.804C>T synonymous_variant 0.25
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.3
rpsA 1834456 c.915T>C synonymous_variant 0.3
rpsA 1834459 c.918G>C synonymous_variant 0.38
rpsA 1834465 c.924T>C synonymous_variant 0.38
rpsA 1834468 c.927A>G synonymous_variant 0.38
rpsA 1834486 p.Glu315Asp missense_variant 0.5
rpsA 1834489 c.948T>C synonymous_variant 0.29
rpsA 1834501 c.960G>C synonymous_variant 0.29
rpsA 1834504 c.963G>C synonymous_variant 0.29
rpsA 1834522 c.981C>T synonymous_variant 0.2
rpsA 1834523 p.Glu328Gln missense_variant 0.18
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2156336 c.-225G>C upstream_gene_variant 0.15
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
Rv2752c 3065805 c.387C>T synonymous_variant 1.0
clpC1 4039981 p.Leu242Ile missense_variant 0.5
clpC1 4039982 c.723G>C synonymous_variant 0.5
clpC1 4039994 p.Glu237Asp missense_variant 0.67
clpC1 4040009 c.696C>G synonymous_variant 0.54
clpC1 4040015 c.690G>C synonymous_variant 0.54
clpC1 4040018 c.687G>C synonymous_variant 0.5
clpC1 4040021 c.684A>C synonymous_variant 0.47
clpC1 4040024 c.681A>G synonymous_variant 0.47
clpC1 4040042 c.663C>T synonymous_variant 0.47
clpC1 4040066 c.639G>C synonymous_variant 0.46
embA 4242643 c.-590C>T upstream_gene_variant 1.0
ethR 4327854 p.Met102Ile missense_variant 1.0
whiB6 4338593 c.-72C>T upstream_gene_variant 0.18
whiB6 4338595 c.-75delG upstream_gene_variant 1.0