Run ID: SRR22048550
Sample name:
Date: 04-04-2023 03:56:54
Number of reads: 2769827
Percentage reads mapped: 91.83
Strain: lineage1.1.3.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 1.0 |
lineage1.1 | Indo-Oceanic | EAI3;EAI4;EAI5;EAI6 | RD239 | 1.0 |
lineage1.1.3 | Indo-Oceanic | EAI6 | RD239 | 1.0 |
lineage1.1.3.1 | Indo-Oceanic | NA | RD239 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.13 | kanamycin, capreomycin, aminoglycosides, amikacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6112 | p.Met291Ile | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.98 |
rpoC | 763884 | p.Ala172Val | missense_variant | 1.0 |
rpoC | 763886 | c.517C>A | synonymous_variant | 1.0 |
rpoC | 765171 | p.Pro601Leu | missense_variant | 1.0 |
rpoC | 765230 | p.Ala621Thr | missense_variant | 0.99 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473115 | n.1270G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473270 | n.1425G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1473427 | n.-231G>C | upstream_gene_variant | 1.0 |
rrl | 1475869 | n.2212C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475978 | n.2321C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475993 | n.2336C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475997 | n.2340A>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475998 | n.2341C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476253 | n.2596A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476297 | n.2640C>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476300 | n.2643G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.19 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2167983 | p.Gly877Asp | missense_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289627 | c.-386C>T | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 1.0 |
Rv2752c | 3064632 | c.1560C>T | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474597 | c.591C>A | synonymous_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
fbiB | 3642254 | c.720G>A | synonymous_variant | 1.0 |
alr | 3841253 | c.168C>T | synonymous_variant | 1.0 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 1.0 |
embC | 4240485 | p.Ala208Val | missense_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4241042 | p.Asn394Asp | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243848 | p.Val206Met | missense_variant | 1.0 |
embA | 4245969 | p.Pro913Ser | missense_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4326462 | p.Ile338Val | missense_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407780 | c.423G>A | synonymous_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 1.0 |
whiB6 | 4338429 | c.-218_92del | frameshift_variant&start_lost | 1.0 |