EBG00000313339 - n.2596A>G
Drug resistance types
15 Sensitive
29 RR-TB
14 HR-TB
44 MDR-TB
19 Pre-XDR-TB
0 XDR-TB
173 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2.2.2 | 6 |
| 5 | |
| lineage2.2.1 | 61 |
| lineage4.9 | 42 |
| lineage2.2.2;lineage2.2.1 | 1 |
| lineage4.4.1.1 | 8 |
| lineage4.4.2 | 5 |
| lineage2.2.2 | 6 |
| lineage2.2 | 1 |
| lineage4.2.2 | 1 |
| lineage4.5 | 1 |
| lineage4.3.4.2 | 7 |
| lineage4.6.2.2 | 4 |
| lineage4.8 | 15 |
| lineage4.2.1 | 3 |
| lineage4.3.3 | 7 |
| lineage3 | 20 |
| lineage4.1.2.1 | 23 |
| lineage6 | 2 |
| lineage1.1.3.1 | 1 |
| lineage2.2.1.1 | 4 |
| lineage3.1.2 | 1 |
| lineage4.1.1.3 | 4 |
| lineage4 | 14 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage3.1.3 | 3 |
| lineage6.2.3 | 1 |
| lineage4.8.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage3.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.1.2 | 3 |
| lineage1 | 1 |
| La1.2.BCG | 1 |
| lineage4.7 | 3 |
| lineage4.1.1.3.1 | 4 |
| lineage4;lineage3 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage5 | 1 |
| lineage4.1.1 | 2 |
| lineage4.3.1.1 | 2 |
| lineage3.1.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.4 | 1 |
| lineage4.8.2 | 1 |
| lineage4.8;lineage3 | 1 |
| lineage1.1.1.1 | 1 |
| lineage3.1.2.2 | 2 |
| lineage1.2.2.2 | 1 |
| lineage4.6.5 | 1 |
| lineage4.3.4.1 | 4 |
| lineage4.3.2 | 3 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4.3.4 | 2 |
| lineage4.7;lineage4.3.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 294 |
Geographic prevalence
Country level data for this variant is available for 26 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16058249 | Sensitive | lineage4.2.2.2 | None | SRR16156832 | RR-TB | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156751 | RR-TB | lineage4.9 | None | SRR18002876 | MDR-TB | lineage2.2.2;lineage2.2.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR16370436 | MDR-TB | lineage4.4.2 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002906 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002926 | Other | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR18002956 | HR-TB | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002985 | HR-TB | lineage2.2.1 | None | SRR18002987 | Other | lineage2.2.1 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002997 | Other | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003036 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003051 | Other | lineage2.2.1 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR2101471 | RR-TB | lineage4.4.1.1 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19303907 | Other | lineage4.8 | None | SRR19304083 | Other | lineage4.4.1.1 | None | SRR19304104 | Other | lineage4.8 | None | SRR19303784 | Other | lineage4.2.1 | None | SRR19303796 | Other | lineage4.3.3 | None | SRR19303798 | Sensitive | lineage4.4.1.1 | None | SRR19303815 | Other | lineage4.8 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19303899 | Other | lineage3 | None | SRR19303917 | Other | lineage2.2.1 | None | SRR19303949 | Other | lineage4.3.3 | None | SRR19303985 | Other | lineage4.8 | None | SRR19304035 | Other | lineage4.1.2.1 | None | SRR19304094 | Other | lineage6 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR21277569 | Sensitive | lineage4.4.2 | None | SRR22048550 | Other | lineage1.1.3.1 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | ERR4815241 | Other | lineage3.1.2 | gb | ERR4815204 | Other | lineage2.2.1.1 | gb | SRR3675227 | Other | lineage4.9 | None | SRR3675496 | Other | lineage4.1.1.3 | gb | SRR3675208 | HR-TB | lineage4.6.2.2 | None | ERR4814700 | Other | lineage4.3.3 | None | SRR3675265 | Other | lineage4 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR4818401 | HR-TB | lineage2.2.1 | gb | SRR3675533 | Sensitive | lineage3 | None | SRR3675509 | Other | lineage4.9 | None | SRR3675513 | Other | lineage4.8 | None | ERR4815994 | Other | lineage3 | gb | ERR4815079 | RR-TB | lineage3 | None | ERR2027232 | Other | lineage4.3.4.2 | None | ERR2229760 | Other | lineage4.8 | dk | ERR2027291 | Sensitive | lineage3.1.3 | None | ERR4816403 | Other | lineage6.2.3 | None | ERR4816464 | Other | lineage3 | None | SRR3675590 | Sensitive | lineage4.8.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027230 | Other | lineage4.2.2.2 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR2510749 | Sensitive | lineage4.1.2.1 | it | ERR4816493 | Other | lineage4.1.2.1 | None | SRR4033659 | Sensitive | lineage4.4.1.1.1 | za | ERR2513056 | HR-TB | lineage4.1.2.1 | gb | SRR5818386 | Other | None | ERR4818663 | Other | lineage3 | None | ERR2510804 | Other | lineage2.2.1 | None | ERR2510794 | Other | lineage4.3.4.2 | None | ERR4818825 | HR-TB | lineage4.1.2.1 | None | SRR4035773 | Sensitive | lineage4.1.2 | za | ERR4819017 | RR-TB | lineage3 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4818151 | Other | lineage2.2.1 | gb | ERR4818173 | Other | lineage2.2.1 | None | ERR4818176 | Other | lineage4.1.2.1 | None | ERR4818192 | Other | lineage4.1.2.1 | gb | ERR4818509 | RR-TB | La1.2.BCG | gb | ERR4818890 | Other | lineage4.7 | None | ERR4819093 | Other | lineage4.3.3 | None | ERR2509885 | RR-TB | lineage3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4818574 | Other | lineage6 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5818458 | Other | None | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR4819456 | Other | lineage4.8 | None | ERR2513903 | Other | lineage4.4.1.1 | gb | SRR5818445 | Other | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4819770 | Other | lineage4.8 | gb | ERR4820586 | Other | lineage3 | gb | ERR4820742 | Other | lineage4.3.4.2.1 | None | ERR4820026 | Other | lineage3 | None | ERR4820959 | Other | lineage4.1.2.1 | None | ERR4821127 | HR-TB | lineage4.6.2.2 | gb | SRR5818385 | Other | lineage4.9 | None | ERR4821310 | Other | lineage5 | None | ERR4822114 | Other | lineage4.1.2.1 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045537 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045655 | Other | lineage4.1.1.3.1 | None | SRR5818391 | Other | lineage4.9 | None | SRR5818397 | Other | lineage4.9 | None | SRR5818398 | Other | lineage4.9 | None | SRR5818422 | Other | lineage4.9 | None | SRR5818402 | Other | lineage4.9 | None | SRR5818411 | MDR-TB | lineage4.9 | None | SRR5818389 | Other | lineage4.9 | None | SRR5818414 | Other | lineage4.9 | None | SRR5818423 | MDR-TB | lineage4.9 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR5818425 | Other | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | SRR5818441 | Other | lineage4.9 | None | SRR5818460 | Other | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | SRR5818462 | Other | lineage4.9 | None | SRR5818470 | Other | lineage4.9 | None | SRR6045764 | Sensitive | lineage4.9 | None | SRR6045749 | Other | lineage4.1.1 | gb | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818630 | Other | lineage2.2.1 | None | SRR6045805 | Other | lineage4.3.1.1 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6045899 | Other | lineage4.1.2.1 | gb | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6044904 | Other | lineage3 | None | SRR5818690 | Other | lineage4.2.2.2 | None | SRR6045876 | Other | lineage3 | gb | SRR6044769 | Other | lineage1.1.2 | None | SRR6044787 | Other | lineage4.4 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6045999 | Sensitive | lineage4.8.2 | gb | SRR6045295 | Other | lineage4.7 | None | SRR6045396 | Other | lineage4.3.1.1 | None | SRR6046219 | Other | lineage4.8;lineage3 | gb | ERR2851354 | RR-TB | lineage4.9 | None | ERR4828450 | Sensitive | lineage1.1.1.1 | vn | ERR2851355 | MDR-TB | lineage3 | None | ERR4829333 | RR-TB | lineage4 | None | ERR4828843 | MDR-TB | lineage4.2.2.2 | None | SRR6046433 | Other | lineage3 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046655 | Other | lineage4.1.2.1 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6046864 | Other | lineage3 | gb | SRR6046442 | Other | lineage3 | None | SRR6046517 | Other | lineage4.8 | None | SRR6046701 | Other | lineage3.1.2.2 | None | SRR6367397 | Other | lineage4.1.2.1 | None | SRR7131121 | Other | lineage4.3.3 | None | ERR2984792 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR7131032 | Other | lineage2.2.1 | None | SRR7131061 | Other | lineage2.2.1 | None | SRR7131075 | Other | lineage4.8 | None | SRR7131145 | Other | lineage4.1.2.1 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | ERR2984782 | Pre-XDR-TB | lineage4.3.3 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131161 | Other | lineage4.8 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131182 | Other | lineage4.1.2.1 | None | SRR7131196 | Other | lineage4.8 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR7131221 | Other | lineage4.6.2.2 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | SRR7131237 | Other | lineage2.2.1 | None | SRR7131236 | Other | lineage4.3.4.2 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR9971353 | MDR-TB | lineage2.2.2 | None | SRR9971029 | MDR-TB | lineage2.2.2 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR10796558 | Sensitive | lineage4 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796592 | Other | lineage4 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796599 | Other | lineage4 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796615 | Other | lineage4 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796629 | Other | lineage4 | None | ERR10796634 | Other | lineage4 | None | ERR10796627 | Other | lineage4 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR10796635 | Other | lineage4 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283008 | Other | lineage4.9 | None | ERR4457890 | Sensitive | lineage4.1.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR6197021 | MDR-TB | lineage4.7;lineage4.3.4.2 | None | ERR6197036 | Other | lineage4 | None | ERR6197028 | Other | lineage4.9 | None | ERR6197032 | Other | lineage4.9 | None | ERR6197025 | Other | lineage4.7 | None | ERR6197034 | Other | lineage4.9 | None | ERR6197040 | Other | lineage4.9 | None | ERR6197038 | HR-TB | lineage4.9 | None | ERR6197044 | RR-TB | lineage4.9 | None | ERR9117788 | Other | lineage3 | None | ERR7911147 | MDR-TB | lineage4.4.2 | vn | ERR9117781 | Other | lineage3.1.3 | None | SRR11349203 | MDR-TB | lineage4.4.1.1 | None | ERR9117805 | Other | lineage4.3.2 | None | SRR11342648 | MDR-TB | lineage4.1.1.3 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR11349201 | MDR-TB | lineage4.1.1.3 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | SRR10315472 | MDR-TB | lineage2.2.1 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR1173719 | HR-TB | lineage3 | None | SRR13180301 | HR-TB | lineage3 | None | SRR14334195 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR1172213 | Sensitive | lineage4.9 | None | SRR1173310 | MDR-TB | None |
|---|
