lineage | Count |
---|---|
lineage4.3.4.2.1 | 6 |
lineage4.9 | 69 |
lineage4.4.1.1.1 | 1 |
lineage2.2.1 | 35 |
lineage3;lineage4 | 1 |
lineage1.1.1.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4.3.2.1 | 1 |
lineage3 | 6 |
lineage4.1.2.1 | 10 |
lineage4.2.1 | 6 |
lineage4.1;lineage4.9 | 1 |
lineage4.1.3 | 1 |
lineage3.1.1 | 3 |
lineage4.1.2.1;lineage4.9 | 2 |
lineage4.8.1 | 2 |
lineage4.4.2 | 2 |
lineage4.8 | 12 |
La1.6 | 1 |
lineage4.7 | 3 |
lineage4.2.2.2 | 2 |
lineage4.1.1.1 | 3 |
lineage4.3.3 | 6 |
lineage4.4 | 1 |
lineage3.1.2.1;lineage4.9 | 1 |
lineage2.2.2 | 4 |
lineage4.1.1.3.1 | 2 |
lineage2.2.1.1 | 1 |
lineage4.3.4.2 | 3 |
lineage4.1.2 | 1 |
lineage2.2;lineage4 | 1 |
lineage1.2.2 | 1 |
lineage1.1.3.3 | 1 |
lineage1.2.2.2 | 1 |
lineage3.1.1;lineage4.9 | 1 |
lineage4.4.1.1 | 3 |
lineage4.1.2.1;lineage4.4.1.1 | 1 |
lineage4.1.2.1;lineage4.4.1 | 1 |
lineage1.2.1.1 | 1 |
lineage3.1.2.2 | 1 |
lineage4 | 1 |
lineage4.2.1.1 | 1 |
lineage4.3.4.1;lineage4.9 | 1 |
lineage4.3.2 | 1 |
lineage4.3 | 1 |
lineage4.6.1.1 | 1 |
spoligotype | Count |
---|---|
None | 206 |
ID | Drug resistance | Lineage | Country iso2 | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR6045158 | Other | lineage4.9 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR10796598 | Other | lineage4.9 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR1062918 | Other | lineage3 | None | ERR4819491 | Other | lineage4.1.2.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR10796629 | Other | lineage4.1;lineage4.9 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR5818388 | Other | lineage4.9 | None | SRR5818470 | Other | lineage4.9 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR5818389 | Other | lineage4.9 | None | SRR5818396 | Other | lineage4.9 | None | ERR10796627 | Other | lineage4.1.2.1;lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR5818459 | Other | lineage4.9 | None | SRR1140716 | Other | lineage3 | None | SRR1173170 | Other | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | ERR10796560 | Other | lineage4.9 | None | ERR4819007 | Other | lineage2.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR5818442 | Sensitive | lineage4.9 | None | SRR5818395 | Sensitive | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR18002974 | Other | lineage2.2.1 | None | ERR10796634 | Other | lineage4.7 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR6044983 | Other | lineage3.1.1 | None | ERR10796559 | Other | lineage4.9 | None | ERR867569 | Other | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR5818386 | Other | lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | ERR867572 | Other | lineage4.9 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR3675509 | Other | lineage4.9 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693238 | Sensitive | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR5818397 | Other | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | SRR5818427 | HR-TB | lineage4.9 | None | ERR10796553 | Other | lineage4.9 | None | SRR5818398 | Other | lineage4.9 | None | SRR5818409 | Other | lineage4.9 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR5818452 | Other | lineage4.9 | None | ERR10796577 | Other | lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR5818469 | Other | lineage4.9 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR11342646 | HR-TB | lineage3 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR18003045 | Other | lineage2.2.1 | None | ERR10796597 | Other | lineage4.3.3 | None | SRR6045909 | Other | lineage4.8.1 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR10796592 | Other | lineage4.9 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | ERR10796591 | Other | lineage4.9 | None | SRR5818423 | RR-TB | lineage4.9 | None | SRR5818453 | Sensitive | lineage4.9 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR5818404 | Other | lineage4.9 | None | SRR5818414 | Other | lineage4.9 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR5818446 | Other | lineage4.9 | None | SRR5818393 | Other | lineage4.9 | None | SRR7131236 | Other | lineage4.3.4.2 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | SRR11342669 | Other | lineage4.8 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR7131123 | Other | lineage4.8 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR7069835 | Other | lineage2.2.1 | None | ERR10796633 | Other | lineage4.3.4.2 | None | SRR5818385 | Other | lineage4.9 | None | ERR10796581 | Other | lineage4.1.2 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR5818445 | Other | lineage4.9 | None | ERR4818126 | Other | lineage1.2.2 | None | SRR5818458 | Other | lineage4.9 | None | SRR19304104 | Other | lineage4.8 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | ERR4820030 | Other | lineage4.9 | None | SRR6046359 | Other | lineage4.7 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR5818405 | Other | lineage4.9 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | ERR2307789 | MDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR11349203 | MDR-TB | lineage4.4.1.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | DRR185024 | Other | lineage2.2.2 | None | SRR5818425 | Other | lineage4.9 | None | SRR5818444 | Sensitive | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR867571 | Other | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR10796636 | Other | lineage4.1.2.1 | None | SRR5818440 | Other | lineage4.9 | None | SRR7070134 | Other | lineage3.1.1 | None | ERR10796635 | Other | lineage4.8 | None | SRR1173770 | Other | lineage4.9 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR19303907 | Other | lineage4.8 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR5818422 | Other | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR7645928 | Other | lineage4.7 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR1173719 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | SRR6046210 | Other | lineage4.9 | None | ERR10796626 | Other | lineage4.1.2.1 | None | SRR6046117 | Other | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | SRR7131068 | Other | lineage4.8 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR5818456 | Other | lineage4.9 | None | SRR5818460 | Other | lineage4.9 | None | SRR7070521 | Other | lineage4.2.1.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR7070293 | Other | lineage4.8 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | SRR5818413 | Sensitive | lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR5818402 | Other | lineage4.9 | None | SRR5818462 | Other | lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | DRR184629 | Other | lineage2.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR10796593 | Other | lineage4.3 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR5818437 | RR-TB | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None |
---|