Rv3596c - c.888A>T
Drug resistance types
68 Sensitive
35 RR-TB
145 HR-TB
33 MDR-TB
19 Pre-XDR-TB
0 XDR-TB
106 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 73 |
| lineage4 | 75 |
| lineage2.2.1.1 | 7 |
| lineage2.2.1 | 32 |
| 122 | |
| lineage4.5 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.4 | 1 |
| La1.4 | 1 |
| La1.8.1 | 5 |
| La1.7.1 | 1 |
| lineage2.2.2 | 1 |
| lineage4.4.2 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage3.1.3 | 1 |
| lineage4.8 | 8 |
| lineage4.1 | 2 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage2.1 | 1 |
| lineage3 | 13 |
| lineage4;lineage2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.6.1.2 | 5 |
| lineage4;lineage1.1.2 | 1 |
| lineage6 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.4.1.1 | 2 |
| lineage1.1.1 | 1 |
| lineage4.3.3 | 3 |
| lineage1.1.2 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.1.3 | 1 |
| lineage4.1.2.1 | 5 |
| lineage1.1 | 1 |
| lineage4.6.2.2 | 3 |
| La2 | 1 |
| lineage3.1 | 2 |
| lineage4.3 | 1 |
| lineage4.1.2 | 2 |
| lineage4.7 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.2 | 2 |
| La1 | 1 |
| lineage6.1.1 | 2 |
| lineage4;lineage3.1 | 1 |
| La1.3 | 2 |
| lineage4.9;La1.3 | 1 |
| lineage3.1.2 | 1 |
| lineage4.3.4 | 1 |
| lineage4.3.2 | 1 |
| lineage4.6.5 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage6.1.3 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4.8;lineage4.3.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 406 |
Geographic prevalence
Country level data for this variant is available for 6 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1174897 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861666 | Sensitive | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861324 | Other | lineage4.9 | None | SRR13861636 | Sensitive | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR16278274 | Other | La1.4 | None | SRR1640750 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR20632814 | Sensitive | lineage4 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR8692822 | Other | lineage4.9 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692905 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR8692800 | Other | lineage4 | None | ERR176778 | HR-TB | None | SRR3675488 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675482 | HR-TB | None | ERR4815777 | Other | lineage4.9 | None | ERR176779 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675234 | Other | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR4814639 | HR-TB | lineage4 | None | ERR4815471 | Other | lineage4.9 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675486 | HR-TB | None | SRR3675222 | Other | None | ERR181824 | HR-TB | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | ERR4815556 | RR-TB | lineage3 | None | ERR176651 | HR-TB | None | SRR3675501 | HR-TB | None | ERR181887 | HR-TB | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4816964 | Other | lineage4.9 | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | ERR4815079 | RR-TB | lineage3 | None | SRR3675545 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | SRR3675558 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | SRR3675574 | HR-TB | None | ERR4816470 | Other | lineage3 | None | ERR4817069 | RR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR2432997 | Other | lineage4.8 | None | ERR4818787 | MDR-TB | lineage6 | None | ERR4818086 | Sensitive | lineage4.8 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2513259 | Other | lineage3 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4818561 | HR-TB | lineage4 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | SRR5341366 | Sensitive | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341432 | HR-TB | lineage4 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR2514692 | Other | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR5341455 | Sensitive | lineage4 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR5341303 | RR-TB | lineage4 | None | ERR1023509 | Other | None | ERR2514821 | Other | lineage2.2.1 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341330 | HR-TB | None | ERR2693232 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | SRR5341456 | Other | None | ERR4821057 | HR-TB | lineage4 | None | SRR5341469 | Other | lineage4 | None | SRR5341470 | HR-TB | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693231 | Other | None | ERR2693257 | Other | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693239 | HR-TB | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR4821053 | Other | lineage3 | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR6045526 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821214 | RR-TB | None | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044838 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6046152 | Other | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045399 | Other | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6045327 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046362 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR278594 | HR-TB | None | SRR6046397 | Other | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046492 | Other | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4830353 | Other | None | SRR6325444 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325448 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046514 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046839 | Other | lineage4.9 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6511621 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR323036 | HR-TB | None | ERR502470 | RR-TB | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR502472 | Other | lineage4.6.2.2 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR4831117 | HR-TB | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR502510 | Sensitive | lineage4 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR294248 | HR-TB | None | ERR294266 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311090 | HR-TB | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR7496471 | Sensitive | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7496523 | Other | lineage4.7 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR323039 | HR-TB | None | ERR323038 | HR-TB | None | ERR323041 | HR-TB | None | ERR323107 | Other | lineage4 | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323045 | HR-TB | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR323053 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323066 | Sensitive | lineage4 | None | ERR323063 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR323085 | Sensitive | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1063855 | Other | lineage4 | None | ERR1063858 | HR-TB | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1063859 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR133825 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283014 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283028 | Other | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283058 | Other | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445504 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797016 | HR-TB | None | ERR3797017 | Other | None | ERR3445503 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797014 | Other | None | ERR3797043 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797044 | Other | None | ERR3797048 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797061 | Other | None | ERR3797063 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3797086 | Other | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3797087 | Sensitive | lineage4 | None | ERR4596902 | HR-TB | lineage3 | None | ERR4024991 | Other | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4188247 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4796577 | MDR-TB | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797264 | Sensitive | None | ERR4797184 | Sensitive | lineage4 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4798504 | Other | lineage3 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR6197024 | RR-TB | lineage4.9 | None | ERR4811493 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358991 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR6358979 | Other | None | ERR6359066 | HR-TB | lineage4 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6866022 | Other | None | ERR6866410 | Sensitive | None | ERR702404 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR6866639 | Other | None | ERR736839 | Other | None | ERR736837 | Other | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR736848 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR751326 | Sensitive | lineage4 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR8976043 | HR-TB | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR10808805 | Sensitive | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR11462861 | Other | La1.8.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1173281 | RR-TB | lineage3 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1173185 | HR-TB | lineage4.9 | None |
|---|
