Run ID: SRR5818393
Sample name:
Date: 04-04-2023 11:17:04
Number of reads: 595421
Percentage reads mapped: 99.89
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.44 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rrs | 1472119 | n.274G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472282 | n.437T>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472284 | n.439C>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472286 | n.441C>G | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472293 | n.448C>A | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472297 | n.453_465delGTCCGGGTTCTCT | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472315 | n.470T>G | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472328 | n.483G>C | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472332 | n.487A>G | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472333 | n.488G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472338 | n.493A>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472496 | n.651T>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472505 | n.660G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472597 | n.752G>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472674 | n.829T>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472675 | n.830T>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ethA | 4326764 | p.Ala237Val | missense_variant | 0.2 |
ethA | 4327431 | p.Ser15Pro | missense_variant | 0.12 |