Run ID: SRR5818458
Sample name:
Date: 18-08-2022 12:58:22
Number of reads: 422064
Percentage reads mapped: 99.46
Strain:
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.69 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
rrs | 1472119 | n.274G>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472282 | n.437T>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472324 | n.479G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472325 | n.480G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472328 | n.483G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472332 | n.487A>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472333 | n.488G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472338 | n.493A>G | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472412 | n.567A>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472416 | n.571C>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472427 | n.582T>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472436 | n.591G>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472437 | n.592T>G | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.61 |
rrs | 1472448 | n.603T>C | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472449 | n.604C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472450 | n.605A>C | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472451 | n.606C>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472462 | n.617T>G | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472473 | n.628G>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472474 | n.629C>G | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472476 | n.631A>G | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472484 | n.639A>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472496 | n.651T>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472496 | n.651T>G | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472513 | n.668T>C | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472597 | n.752G>A | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472690 | n.845C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472755 | n.910G>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473294 | n.1449A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475945 | n.2288C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475998 | n.2341C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476253 | n.2596A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476297 | n.2640C>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476299 | n.2642C>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476300 | n.2643G>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476308 | n.2651G>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.25 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ahpC | 2726468 | c.276G>A | synonymous_variant | 1.0 |
ahpC | 2726504 | c.312A>G | synonymous_variant | 0.12 |
embB | 4247646 | p.Glu378Ala | missense_variant | 0.97 |
ethA | 4326764 | p.Ala237Val | missense_variant | 0.31 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 0.96 |