TB-Profiler result

Run: ERR4819307
Summary

Run ID: ERR4819307

Sample name:

Date: 01-04-2023 16:02:19

Number of reads: 238803

Percentage reads mapped: 25.99

Strain: lineage4

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.5 rifampicin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.58 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5049 c.-191A>G upstream_gene_variant 0.22
gyrB 5872 c.633G>A synonymous_variant 0.33
gyrA 7625 c.324G>C synonymous_variant 0.67
gyrA 7628 c.327G>C synonymous_variant 0.67
gyrA 7631 c.330G>C synonymous_variant 0.67
gyrA 7633 p.Asp111Ala missense_variant 0.67
gyrA 7643 c.342C>T synonymous_variant 0.67
gyrA 9304 p.Gly668Asp missense_variant 1.0
mshA 576500 p.Ile385Leu missense_variant 0.25
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.5
rpoB 761096 c.1290G>C synonymous_variant 0.6
rpoB 761102 c.1296A>G synonymous_variant 0.6
rpoB 761132 c.1326G>C synonymous_variant 0.5
rpoB 761133 c.1327T>C synonymous_variant 0.5
rpoB 761534 c.1728G>C synonymous_variant 0.67
rpoB 761537 c.1731C>G synonymous_variant 0.67
rpoB 761557 p.Ala584Gly missense_variant 0.67
rpoB 761562 p.Ala586Ser missense_variant 0.67
rpoB 761565 p.Met587Leu missense_variant 0.67
rpoB 761570 c.1764T>C synonymous_variant 0.67
rpoB 761600 c.1794T>C synonymous_variant 0.75
rpoB 761800 p.Arg665Gln missense_variant 0.67
rpoB 762024 p.Val740Ile missense_variant 0.8
rpoB 762038 c.2232C>T synonymous_variant 0.33
rpoB 762051 p.His749Tyr missense_variant 0.83
rpoB 762057 p.Ile751Val missense_variant 0.83
rpoB 762062 c.2256T>C synonymous_variant 0.83
rpoB 762065 c.2259T>C synonymous_variant 0.83
rpoB 762071 p.Asp755Glu missense_variant 0.83
rpoB 762080 c.2274G>C synonymous_variant 0.83
rpoB 762085 p.Ala760Glu missense_variant 0.71
rpoB 762089 c.2283G>A synonymous_variant 0.71
rpoB 762092 c.2286G>A synonymous_variant 0.43
rpoB 762104 c.2298C>T synonymous_variant 0.43
rpoB 762110 c.2304G>C synonymous_variant 0.67
rpoB 762114 p.Ile770Val missense_variant 0.75
rpoB 762194 c.2388G>C synonymous_variant 0.67
rpoB 762200 c.2394C>T synonymous_variant 0.33
rpoB 762218 c.2412T>A synonymous_variant 0.6
rpoB 762233 c.2427G>C synonymous_variant 0.83
rpoB 762234 p.Pro810Ser missense_variant 0.83
rpoB 762239 c.2433G>A synonymous_variant 0.83
rpoB 762245 c.2439G>C synonymous_variant 0.83
rpoB 762248 c.2442G>A synonymous_variant 0.6
rpoB 762254 c.2448T>C synonymous_variant 0.67
rpoC 762929 c.-441G>T upstream_gene_variant 0.67
rpoC 762944 c.-426C>T upstream_gene_variant 0.5
rpoC 762962 c.-408C>T upstream_gene_variant 0.4
rpoB 763038 p.Thr1078Ala missense_variant 0.42
rpoC 763043 c.-327G>C upstream_gene_variant 0.45
rpoC 763053 c.-317T>C upstream_gene_variant 0.54
rpoC 763070 c.-300T>C upstream_gene_variant 0.56
rpoB 763077 p.Val1091Thr missense_variant 0.56
rpoC 763103 c.-267G>C upstream_gene_variant 0.44
rpoC 763115 c.-255T>C upstream_gene_variant 0.44
rpoB 763119 p.Asn1105Asp missense_variant 0.44
rpoC 763127 c.-243G>C upstream_gene_variant 0.5
rpoC 763133 c.-237G>C upstream_gene_variant 0.5
rpoC 763148 c.-222G>C upstream_gene_variant 0.38
rpoC 763615 c.246G>C synonymous_variant 0.5
rpoC 763622 p.Ala85Ser missense_variant 0.5
rpoC 763642 c.273G>C synonymous_variant 0.57
rpoC 763647 p.Gly93Ala missense_variant 0.3
rpoC 763654 c.285C>T synonymous_variant 0.18
rpoC 763655 p.Glu96Lys missense_variant 0.27
rpoC 763660 c.291T>G synonymous_variant 0.3
rpoC 763666 c.297G>C synonymous_variant 0.27
rpoC 763669 c.300C>G synonymous_variant 0.17
rpoC 763672 c.303C>G synonymous_variant 0.25
rpoC 763675 c.306C>G synonymous_variant 0.17
rpoC 763696 c.327T>C synonymous_variant 0.15
rpoC 763699 c.330G>T synonymous_variant 0.62
rpoC 763708 c.339G>C synonymous_variant 0.77
rpoC 763714 c.345G>C synonymous_variant 0.7
rpoC 763717 c.348T>C synonymous_variant 0.7
rpoC 763718 p.Leu117Val missense_variant 0.7
rpoC 763723 c.354G>C synonymous_variant 0.7
rpoC 763724 p.Asp119Asn missense_variant 0.7
rpoC 763729 c.360G>C synonymous_variant 0.7
rpoC 763732 c.363C>G synonymous_variant 0.7
rpoC 763735 c.366G>C synonymous_variant 0.7
rpoC 763744 c.375G>C synonymous_variant 0.64
rpoC 763751 p.Ile128Val missense_variant 0.7
rpoC 763772 p.Val135Met missense_variant 0.5
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.25
rpoC 764410 c.1041G>C synonymous_variant 0.25
rpoC 764424 p.Asn352Thr missense_variant 0.5
rpoC 764428 c.1059G>A synonymous_variant 1.0
rpoC 764431 c.1062G>C synonymous_variant 1.0
rpoC 764434 c.1065A>G synonymous_variant 1.0
rpoC 764435 c.1066_1068delAGGinsCGC synonymous_variant 1.0
rpoC 764441 p.Ile358Leu missense_variant 0.67
rpoC 764446 p.Asp359Glu missense_variant 0.67
rpoC 764455 c.1086G>C synonymous_variant 0.67
rpoC 764458 c.1089G>C synonymous_variant 0.67
rpoC 764461 c.1092A>G synonymous_variant 0.8
rpoC 764485 c.1116G>C synonymous_variant 0.67
rpoC 764491 c.1122G>T synonymous_variant 0.57
rpoC 764497 c.1128A>G synonymous_variant 0.4
rpoC 764503 c.1134G>T synonymous_variant 0.4
rpoC 764509 c.1140G>C synonymous_variant 0.4
rpoC 764512 c.1143G>C synonymous_variant 0.4
rpoC 764521 c.1152T>C synonymous_variant 0.4
rpoC 764536 c.1167G>C synonymous_variant 0.4
rpoC 764647 c.1278C>T synonymous_variant 0.4
rpoC 764650 c.1281G>T synonymous_variant 0.5
rpoC 764653 c.1284G>C synonymous_variant 0.5
rpoC 764656 c.1287C>T synonymous_variant 0.5
rpoC 764662 c.1293G>C synonymous_variant 0.5
rpoC 764677 c.1308C>G synonymous_variant 0.5
rpoC 764678 p.Lys437Gln missense_variant 0.5
rpoC 764692 c.1323C>T synonymous_variant 0.67
rpoC 764706 p.Leu446Gln missense_variant 0.4
rpoC 764713 c.1344G>C synonymous_variant 0.4
rpoC 764995 c.1626C>G synonymous_variant 1.0
rpoC 766985 p.Val1206Met missense_variant 0.5
rpoC 767020 c.3651C>G synonymous_variant 0.67
rpoC 767023 c.3654C>T synonymous_variant 0.67
rpoC 767038 c.3669G>C synonymous_variant 0.8
rpoC 767044 c.3675G>C synonymous_variant 0.8
rpoC 767263 c.3894T>C synonymous_variant 0.25
mmpL5 776126 c.2355C>T synonymous_variant 0.67
mmpL5 777525 p.Gly319Val missense_variant 0.29
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781754 c.195G>C synonymous_variant 0.75
rpsL 781760 c.201T>C synonymous_variant 0.75
rpsL 781766 c.207C>T synonymous_variant 0.5
rpsL 781769 c.210G>A synonymous_variant 0.33
rpsL 781781 c.222G>C synonymous_variant 0.33
rpsL 781796 p.Met79Ile missense_variant 0.57
rpsL 781802 c.243G>C synonymous_variant 0.67
rpsL 781811 c.252C>T synonymous_variant 0.57
rpsL 781814 c.255C>T synonymous_variant 0.57
rpsL 781817 c.258G>T synonymous_variant 0.57
rpsL 781832 c.273T>C synonymous_variant 0.5
fbiC 1303685 p.Ser252Phe missense_variant 0.29
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.22
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.81
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.55
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.65
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.68
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.16
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.16
rrs 1472130 n.285G>A non_coding_transcript_exon_variant 0.15
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.16
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.17
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.63
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.51
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.47
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.52
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.96
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.47
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.53
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.75
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.67
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.67
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 1.0
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.67
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.67
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.85
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.79
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.77
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.82
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.54
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.62
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.31
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 1.0
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.2
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.7
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.7
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.58
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.55
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 1.0
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.29
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.71
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.29
rrs 1472670 n.825G>T non_coding_transcript_exon_variant 0.33
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.21
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.24
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.6
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.4
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.56
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.57
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.57
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.55
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.42
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.57
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.55
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 1.0
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.35
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.43
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472840 n.995A>G non_coding_transcript_exon_variant 1.0
rrs 1472875 n.1030T>C non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.25
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.62
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.29
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.98
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.91
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.97
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.96
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.23
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.23
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.98
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.6
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.58
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.97
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.93
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 1.0
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.97
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.53
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.5
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.97
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 1.0
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.96
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.88
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.38
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.85
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.65
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.65
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.99
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.96
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.71
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.71
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.71
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.97
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.97
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 1.0
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.96
rrs 1473291 n.1446G>C non_coding_transcript_exon_variant 1.0
rrs 1473294 n.1449A>G non_coding_transcript_exon_variant 0.95
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.95
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 1.0
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.93
rrl 1473384 n.-274A>G upstream_gene_variant 0.43
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 1.0
rrl 1473922 n.265A>G non_coding_transcript_exon_variant 1.0
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 1.0
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.82
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.77
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 1.0
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.91
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.91
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.22
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.76
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 0.38
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474393 n.736A>G non_coding_transcript_exon_variant 1.0
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 1.0
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 1.0
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.67
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.4
rrl 1474584 n.927C>T non_coding_transcript_exon_variant 0.33
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.67
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 1.0
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.67
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.67
rrl 1474881 n.1224A>G non_coding_transcript_exon_variant 0.33
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 1.0
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 1.0
rrl 1475109 n.1452C>T non_coding_transcript_exon_variant 0.6
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 1.0
rrl 1475137 n.1480A>T non_coding_transcript_exon_variant 0.6
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 1.0
rrl 1475172 n.1515A>G non_coding_transcript_exon_variant 0.4
rrl 1475175 n.1518G>C non_coding_transcript_exon_variant 0.6
rrl 1475188 n.1531C>G non_coding_transcript_exon_variant 0.6
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 1.0
rrl 1475879 n.2222T>C non_coding_transcript_exon_variant 0.12
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.31
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 1.0
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.62
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.6
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 1.0
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.8
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.6
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.6
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.8
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 1.0
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.67
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.93
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.67
rrl 1476229 n.2572C>G non_coding_transcript_exon_variant 0.8
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.91
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.7
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.96
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.73
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 1.0
rrl 1476326 n.2669T>C non_coding_transcript_exon_variant 0.12
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.13
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.94
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.93
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.88
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.69
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.83
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.89
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.86
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.78
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.83
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.6
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 1.0
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.8
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.4
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.4
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 1.0
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.4
rrl 1476542 n.2885T>C non_coding_transcript_exon_variant 0.4
rrl 1476548 n.2891T>C non_coding_transcript_exon_variant 0.4
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.4
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 1.0
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rpsA 1833676 c.135A>G synonymous_variant 0.22
rpsA 1833679 c.138G>C synonymous_variant 0.22
rpsA 1833684 p.Arg48Gln missense_variant 0.22
rpsA 1833694 c.153G>C synonymous_variant 0.33
rpsA 1833721 c.180A>G synonymous_variant 0.4
rpsA 1833727 c.186G>C synonymous_variant 0.5
rpsA 1833732 p.Pro64Leu missense_variant 0.5
rpsA 1833734 p.Ala65Ser missense_variant 0.5
rpsA 1833742 c.201A>G synonymous_variant 0.5
rpsA 1833764 p.Asp75Asn missense_variant 0.67
rpsA 1834216 c.675C>T synonymous_variant 0.4
rpsA 1834228 c.687C>T synonymous_variant 0.67
rpsA 1834234 c.693G>C synonymous_variant 0.67
rpsA 1834240 c.699T>C synonymous_variant 0.5
rpsA 1834246 c.705G>T synonymous_variant 0.5
rpsA 1834249 c.708T>C synonymous_variant 0.57
rpsA 1834261 c.720A>G synonymous_variant 0.7
rpsA 1834264 c.723G>C synonymous_variant 0.7
rpsA 1834294 c.753G>T synonymous_variant 0.44
rpsA 1834298 p.Gln253Glu missense_variant 0.44
rpsA 1834303 c.762T>C synonymous_variant 0.5
rpsA 1834306 c.765T>C synonymous_variant 0.57
rpsA 1834307 p.Asp256Gln missense_variant 0.57
rpsA 1834312 c.771G>A synonymous_variant 0.57
rpsA 1834327 c.786G>T synonymous_variant 0.5
rpsA 1834345 c.804C>T synonymous_variant 0.44
rpsA 1834348 c.807T>C synonymous_variant 0.38
katG 2154145 p.Asp656Gly missense_variant 0.22
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
ribD 2987487 p.Pro217Thr missense_variant 0.18
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3449581 p.Val360Met missense_variant 0.2
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
whiB7 3568464 p.Asp72Glu missense_variant 0.25
Rv3236c 3612805 c.312T>A synonymous_variant 0.17
fbiA 3640453 c.-90C>T upstream_gene_variant 0.67
fbiB 3642054 p.Arg174Cys missense_variant 0.4
clpC1 4038287 c.2418C>T synonymous_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4249147 c.2634C>T synonymous_variant 0.2
embB 4249387 c.2874G>A synonymous_variant 0.5
aftB 4269618 c.-782C>T upstream_gene_variant 0.29
ethA 4326266 p.Cys403Tyr missense_variant 0.22
ethA 4327518 c.-45G>A upstream_gene_variant 0.5
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407547 p.Ala219Val missense_variant 0.25
gid 4408024 p.Glu60Gly missense_variant 0.2
gid 4408156 p.Leu16Arg missense_variant 1.0