Run ID: ERR4820324
Sample name:
Date: 01-04-2023 16:37:03
Number of reads: 352178
Percentage reads mapped: 35.21
Strain: lineage4
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.48 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoB | 761060 | c.1254C>G | synonymous_variant | 0.22 |
rpoB | 761088 | c.1282_1283delAGinsTC | synonymous_variant | 0.2 |
rpoB | 762024 | p.Val740Ile | missense_variant | 0.38 |
rpoB | 762051 | p.His749Tyr | missense_variant | 0.3 |
rpoB | 762057 | p.Ile751Val | missense_variant | 0.33 |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.38 |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.33 |
rpoB | 762071 | p.Asp755Glu | missense_variant | 0.22 |
rpoB | 762080 | c.2274G>C | synonymous_variant | 0.25 |
rpoB | 762085 | p.Ala760Glu | missense_variant | 0.25 |
rpoB | 762089 | c.2283G>A | synonymous_variant | 0.23 |
rpoB | 762092 | c.2286G>A | synonymous_variant | 0.25 |
rpoB | 762110 | c.2304G>C | synonymous_variant | 0.23 |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.15 |
rpoB | 762143 | c.2337T>C | synonymous_variant | 0.21 |
rpoB | 762149 | c.2343G>C | synonymous_variant | 0.23 |
rpoB | 762156 | p.Val784Ile | missense_variant | 0.21 |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.25 |
rpoB | 762177 | p.Arg791Thr | missense_variant | 0.25 |
rpoB | 762181 | p.Asp792Ala | missense_variant | 0.25 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.31 |
rpoB | 762194 | c.2388G>C | synonymous_variant | 0.36 |
rpoB | 762218 | c.2412T>C | synonymous_variant | 0.27 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.2 |
rpoB | 762234 | p.Pro810Ser | missense_variant | 0.22 |
rpoB | 762239 | c.2433G>A | synonymous_variant | 0.2 |
rpoB | 762245 | c.2439G>C | synonymous_variant | 0.33 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.33 |
rpoB | 762266 | c.2460T>C | synonymous_variant | 0.27 |
rpoC | 762926 | c.-444C>G | upstream_gene_variant | 0.18 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 0.18 |
rpoC | 762938 | c.-432G>C | upstream_gene_variant | 0.18 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.15 |
rpoC | 762971 | c.-399G>C | upstream_gene_variant | 0.17 |
rpoB | 763038 | p.Thr1078Ala | missense_variant | 0.15 |
rpoC | 763043 | c.-327G>C | upstream_gene_variant | 0.36 |
rpoC | 763049 | c.-321G>A | upstream_gene_variant | 0.21 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.43 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.38 |
rpoB | 763077 | p.Val1091Thr | missense_variant | 0.4 |
rpoC | 763082 | c.-288C>T | upstream_gene_variant | 0.2 |
rpoC | 763103 | c.-267G>C | upstream_gene_variant | 0.25 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.21 |
rpoB | 763119 | p.Asn1105Asp | missense_variant | 0.27 |
rpoC | 763127 | c.-243G>C | upstream_gene_variant | 0.17 |
rpoC | 763133 | c.-237G>C | upstream_gene_variant | 0.18 |
rpoC | 763486 | c.117T>C | synonymous_variant | 0.5 |
rpoC | 763492 | c.123G>C | synonymous_variant | 0.67 |
rpoC | 763528 | c.159G>C | synonymous_variant | 0.5 |
rpoC | 763531 | c.162G>C | synonymous_variant | 0.4 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.5 |
rpoC | 763666 | c.297G>C | synonymous_variant | 0.67 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.75 |
rpoC | 763699 | c.330G>T | synonymous_variant | 0.67 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.73 |
rpoC | 763714 | c.345G>C | synonymous_variant | 0.65 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.65 |
rpoC | 763718 | p.Leu117Val | missense_variant | 0.53 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.58 |
rpoC | 763724 | p.Asp119Asn | missense_variant | 0.58 |
rpoC | 763729 | c.360G>C | synonymous_variant | 0.55 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.55 |
rpoC | 763735 | c.366G>C | synonymous_variant | 0.55 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.5 |
rpoC | 763751 | p.Ile128Val | missense_variant | 0.55 |
rpoC | 763772 | p.Val135Met | missense_variant | 0.33 |
rpoC | 764441 | p.Ile358Leu | missense_variant | 0.29 |
rpoC | 764446 | p.Asp359Glu | missense_variant | 0.25 |
rpoC | 764455 | c.1086G>C | synonymous_variant | 0.25 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.25 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.25 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.38 |
rpoC | 764491 | c.1122G>T | synonymous_variant | 0.38 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.29 |
rpoC | 764503 | c.1134G>T | synonymous_variant | 0.33 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 0.43 |
rpoC | 764512 | c.1143G>C | synonymous_variant | 0.29 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.6 |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.33 |
rpoC | 764543 | p.Thr392Ala | missense_variant | 0.18 |
rpoC | 764548 | c.1179G>C | synonymous_variant | 0.22 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.33 |
rpoC | 764572 | c.1203G>C | synonymous_variant | 0.18 |
rpoC | 764573 | p.Leu402Met | missense_variant | 0.18 |
rpoC | 764578 | c.1209C>G | synonymous_variant | 0.18 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.36 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.36 |
rpoC | 764602 | c.1233C>T | synonymous_variant | 0.46 |
rpoC | 764605 | c.1236G>T | synonymous_variant | 0.58 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.62 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.32 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.72 |
rpoC | 764644 | c.1275G>C | synonymous_variant | 0.11 |
rpoC | 764647 | c.1278C>T | synonymous_variant | 0.72 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.82 |
rpoC | 764653 | c.1284G>C | synonymous_variant | 0.83 |
rpoC | 764656 | c.1287C>T | synonymous_variant | 0.73 |
rpoC | 764662 | c.1293G>T | synonymous_variant | 0.69 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.71 |
rpoC | 764678 | p.Lys437Gln | missense_variant | 0.71 |
rpoC | 764701 | c.1332C>G | synonymous_variant | 0.22 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 0.62 |
rpoC | 764713 | c.1344G>C | synonymous_variant | 0.54 |
rpoC | 764731 | c.1362G>C | synonymous_variant | 0.17 |
rpoC | 764737 | c.1368G>C | synonymous_variant | 0.17 |
rpoC | 764746 | c.1377G>C | synonymous_variant | 0.18 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781745 | c.186G>A | synonymous_variant | 0.18 |
rpsL | 781751 | c.192G>C | synonymous_variant | 0.25 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.21 |
rpsL | 781766 | c.207C>T | synonymous_variant | 0.23 |
rpsL | 781796 | p.Met79Ile | missense_variant | 0.23 |
rpsL | 781802 | c.243G>C | synonymous_variant | 0.18 |
rpsL | 781811 | c.252C>T | synonymous_variant | 0.3 |
rpsL | 781814 | c.255C>T | synonymous_variant | 0.3 |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.3 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.23 |
rpsL | 781835 | c.276T>C | synonymous_variant | 0.15 |
rpsL | 781841 | c.282C>T | synonymous_variant | 0.27 |
embR | 1417270 | c.78C>T | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472068 | n.223T>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472078 | n.233C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472150 | n.305T>G | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472258 | n.413A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472274 | n.429A>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472285 | n.440A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472338 | n.493A>G | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472412 | n.567A>G | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472416 | n.571C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472427 | n.582T>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472513 | n.668T>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472549 | n.704G>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472686 | n.841G>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472687 | n.842_843insC | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472690 | n.845C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472840 | n.995A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472875 | n.1030T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472954 | n.1109T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472958 | n.1113A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472973 | n.1128A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472974 | n.1129A>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472988 | n.1143T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472992 | n.1147A>G | non_coding_transcript_exon_variant | 0.76 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.74 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1473101 | n.1256C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.72 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473148 | n.1303G>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473163 | n.1318C>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.79 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473276 | n.1431A>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1473277 | n.1432G>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1473301 | n.1456T>G | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1474163 | n.506C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474164 | n.507C>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474181 | n.524C>A | non_coding_transcript_exon_variant | 0.9 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474199 | n.542G>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1474200 | n.545delT | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474351 | n.694G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474353 | n.696A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474355 | n.698A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474393 | n.736A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474402 | n.745T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474448 | n.791T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474467 | n.810A>G | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474495 | n.838G>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474498 | n.841G>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474505 | n.848C>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474508 | n.851C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474527 | n.870T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474529 | n.872A>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474530 | n.873G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474539 | n.882C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474540 | n.883T>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1474626 | n.969T>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474634 | n.977T>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474636 | n.979A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474637 | n.980C>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474640 | n.983C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474643 | n.986A>G | non_coding_transcript_exon_variant | 0.46 |
rrl | 1474658 | n.1001A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474663 | n.1006C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474672 | n.1015C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474673 | n.1016T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474676 | n.1019T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474677 | n.1020A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474692 | n.1035G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474706 | n.1049G>A | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474734 | n.1077G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474734 | n.1077G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474736 | n.1079C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474780 | n.1123C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474783 | n.1126G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474790 | n.1133C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 0.9 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474832 | n.1175A>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474837 | n.1180A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474903 | n.1246T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475104 | n.1447T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475114 | n.1457C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475124 | n.1467A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475171 | n.1514C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475172 | n.1515A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475499 | n.1842C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475518 | n.1861A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475521 | n.1864T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475526 | n.1869C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475529 | n.1872A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475532 | n.1875A>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475538 | n.1881T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475544 | n.1887A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475545 | n.1888T>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475548 | n.1891C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475549 | n.1892T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475703 | n.2046A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475715 | n.2058G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475751 | n.2094C>A | non_coding_transcript_exon_variant | 0.78 |
rrl | 1475754 | n.2097G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475756 | n.2099T>C | non_coding_transcript_exon_variant | 0.78 |
rrl | 1475761 | n.2104C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475762 | n.2105G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475764 | n.2107A>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1475765 | n.2108A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475766 | n.2109G>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475774 | n.2117C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475783 | n.2126T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475791 | n.2134A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1475892 | n.2235A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475945 | n.2288C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476179 | n.2522C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476187 | n.2530T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476204 | n.2547C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476207 | n.2550T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476209 | n.2552A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476221 | n.2564T>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476267 | n.2610G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476513 | n.2856G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476542 | n.2885T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476594 | n.2937C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476600 | n.2943A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476603 | n.2946G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476607 | n.2950C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476614 | n.2957A>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476616 | n.2959A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476628 | n.2971T>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476629 | n.2972C>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476630 | n.2973A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476633 | n.2976A>G | non_coding_transcript_exon_variant | 0.36 |
rpsA | 1833694 | c.153G>C | synonymous_variant | 0.2 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.27 |
rpsA | 1833732 | p.Pro64Leu | missense_variant | 0.2 |
rpsA | 1833736 | c.195C>T | synonymous_variant | 0.2 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.2 |
rpsA | 1833770 | p.Asn77Asp | missense_variant | 0.22 |
rpsA | 1833776 | p.Val79Ile | missense_variant | 0.2 |
rpsA | 1833781 | c.240T>C | synonymous_variant | 0.22 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.2 |
rpsA | 1833952 | c.411C>T | synonymous_variant | 0.2 |
rpsA | 1833955 | c.414G>C | synonymous_variant | 0.2 |
rpsA | 1833961 | c.420C>G | synonymous_variant | 0.2 |
rpsA | 1833994 | c.453G>C | synonymous_variant | 0.2 |
rpsA | 1834009 | c.468C>T | synonymous_variant | 0.22 |
rpsA | 1834012 | c.471G>C | synonymous_variant | 0.22 |
rpsA | 1834015 | c.474G>T | synonymous_variant | 0.22 |
rpsA | 1834024 | c.483G>C | synonymous_variant | 0.18 |
rpsA | 1834195 | c.654G>C | synonymous_variant | 0.36 |
rpsA | 1834213 | c.672G>C | synonymous_variant | 0.42 |
rpsA | 1834219 | c.678C>T | synonymous_variant | 0.45 |
rpsA | 1834225 | c.684C>T | synonymous_variant | 0.42 |
rpsA | 1834228 | c.687C>T | synonymous_variant | 0.31 |
rpsA | 1834231 | c.690T>C | synonymous_variant | 0.15 |
rpsA | 1834234 | c.693G>C | synonymous_variant | 0.69 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.64 |
rpsA | 1834246 | c.705G>T | synonymous_variant | 0.67 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.68 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.64 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.64 |
rpsA | 1834294 | c.753G>C | synonymous_variant | 0.53 |
rpsA | 1834298 | p.Gln253Glu | missense_variant | 0.53 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.5 |
rpsA | 1834307 | p.Asp256Gln | missense_variant | 0.5 |
rpsA | 1834327 | c.786G>T | synonymous_variant | 0.47 |
rpsA | 1834345 | c.804C>T | synonymous_variant | 0.25 |
rpsA | 1834451 | c.910_912delTTGinsCTC | synonymous_variant | 0.3 |
rpsA | 1834456 | c.915T>C | synonymous_variant | 0.3 |
rpsA | 1834459 | c.918G>C | synonymous_variant | 0.38 |
rpsA | 1834465 | c.924T>C | synonymous_variant | 0.38 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.38 |
rpsA | 1834486 | p.Glu315Asp | missense_variant | 0.5 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.29 |
rpsA | 1834501 | c.960G>C | synonymous_variant | 0.29 |
rpsA | 1834504 | c.963G>C | synonymous_variant | 0.29 |
rpsA | 1834522 | c.981C>T | synonymous_variant | 0.2 |
rpsA | 1834523 | p.Glu328Gln | missense_variant | 0.18 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2156336 | c.-225G>C | upstream_gene_variant | 0.15 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3065805 | c.387C>T | synonymous_variant | 1.0 |
clpC1 | 4039981 | p.Leu242Ile | missense_variant | 0.5 |
clpC1 | 4039982 | c.723G>C | synonymous_variant | 0.5 |
clpC1 | 4039994 | p.Glu237Asp | missense_variant | 0.67 |
clpC1 | 4040009 | c.696C>G | synonymous_variant | 0.54 |
clpC1 | 4040015 | c.690G>C | synonymous_variant | 0.54 |
clpC1 | 4040018 | c.687G>C | synonymous_variant | 0.5 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.47 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.47 |
clpC1 | 4040042 | c.663C>T | synonymous_variant | 0.47 |
clpC1 | 4040066 | c.639G>C | synonymous_variant | 0.46 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ethR | 4327854 | p.Met102Ile | missense_variant | 1.0 |
whiB6 | 4338593 | c.-72C>T | upstream_gene_variant | 0.18 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |