Rv0668 - c.330G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
96 Sensitive
16 RR-TB
17 HR-TB
19 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
80 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1 | 1 |
| lineage4.9 | 102 |
| lineage3 | 12 |
| lineage4.1.1.3.1 | 1 |
| lineage4.1.2.1 | 7 |
| lineage1.2.1.2.1 | 1 |
| lineage4.3.4.2.1 | 3 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.5 | 2 |
| lineage4.8 | 5 |
| lineage4.3.2 | 1 |
| lineage2.2.1 | 10 |
| lineage4.4.1.1 | 5 |
| lineage5 | 1 |
| lineage4 | 7 |
| lineage4.3.3 | 5 |
| lineage4.1.3 | 1 |
| lineage2.2.1.1 | 3 |
| lineage4.1.1.2 | 1 |
| lineage1 | 1 |
| lineage4.3.2.1 | 4 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.3.4.2 | 3 |
| lineage4.2.1 | 2 |
| lineage4.3.3;lineage4.9 | 2 |
| lineage4.2.2.2 | 1 |
| La1.7.1 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| 3 | |
| lineage2.2.1;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.6.5 | 2 |
| lineage2.2.2 | 3 |
| lineage4.1.1.1 | 3 |
| lineage4.6.2.2 | 2 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.1.1.3 | 4 |
| lineage3.1.2.1 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.3 | 1 |
| La1.8.1 | 1 |
| La1;lineage4.9 | 2 |
| lineage1.1.3.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.1.2 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage5.1.4 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage3;lineage4 | 1 |
| La1.3 | 1 |
| lineage4.1 | 1 |
| lineage1.1.2 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.8.1 | 1 |
| lineage3;lineage4.9 | 2 |
| lineage4.3.4.2;lineage4.7 | 1 |
| lineage5.1.1 | 1 |
| lineage1.1.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 237 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4831997 | MDR-TB | lineage2.1 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | SRR6044952 | Other | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4821214 | Other | lineage1.2.1.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR7070223 | HR-TB | lineage3 | None | ERR369158 | Other | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | ERR4814878 | Sensitive | lineage4.8 | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR11342669 | Other | lineage4.8 | None | ERR4819307 | Other | lineage4.3.2 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR13285068 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR1049672 | Other | lineage3 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4816967 | Other | lineage5 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR4819096 | Other | lineage4.4.1.1 | None | ERR4821334 | Other | lineage4.1.3 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4815709 | Sensitive | lineage4.1.2.1 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4818126 | Other | lineage1 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR2512606 | HR-TB | lineage3 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR4820030 | Other | lineage4.9 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR4812155 | Other | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR10796598 | Other | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR4817069 | RR-TB | None | SRR1173770 | Other | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | ERR4820324 | Other | lineage4 | None | ERR369162 | Other | lineage4.9 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR4816425 | Other | lineage2.2.2 | None | SRR16156817 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR4815909 | Other | lineage4.8 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | ERR349299 | Other | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR11444077 | Sensitive | lineage4.6.2.2 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR4816667 | Other | lineage2.2.2 | None | ERR349298 | Sensitive | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | ERR5311077 | Other | La1.8.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769493 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR7070571 | Sensitive | lineage3 | None | SRR3675247 | Other | lineage4.9 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR4818128 | Other | lineage4.1.2.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR4815556 | RR-TB | lineage3 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR4817060 | Other | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | ERR2517475 | Other | lineage4 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1140716 | Other | lineage3 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR369151 | Other | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1173587 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4815225 | Other | lineage1.2.2.2 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR1173515 | Sensitive | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR4815502 | Other | lineage4.1 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR2446382 | Other | lineage4 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR3675260 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR11342646 | HR-TB | lineage3 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | ERR4817584 | Other | lineage3;lineage4.9 | None | ERR6197021 | MDR-TB | lineage4.3.4.2;lineage4.7 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4820833 | Other | lineage3;lineage4.9 | None | ERR502517 | Other | lineage5.1.1 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR2509886 | Other | lineage3 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None |
|---|
