Run ID: ERR4769495
Sample name:
Date: 01-04-2023 06:42:46
Number of reads: 1598053
Percentage reads mapped: 78.96
Strain: La1.3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.3 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.31 | streptomycin |
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.13 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.11 |
rpoC | 763534 | c.165T>C | synonymous_variant | 0.12 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.12 |
rpoC | 763551 | p.Tyr61Ser | missense_variant | 0.14 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.17 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.17 |
rpoC | 763630 | c.261G>C | synonymous_variant | 0.2 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.21 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.2 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.19 |
rpoC | 763669 | c.300C>G | synonymous_variant | 0.18 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.16 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.14 |
rpoC | 763699 | c.330G>T | synonymous_variant | 0.12 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.14 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.19 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.21 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.25 |
rpoC | 764605 | c.1236G>C | synonymous_variant | 0.23 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.23 |
rpoC | 764623 | c.1254C>G | synonymous_variant | 0.23 |
rpoC | 764632 | c.1263T>A | synonymous_variant | 0.22 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.15 |
rpoC | 764660 | p.Val431Ile | missense_variant | 0.16 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 0.16 |
rpoC | 766345 | c.2976T>C | synonymous_variant | 0.12 |
rpoC | 766369 | c.3000C>G | synonymous_variant | 0.12 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471918 | n.73A>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1471923 | n.78T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1471925 | n.80T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1471932 | n.87A>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1471934 | n.89A>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1471938 | n.93T>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1471972 | n.127T>C | non_coding_transcript_exon_variant | 0.34 |
rrs | 1471979 | n.134T>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472028 | n.183A>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472054 | n.210_212delCGC | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472061 | n.216A>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472062 | n.217G>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472123 | n.278A>G | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472150 | n.305T>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472225 | n.380C>G | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472278 | n.433C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472279 | n.434T>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472299 | n.455_462delCCGGGTTC | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472309 | n.464C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472311 | n.467_470delGGAT | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472325 | n.480G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472439 | n.594C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472447 | n.602C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472448 | n.603T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472450 | n.605A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472451 | n.606C>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472461 | n.616G>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472462 | n.617T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472471 | n.626G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472682 | n.837T>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472683 | n.838T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472685 | n.840G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472686 | n.841G>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472690 | n.845C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472837 | n.992C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472840 | n.995A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472857 | n.1012A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472858 | n.1013G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472860 | n.1015C>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472861 | n.1016G>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472874 | n.1029C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472875 | n.1030T>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472878 | n.1033G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472880 | n.1035G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472993 | n.1148G>A | non_coding_transcript_exon_variant | 0.34 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.45 |
rrs | 1473089 | n.1244A>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473115 | n.1270G>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473283 | n.1438T>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473290 | n.1445C>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473293 | n.1449delA | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474135 | n.478G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474174 | n.517A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474200 | n.545delT | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474487 | n.830G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474495 | n.838G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474496 | n.839C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474497 | n.840G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474506 | n.849C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474507 | n.850G>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474508 | n.851C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474517 | n.860C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474552 | n.895C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474734 | n.1077G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474749 | n.1092C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474753 | n.1097delC | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474798 | n.1141C>G | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474801 | n.1144G>A | non_coding_transcript_exon_variant | 0.34 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474825 | n.1168G>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474901 | n.1244A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474903 | n.1246T>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474921 | n.1264C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474934 | n.1277C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475696 | n.2039T>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475698 | n.2041_2042insA | non_coding_transcript_exon_variant | 0.31 |
rrl | 1475703 | n.2046A>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475753 | n.2096C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1475758 | n.2101A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475759 | n.2102C>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475768 | n.2111G>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475769 | n.2112T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.37 |
rrl | 1475902 | n.2245T>C | non_coding_transcript_exon_variant | 0.37 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.39 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1475997 | n.2340A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476035 | n.2378G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476087 | n.2430C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476099 | n.2442A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476100 | n.2443A>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476103 | n.2446C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476105 | n.2450delA | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476110 | n.2453G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476113 | n.2456T>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476116 | n.2459A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476267 | n.2610G>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476276 | n.2619C>A | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476297 | n.2640C>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476298 | n.2641C>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476300 | n.2643G>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476309 | n.2652G>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476523 | n.2867delC | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476728 | n.3071T>C | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 0.13 |
rpsA | 1833829 | c.288A>G | synonymous_variant | 0.14 |
rpsA | 1833832 | c.291G>A | synonymous_variant | 0.14 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.15 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.16 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.17 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.18 |
rpsA | 1833862 | c.321G>C | synonymous_variant | 0.19 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.21 |
rpsA | 1833894 | p.Ala118Asp | missense_variant | 0.2 |
rpsA | 1833914 | p.Ala125Pro | missense_variant | 0.19 |
rpsA | 1833921 | p.Lys127Thr | missense_variant | 0.2 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.21 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.16 |
rpsA | 1833961 | c.420C>G | synonymous_variant | 0.15 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.17 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.21 |
rpsA | 1833988 | c.447C>G | synonymous_variant | 0.19 |
rpsA | 1833991 | c.450C>G | synonymous_variant | 0.18 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.19 |
rpsA | 1834012 | c.471G>C | synonymous_variant | 0.19 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.19 |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.18 |
rpsA | 1834040 | p.Lys167Gln | missense_variant | 0.18 |
rpsA | 1834054 | c.513C>G | synonymous_variant | 0.18 |
rpsA | 1834093 | c.552G>C | synonymous_variant | 0.15 |
rpsA | 1834102 | c.561T>C | synonymous_variant | 0.13 |
rpsA | 1834108 | c.567C>G | synonymous_variant | 0.12 |
rpsA | 1834303 | c.762T>C | synonymous_variant | 0.16 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.14 |
rpsA | 1834327 | c.786G>T | synonymous_variant | 0.13 |
rpsA | 1834333 | p.Asp264Glu | missense_variant | 0.13 |
rpsA | 1834340 | p.Met267Leu | missense_variant | 0.15 |
rpsA | 1834343 | p.Asp268Asn | missense_variant | 0.15 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.13 |
rpsA | 1834354 | c.813G>C | synonymous_variant | 0.12 |
rpsA | 1834357 | c.816T>C | synonymous_variant | 0.12 |
rpsA | 1834360 | c.819G>C | synonymous_variant | 0.12 |
rpsA | 1834361 | c.820T>C | synonymous_variant | 0.12 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.14 |
rpsA | 1834369 | c.828C>G | synonymous_variant | 0.14 |
rpsA | 1834378 | c.837T>C | synonymous_variant | 0.13 |
rpsA | 1834384 | c.843A>G | synonymous_variant | 0.14 |
rpsA | 1834396 | c.855G>C | synonymous_variant | 0.12 |
rpsA | 1834397 | p.His286Val | missense_variant | 0.12 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.12 |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.14 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.14 |
rpsA | 1834432 | c.891G>C | synonymous_variant | 0.16 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.14 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.15 |
rpsA | 1834504 | c.963G>C | synonymous_variant | 0.12 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.16 |
rpsA | 1834534 | c.993C>G | synonymous_variant | 0.16 |
rpsA | 1834537 | p.Glu332Asp | missense_variant | 0.16 |
rpsA | 1834543 | c.1002C>G | synonymous_variant | 0.15 |
rpsA | 1834550 | p.Val337Ile | missense_variant | 0.15 |
rpsA | 1834555 | c.1014T>C | synonymous_variant | 0.15 |
rpsA | 1834556 | p.Ala339Thr | missense_variant | 0.15 |
rpsA | 1834567 | p.Asp342Glu | missense_variant | 0.13 |
rpsA | 1834570 | p.Asp343Glu | missense_variant | 0.13 |
rpsA | 1834573 | c.1032G>C | synonymous_variant | 0.13 |
rpsA | 1834603 | p.Glu354Asp | missense_variant | 0.16 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.12 |
rpsA | 1834612 | c.1071G>C | synonymous_variant | 0.12 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 0.98 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
katG | 2156465 | c.-354C>T | upstream_gene_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 0.98 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 0.98 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
rpoA | 3878630 | c.-124delC | upstream_gene_variant | 1.0 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
clpC1 | 4038791 | c.1914G>C | synonymous_variant | 0.14 |
clpC1 | 4038794 | p.Ser637Thr | missense_variant | 0.14 |
clpC1 | 4038811 | p.Gln632Lys | missense_variant | 0.2 |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.2 |
clpC1 | 4038815 | c.1890G>C | synonymous_variant | 0.2 |
clpC1 | 4038842 | c.1863G>C | synonymous_variant | 0.18 |
clpC1 | 4038845 | c.1860G>C | synonymous_variant | 0.18 |
clpC1 | 4038860 | c.1845G>C | synonymous_variant | 0.21 |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.19 |
clpC1 | 4038905 | c.1800A>C | synonymous_variant | 0.15 |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.16 |
clpC1 | 4038911 | c.1794G>T | synonymous_variant | 0.16 |
clpC1 | 4038914 | c.1791G>C | synonymous_variant | 0.15 |
clpC1 | 4038917 | c.1788C>T | synonymous_variant | 0.15 |
clpC1 | 4038923 | c.1782A>G | synonymous_variant | 0.17 |
clpC1 | 4038926 | c.1779G>C | synonymous_variant | 0.17 |
clpC1 | 4038932 | c.1773G>C | synonymous_variant | 0.17 |
clpC1 | 4038941 | c.1764G>C | synonymous_variant | 0.19 |
clpC1 | 4038953 | c.1752A>G | synonymous_variant | 0.16 |
clpC1 | 4038956 | c.1749T>C | synonymous_variant | 0.15 |
clpC1 | 4038965 | c.1740T>C | synonymous_variant | 0.15 |
clpC1 | 4038971 | c.1734T>C | synonymous_variant | 0.15 |
clpC1 | 4038974 | c.1731T>C | synonymous_variant | 0.13 |
clpC1 | 4038980 | c.1725C>T | synonymous_variant | 0.13 |
clpC1 | 4038983 | p.Asp574Glu | missense_variant | 0.12 |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.12 |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.11 |
clpC1 | 4039748 | c.957G>C | synonymous_variant | 0.13 |
clpC1 | 4039751 | c.954A>G | synonymous_variant | 0.15 |
clpC1 | 4039757 | c.948A>G | synonymous_variant | 0.15 |
clpC1 | 4039760 | c.945T>C | synonymous_variant | 0.15 |
clpC1 | 4039766 | c.939T>C | synonymous_variant | 0.16 |
clpC1 | 4039769 | c.936C>G | synonymous_variant | 0.16 |
clpC1 | 4039778 | c.927A>G | synonymous_variant | 0.2 |
clpC1 | 4039790 | c.915C>G | synonymous_variant | 0.21 |
clpC1 | 4039817 | c.888A>T | synonymous_variant | 0.2 |
clpC1 | 4039820 | c.885T>G | synonymous_variant | 0.2 |
clpC1 | 4039823 | c.882T>C | synonymous_variant | 0.2 |
clpC1 | 4039829 | c.874_876delTTGinsCTC | synonymous_variant | 0.2 |
clpC1 | 4039838 | p.Leu289Ile | missense_variant | 0.2 |
clpC1 | 4039850 | c.855T>C | synonymous_variant | 0.24 |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 0.22 |
clpC1 | 4039871 | p.Thr278Gln | missense_variant | 0.18 |
clpC1 | 4039898 | c.807C>G | synonymous_variant | 0.14 |
clpC1 | 4039904 | c.801A>G | synonymous_variant | 0.12 |
clpC1 | 4039916 | c.789T>C | synonymous_variant | 0.11 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4241384 | p.Pro508Thr | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4249640 | c.3127T>C | synonymous_variant | 0.98 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |