Rv0668 - c.360G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
17 Sensitive
25 RR-TB
15 HR-TB
20 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
58 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 4 |
| lineage4.8 | 9 |
| lineage3 | 10 |
| lineage4.9 | 30 |
| lineage3;lineage4 | 2 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.8.2 | 1 |
| lineage4.6.2.2 | 3 |
| lineage2.2.1 | 14 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1.2 | 1 |
| La2 | 1 |
| lineage1.1.1 | 1 |
| lineage4.4.2 | 1 |
| lineage3.1.1 | 2 |
| lineage4.3.2.1 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage4.3.2 | 1 |
| lineage4.1 | 1 |
| 4 | |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage3;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 2 |
| lineage4.4.1.1 | 3 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.8.1 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage4 | 1 |
| lineage1.2.2.2 | 1 |
| lineage5 | 1 |
| La1.3 | 1 |
| lineage4.3.3 | 3 |
| lineage2.2.1.1 | 1 |
| lineage4.6.1 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1.6 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage2.2.2 | 2 |
| lineage4.4.1.1.1 | 2 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 137 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR26112024 | Sensitive | lineage4.8 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR22528573 | Sensitive | lineage4.8 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | SRR1049672 | Other | lineage3 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR29055753 | Sensitive | lineage4.8 | None | SRR1173515 | Sensitive | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR13888750 | Other | La2 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6045555 | Other | lineage4.9 | None | SRR6044952 | Other | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | ERR4819307 | Other | lineage4.3.2 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR21676307 | Sensitive | lineage4.8 | None | ERR13261921 | HR-TB | lineage4.8 | None | ERR4815502 | Other | lineage4.1 | None | ERR502479 | RR-TB | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR6358991 | HR-TB | None | SRR16157123 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR9786444 | Sensitive | lineage4.8 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR4819011 | Other | lineage3.1.2.1 | None | SRR7535086 | Other | None | ERR4817584 | Other | lineage3;lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR4818128 | Other | lineage4.1.2.1 | None | ERR4820833 | Other | lineage3;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4817060 | Other | None | SRR1173770 | Other | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR1173281 | Other | lineage3 | None | ERR4816729 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR3283042 | Other | lineage4.9 | None | ERR4821214 | Other | lineage1.2.1.2.1 | None | ERR4820324 | Other | lineage4 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR4821143 | Other | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR4815225 | Other | lineage1.2.2.2 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | ERR4816967 | Other | lineage5 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4769436 | Other | La1.3 | None | ERR4815909 | Other | lineage4.8 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR4819096 | Other | lineage4.4.1.1 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | ERR4816470 | HR-TB | lineage3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6358755 | Other | lineage4.6.1 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR4821773 | Other | La1.6 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR4816667 | Other | lineage2.2.2 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR6046376 | Other | lineage3 | None | ERR1023509 | Other | lineage4.9 | None | SRR6046594 | Sensitive | lineage4.9 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR4818522 | Other | lineage3 | None | ERR176751 | Other | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | ERR4817069 | RR-TB | None | ERR867570 | RR-TB | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None |
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