EBG00000313339 - n.2643G>T
Drug resistance types
11 Sensitive
30 RR-TB
19 HR-TB
48 MDR-TB
28 Pre-XDR-TB
1 XDR-TB
142 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 66 |
| lineage4.8.1 | 1 |
| lineage4.3.3;lineage4.8 | 3 |
| lineage4.9 | 51 |
| lineage4.1.2.1 | 10 |
| lineage1.1.3.1 | 2 |
| lineage4.1.2;lineage4.9 | 1 |
| lineage2.2.2 | 6 |
| lineage4.4.2 | 5 |
| lineage2.2;lineage4 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.3.4.2 | 3 |
| lineage3 | 12 |
| lineage3.1.1 | 4 |
| lineage4.1.1.3 | 8 |
| lineage4.1.1.2 | 2 |
| lineage4 | 2 |
| lineage4.5 | 2 |
| lineage1.2.1.2 | 1 |
| La1.3 | 2 |
| lineage4.8 | 9 |
| lineage4.7 | 4 |
| lineage4.3.2 | 1 |
| lineage4.2.1 | 6 |
| lineage1.1.2;lineage6.2.3 | 1 |
| lineage4.3.3 | 9 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
| lineage1.2.1.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.4.1.1 | 11 |
| La1.8.1 | 12 |
| lineage3.1.2.1 | 1 |
| lineage4.2.2.2 | 4 |
| lineage4.1.1.1 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4.2.1.1 | 2 |
| lineage4.2.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.1.4 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage1.1.1.1 | 1 |
| lineage2.2.1.1 | 3 |
| La1.4 | 1 |
| La1.7.1 | 2 |
| lineage4.3.4.1 | 4 |
| lineage4.6.2.2 | 1 |
| lineage4.1.2 | 1 |
| lineage4.1.3 | 1 |
| La2 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.4.2;lineage4.7 | 2 |
| La1.2 | 2 |
| lineage1.1.1 | 2 |
| lineage4.3 | 1 |
| lineage4.1.1.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 279 |
Geographic prevalence
Country level data for this variant is available for 11 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | SRR22048550 | Other | lineage1.1.3.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR6982246 | RR-TB | lineage4.1.2;lineage4.9 | None | SRR18002974 | Other | lineage2.2.1 | None | DRR184903 | Sensitive | lineage2.2.2 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR1140724 | Other | lineage2.2.1 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR6197041 | MDR-TB | lineage4.3.4.2 | None | ERR2446509 | Other | lineage3 | nl | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR8975044 | Other | lineage4.1.1.2 | None | ERR10796571 | Other | lineage4.9 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SRR5818423 | RR-TB | lineage4.9 | None | ERR4811708 | HR-TB | lineage4 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR6197043 | MDR-TB | lineage4.3.4.2 | None | SRR6824501 | Pre-XDR-TB | lineage2.2.1 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR5818386 | Other | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | SRR7069835 | Other | lineage2.2.1 | None | ERR10796591 | Other | lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR12420628 | MDR-TB | lineage2.2.1 | None | ERR3275190 | Other | lineage3 | nl | ERR10796596 | Other | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR1163055 | MDR-TB | lineage4.8 | None | ERR6197035 | Sensitive | lineage4.7 | None | ERR4820193 | Other | lineage3 | None | SRR19303907 | Other | lineage4.8 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR4818272 | Other | lineage4.3.2 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR3675509 | Other | lineage4.9 | None | SRR5818425 | Other | lineage4.9 | None | SRR5818385 | Other | lineage4.9 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | SRR13423546 | Other | lineage4.4.2 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | ERR10796598 | Other | lineage4.9 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | ERR6197029 | Other | lineage4.7 | None | SRR7069766 | Other | lineage4.1.2.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR14801720 | Other | lineage4.8 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR1023509 | MDR-TB | lineage4.9 | None | SRR18002876 | MDR-TB | lineage2.2.1;lineage2.2.2 | None | ERR4817915 | Other | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | SRR22424765 | HR-TB | lineage4.8 | None | ERR2514215 | Other | lineage2.2.1 | gb | SRR10315558 | RR-TB | lineage2.2.1 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR7069922 | Other | lineage2.2.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR5818395 | Sensitive | lineage4.9 | None | SRR7070134 | Other | lineage3.1.1 | None | ERR4769493 | Other | lineage4.9 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818462 | Other | lineage4.9 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR21240055 | Other | lineage4.1.2.1 | None | ERR6865446 | Other | lineage4.4.1.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR4586795 | Other | La1.8.1 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR7617847 | Other | La1.8.1 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR176741 | Other | lineage4.9 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR16058249 | Sensitive | lineage4.2.2.2 | None | ERR10796620 | Other | lineage4.1.1.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR4817434 | Other | lineage3 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR5163959 | Other | lineage4.9 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR4816868 | Other | lineage4.4.1.1 | None | SRR6045002 | RR-TB | lineage4.9 | None | ERR5087596 | Other | La1.8.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR6930920 | Sensitive | lineage4.2.1.1 | None | SRR6046250 | Other | lineage4.9 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR19304104 | Other | lineage4.8 | None | ERR5087846 | Other | La1.8.1 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR4812328 | Other | lineage4.3.3 | pe | ERR4820723 | Other | lineage4.4.1.1 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR4814994 | HR-TB | lineage2.2.1 | gb | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818460 | Other | lineage4.9 | None | SRR11342646 | HR-TB | lineage3 | None | ERR4769436 | Other | La1.3 | None | ERR5979407 | Other | lineage3 | None | SRR5153833 | Other | lineage2.2.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR4816417 | Other | lineage4.9 | None | DRR184982 | Other | lineage2.2.1 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR1184308 | RR-TB | lineage4.9 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | SRR13180370 | Other | lineage4.1.4 | None | ERR8665619 | Pre-XDR-TB | lineage2.2.1 | None | SRR7236399 | Other | La1.8.1 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | DRR185000 | Other | lineage1.1.1.1 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR5818408 | Other | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR7070154 | Other | lineage4.4.1.1 | None | ERR10796553 | Other | lineage4.9 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR18002906 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173185 | Other | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1238558 | Other | lineage4.9 | None | SRR1196478 | Other | lineage4.9 | None | SRR21469202 | Other | La1.7.1 | None | ERR2027230 | Other | lineage4.2.2.2 | None | SRR1792011 | Other | La1.8.1 | None | SRR19303899 | Other | lineage3 | None | SRR1792022 | Other | La1.8.1 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR7069473 | Other | lineage4.1.1.2 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR5818388 | Other | lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR7069931 | Other | lineage4.2.2.2 | None | ERR4816702 | Other | lineage4.6.2.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR3675265 | Other | lineage4 | None | SRR7069391 | Other | lineage4.9 | None | SRR11342669 | Other | lineage4.8 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR4816322 | Other | lineage4.9 | None | ERR2984782 | Pre-XDR-TB | lineage4.3.3 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | ERR10796634 | Other | lineage4.7 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR18002937 | Other | lineage2.2.1 | None | ERR6197025 | Sensitive | lineage4.7 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR18002956 | Other | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR21469200 | Other | La1.7.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR10796592 | Other | lineage4.9 | None | SRR11342684 | HR-TB | lineage4.4.1.1 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR6046484 | Other | lineage1.2.2.2 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR5818432 | MDR-TB | lineage4.9 | None | ERR867555 | Other | lineage3 | None | SRR1175474 | Other | lineage4.9 | None | SRR1792025 | Other | La1.8.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | ERR4178161 | Other | lineage4.4.1.1 | None | ERR3276144 | Other | lineage3 | nl | ERR4814976 | Other | lineage4.9 | None | ERR6197021 | MDR-TB | lineage4.3.4.2;lineage4.7 | None | SRR5818448 | Other | lineage4.9 | None | SRR13180301 | HR-TB | lineage3 | None | SRR1792024 | Other | La1.8.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | ERR10796577 | Other | lineage4.9 | None | SRR7069946 | Other | lineage4.8 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769418 | Other | La1.2 | None | ERR4818831 | Other | lineage3 | None | SRR7236330 | Other | La1.8.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR10796597 | Other | lineage4.3.3 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR10869254 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184329 | Other | lineage4.9 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | SRR7851312 | Other | La1.2 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR10796593 | Other | lineage4.3 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR1792012 | Other | La1.8.1 | None | SRR9971029 | MDR-TB | lineage2.2.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR6197023 | MDR-TB | lineage4.3.4.2;lineage4.7 | None | SRR5818397 | Other | lineage4.9 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR10796632 | Other | lineage4.3.3 | None | SRR7070153 | Sensitive | lineage4.1.2.1 | None | SRR5818414 | Other | lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None |
|---|
